MGE detailed information
MGE type: Prophage MGE length: 55242 bp
Accession: NZ_CP020495 Location: 2385704..2440945 Organism: Escherichia coli strain 103 Replicon: chromosome
Accession: NZ_CP020495 Location: 2385704..2440945 Organism: Escherichia coli strain 103 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPA47_RS11805 () | 2380985..2382013 | + | 1029 | WP_001523164.1 | HlyD family secretion protein | - |
| CPA47_RS11810 () | 2382010..2383524 | + | 1515 | WP_020233354.1 | DHA2 family efflux MFS transporter permease subunit | - |
| CPA47_RS11815 () | 2383719..2384282 | + | 564 | WP_001046832.1 | DNA endonuclease SmrA | - |
| CPA47_RS11820 () | 2384303..2385235 | - | 933 | WP_020233353.1 | sensor domain-containing diguanylate cyclase | - |
| CPA47_RS11825 () | 2385300..2385997 | + | 698 | Protein_2279 | IS1 family transposase | - |
| CPA47_RS11830 () | 2386013..2386312 | - | 300 | Protein_2280 | sensor domain-containing diguanylate cyclase | - |
| CPA47_RS26975 () | 2386506..2386553 | + | 48 | WP_211180494.1 | protein YnaN | - |
| CPA47_RS11835 () | 2386567..2387550 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| CPA47_RS11840 () | 2388028..2389401 | + | 1374 | WP_000123748.1 | ATP-dependent RNA helicase DbpA | - |
| CPA47_RS11845 () | 2389530..2390465 | - | 936 | WP_001523172.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| CPA47_RS11850 () | 2390517..2391752 | - | 1236 | WP_000040839.1 | Putative defective protein IntQ ; Integrase | Integrase |
| CPA47_RS11855 () | 2391754..2391969 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| CPA47_RS11860 () | 2392069..2392257 | - | 189 | WP_001302840.1 | DUF1187 family protein | - |
| - () | 2392073..2392251 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2392073..2392251 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2392073..2392251 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2392073..2392251 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| CPA47_RS11865 () | 2392295..2392444 | - | 150 | WP_001443846.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| CPA47_RS11870 () | 2392500..2393309 | - | 810 | WP_000166313.1 | recombination protein RecT | - |
| CPA47_RS11875 () | 2393302..2395902 | - | 2601 | WP_000105140.1 | exodeoxyribonuclease VIII | - |
| CPA47_RS11880 () | 2396004..2396279 | - | 276 | WP_001344816.1 | hypothetical protein | - |
| CPA47_RS11885 () | 2396354..2396524 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| CPA47_RS11890 () | 2396524..2396745 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| CPA47_RS11895 () | 2397187..2397675 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| CPA47_RS11900 () | 2397672..2397827 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| CPA47_RS11915 () | 2398260..2398679 | - | 420 | WP_000233319.1 | helix-turn-helix domain-containing protein | - |
| CPA47_RS11920 () | 2398759..2399013 | + | 255 | WP_001072342.1 | hypothetical protein | - |
| CPA47_RS11925 () | 2399010..2399432 | + | 423 | WP_000693803.1 | hypothetical protein | - |
| CPA47_RS11930 () | 2399510..2400298 | + | 789 | WP_001396581.1 | hypothetical protein | - |
| CPA47_RS11935 () | 2400305..2401051 | + | 747 | WP_020233967.1 | ATP-binding protein | - |
| CPA47_RS11940 () | 2401074..2401835 | + | 762 | WP_000450716.1 | DUF1627 domain-containing protein | - |
| CPA47_RS11945 () | 2401851..2402273 | + | 423 | WP_029702111.1 | DUF977 family protein | - |
| CPA47_RS11950 () | 2402435..2402938 | + | 504 | WP_000137958.1 | hypothetical protein | - |
| CPA47_RS11960 () | 2403059..2403832 | - | 774 | WP_000200358.1 | KilA-N domain-containing protein | - |
| CPA47_RS11965 () | 2404355..2404480 | + | 126 | WP_001445775.1 | type I toxin-antitoxin system Hok family toxin | - |
| CPA47_RS11970 () | 2404563..2404904 | - | 342 | WP_001445776.1 | DUF1971 domain-containing protein | - |
| CPA47_RS11975 () | 2405772..2406371 | + | 600 | WP_000940344.1 | DUF1367 family protein | - |
| CPA47_RS11980 () | 2406371..2406661 | + | 291 | WP_000228032.1 | DUF1364 domain-containing protein | - |
| CPA47_RS11985 () | 2406658..2407200 | + | 543 | WP_000640106.1 | DUF1133 family protein | - |
| CPA47_RS11990 () | 2407422..2407991 | + | 570 | WP_001208722.1 | hypothetical protein | - |
