MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 149747 bp
Accession: NZ_CP020442 Location: 1643921..1793667 Organism: Paracoccus yeei strain FDAARGOS_252 Replicon: chromosome
Accession: NZ_CP020442 Location: 1643921..1793667 Organism: Paracoccus yeei strain FDAARGOS_252 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J80_RS10520 () | 1643890..1645671 | - | 1782 | WP_080622832.1 | recombinase family protein | - |
| A6J80_RS10525 () | 1646001..1647296 | + | 1296 | WP_080621405.1 | hypothetical protein | - |
| A6J80_RS10530 () | 1647435..1647866 | - | 432 | WP_080621406.1 | hypothetical protein | - |
| A6J80_RS10540 () | 1647958..1650024 | - | 2067 | WP_080621408.1 | IS21 family transposase ISBcen28 | Transposase |
| A6J80_RS23955 () | 1650118..1651083 | - | 966 | WP_080621410.1 | hypothetical protein | - |
| A6J80_RS10550 () | 1651253..1651888 | - | 636 | WP_146113044.1 | hypothetical protein | - |
| A6J80_RS10555 () | 1651962..1652186 | + | 225 | WP_146113097.1 | ribbon-helix-helix protein, CopG family | - |
| A6J80_RS10560 () | 1652224..1652937 | - | 714 | WP_146113045.1 | thermonuclease family protein | - |
| A6J80_RS10565 () | 1653182..1655248 | - | 2067 | WP_080621416.1 | TRAP transporter permease | - |
| A6J80_RS10570 () | 1655331..1656332 | - | 1002 | WP_105291506.1 | TAXI family TRAP transporter solute-binding subunit | - |
| A6J80_RS10575 () | 1656668..1658152 | + | 1485 | WP_080621419.1 | inorganic phosphate transporter | - |
| A6J80_RS10580 () | 1658925..1660232 | + | 1308 | WP_080621420.1 | short-chain fatty acid transporter | - |
| A6J80_RS10585 () | 1660276..1661688 | + | 1413 | WP_080621422.1 | sodium:alanine symporter family protein | - |
| A6J80_RS10590 () | 1661872..1663644 | - | 1773 | WP_080621423.1 | hypothetical protein ; Integrase | Integrase |
| A6J80_RS10595 () | 1663660..1663842 | - | 183 | WP_105291507.1 | hypothetical protein | - |
| A6J80_RS10600 () | 1664140..1664292 | - | 153 | Protein_1617 | DNA cytosine methyltransferase | - |
| A6J80_RS10605 () | 1664411..1665756 | + | 1346 | Protein_1618 | IS5 family transposase ISPhae1 | Transposase |
| A6J80_RS10615 () | 1666891..1667553 | - | 663 | WP_080621428.1 | DNA cytosine methyltransferase | - |
| A6J80_RS10620 () | 1667559..1668557 | - | 999 | WP_080621429.1 | hypothetical protein | - |
| A6J80_RS23625 () | 1668550..1670136 | - | 1587 | WP_146113046.1 | hypothetical protein | - |
| A6J80_RS10635 () | 1670241..1671173 | + | 933 | WP_080621435.1 | IS5 family transposase ISSpo9 | Transposase |
| A6J80_RS10640 () | 1671396..1672457 | - | 1062 | WP_080621436.1 | hypothetical protein | - |
| A6J80_RS10645 () | 1672694..1673052 | + | 359 | Protein_1625 | hypothetical protein | - |
| A6J80_RS10650 () | 1673082..1673543 | + | 462 | WP_080621438.1 | Gentamicin 3-N-acetyltransferase | ARG |
| A6J80_RS10655 () | 1673779..1674195 | + | 417 | WP_080621440.1 | hypothetical protein | - |
| A6J80_RS10660 () | 1674636..1675313 | + | 678 | WP_080621441.1 | DNA methylase | - |
| A6J80_RS10665 () | 1675385..1675675 | + | 291 | WP_080621442.1 | hypothetical protein | - |
| A6J80_RS23630 () | 1675956..1676720 | - | 765 | WP_146113047.1 | serine protease | - |
| A6J80_RS10670 () | 1677579..1677989 | + | 411 | WP_080621444.1 | single-stranded DNA-binding protein | - |
| A6J80_RS10675 () | 1678311..1678685 | + | 375 | WP_080621445.1 | hypothetical protein | - |