| CPA47_RS11995 () | 2407960..2408262 | - | 303 | WP_001328752.1 | hypothetical protein | - |
| CPA47_RS12000 () | 2408339..2408680 | + | 342 | WP_000781775.1 | phage holin, lambda family | - |
| CPA47_RS12005 () | 2408684..2409160 | + | 477 | WP_023153991.1 | glycoside hydrolase family protein | - |
| CPA47_RS12010 () | 2409377..2409562 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| CPA47_RS12015 () | 2409759..2411216 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| CPA47_RS12020 () | 2411354..2412145 | + | 792 | WP_001291105.1 | ParB/Srx family N-terminal domain-containing protein | - |
| CPA47_RS12025 () | 2412138..2413070 | + | 933 | WP_020233805.1 | hypothetical protein | - |
| CPA47_RS12030 () | 2413006..2413257 | + | 252 | WP_000613571.1 | hypothetical protein | - |
| CPA47_RS12035 () | 2413261..2414355 | + | 1095 | WP_000089448.1 | terminase small subunit | - |
| CPA47_RS12040 () | 2414336..2415637 | + | 1302 | WP_000625348.1 | terminase family protein | - |
| CPA47_RS12045 () | 2415640..2417046 | + | 1407 | WP_000763701.1 | DUF4055 domain-containing protein | - |
| CPA47_RS12050 () | 2417030..2418142 | + | 1113 | WP_001363932.1 | hypothetical protein | - |
| CPA47_RS12055 () | 2418247..2419011 | + | 765 | WP_029702112.1 | hypothetical protein | - |
| CPA47_RS12060 () | 2419110..2420249 | + | 1140 | WP_020233804.1 | hypothetical protein | - |
| CPA47_RS26695 () | 2420292..2420468 | + | 177 | WP_000908084.1 | hypothetical protein | - |
| CPA47_RS12065 () | 2420472..2420867 | + | 396 | WP_000634214.1 | hypothetical protein | - |
| CPA47_RS12070 () | 2420867..2421250 | + | 384 | WP_000524260.1 | hypothetical protein | - |
| CPA47_RS12075 () | 2421251..2421631 | + | 381 | WP_001029815.1 | hypothetical protein | - |
| CPA47_RS12080 () | 2421628..2422020 | + | 393 | WP_000673077.1 | hypothetical protein | - |
| CPA47_RS12085 () | 2422047..2423009 | + | 963 | WP_001328756.1 | hypothetical protein | - |
| CPA47_RS12090 () | 2423160..2423519 | + | 360 | WP_122452218.1 | hypothetical protein | - |
| CPA47_RS12095 () | 2423627..2423827 | + | 201 | WP_032139919.1 | hypothetical protein | - |
| CPA47_RS12100 () | 2423991..2427224 | + | 3234 | WP_023153989.1 | phage tail tape measure protein | - |
| CPA47_RS12105 () | 2427217..2427555 | + | 339 | WP_000024051.1 | phage tail protein | - |
| CPA47_RS12110 () | 2427555..2428253 | + | 699 | WP_001152432.1 | phage minor tail protein L | - |
| CPA47_RS12115 () | 2428259..2429002 | + | 744 | WP_001351716.1 | C40 family peptidase | - |
| CPA47_RS12120 () | 2428939..2429541 | + | 603 | WP_049286672.1 | tail assembly protein | - |
| CPA47_RS12125 () | 2429602..2433081 | + | 3480 | WP_021523093.1 | host specificity protein J | - |
| CPA47_RS12130 () | 2433149..2433748 | + | 600 | WP_001542091.1 | Outer membrane protein X | VF |
| CPA47_RS12135 () | 2433813..2436212 | + | 2400 | WP_032152843.1 | prophage tail fiber N-terminal domain-containing protein | - |
| CPA47_RS12140 () | 2436209..2436490 | + | 282 | WP_000654154.1 | hypothetical protein | - |
| CPA47_RS12145 () | 2436500..2437204 | + | 705 | WP_000235967.1 | tail fiber domain-containing protein | - |
| CPA47_RS12150 () | 2437215..2437508 | + | 294 | WP_000355609.1 | hypothetical protein | - |
| CPA47_RS12155 () | 2437528..2437637 | + | 110 | Protein_2344 | tail fiber assembly protein | - |
| CPA47_RS12160 () | 2437735..2438326 | - | 592 | Protein_2345 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| CPA47_RS12165 () | 2438643..2438876 | - | 234 | WP_106651914.1 | cold shock protein YdfK | - |
| CPA47_RS12170 () | 2438945..2439058 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| CPA47_RS12175 () | 2439662..2440945 | + | 1284 | Protein_2348 | MHS family MFS transporter YdfJ | - |
| CPA47_RS12180 () | 2441034..2442494 | + | 1461 | WP_000527786.1 | mannitol dehydrogenase family protein | - |
| CPA47_RS12185 () | 2442530..2442733 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| CPA47_RS12190 () | 2442911..2443597 | - | 687 | WP_000215553.1 | DNA-binding transcriptional regulator YdfH | - |
| CPA47_RS12195 () | 2443686..2444432 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|