| A6J80_RS10680 () | 1679255..1679458 | + | 204 | WP_080621446.1 | hypothetical protein | - |
| A6J80_RS10685 () | 1679514..1679723 | + | 210 | WP_080621448.1 | hypothetical protein | - |
| A6J80_RS10690 () | 1679760..1679960 | + | 201 | WP_080621449.1 | hypothetical protein | - |
| A6J80_RS10695 () | 1680066..1680278 | + | 213 | WP_080621451.1 | hypothetical protein | - |
| A6J80_RS10700 () | 1680299..1680748 | - | 450 | WP_080622833.1 | DUF2285 domain-containing protein | - |
| A6J80_RS10705 () | 1680843..1681109 | - | 267 | WP_080621453.1 | hypothetical protein | - |
| A6J80_RS10710 () | 1681256..1681519 | - | 264 | WP_080621454.1 | DUF2285 domain-containing protein | - |
| A6J80_RS10715 () | 1681705..1681920 | - | 216 | WP_036749366.1 | helix-turn-helix domain-containing protein | - |
| A6J80_RS10720 () | 1682133..1682402 | + | 270 | WP_080621455.1 | helix-turn-helix domain-containing protein | - |
| A6J80_RS10725 () | 1682411..1683268 | + | 858 | WP_080622834.1 | replication initiator protein A | - |
| A6J80_RS10730 () | 1683524..1684024 | + | 501 | WP_080621457.1 | DUF2840 domain-containing protein | - |
| A6J80_RS10735 () | 1684027..1685382 | + | 1356 | WP_105291508.1 | DNA cytosine methyltransferase | - |
| A6J80_RS10740 () | 1685379..1685945 | + | 567 | WP_080621458.1 | S26 family signal peptidase | - |
| A6J80_RS10745 () | 1685982..1686317 | + | 336 | WP_080621459.1 | DUF736 domain-containing protein | - |
| A6J80_RS10750 () | 1686321..1687139 | + | 819 | WP_080621461.1 | Soluble lytic murein transglycosylase | VF |
| A6J80_RS10755 () | 1687189..1687770 | + | 582 | WP_080621463.1 | hypothetical protein | - |
| A6J80_RS10760 () | 1687887..1688291 | - | 405 | WP_080621465.1 | DUF1801 domain-containing protein | - |
| A6J80_RS10765 () | 1688663..1690402 | + | 1740 | WP_080621467.1 | VirD2 family relaxase/mobilization nuclease | - |
| A6J80_RS10770 () | 1690408..1690737 | - | 330 | WP_080621469.1 | hypothetical protein | - |
| A6J80_RS10775 () | 1690754..1691125 | - | 372 | WP_080621471.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| A6J80_RS10780 () | 1691122..1691316 | - | 195 | WP_080621472.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| A6J80_RS10785 () | 1691522..1693546 | + | 2025 | WP_080621474.1 | Conjugal transfer protein TraG | VF |
| A6J80_RS10790 () | 1693550..1693975 | + | 426 | WP_080621476.1 | CopG family transcriptional regulator | - |
| A6J80_RS10795 () | 1694007..1694261 | - | 255 | WP_080621477.1 | DUF2274 domain-containing protein | - |
| A6J80_RS10800 () | 1694266..1695438 | - | 1173 | WP_080621478.1 | Type IV secretion system protein virB10 | VF |
| A6J80_RS10805 () | 1695438..1696418 | - | 981 | WP_105291509.1 | P-type conjugative transfer protein TrbG | - |
| A6J80_RS10810 () | 1696475..1697164 | - | 690 | WP_080621481.1 | conjugal transfer protein TrbF | - |
| A6J80_RS10815 () | 1697161..1698486 | - | 1326 | WP_080621482.1 | P-type conjugative transfer protein TrbL | - |
| A6J80_RS10820 () | 1698490..1698780 | - | 291 | WP_080621483.1 | putative entry exclusion protein TrbK-alt | - |
| A6J80_RS10825 () | 1698801..1699598 | - | 798 | WP_080621484.1 | P-type conjugative transfer protein TrbJ | - |
| A6J80_RS10830 () | 1699595..1702228 | - | 2634 | WP_080621485.1 | conjugal transfer protein TrbE | - |
| A6J80_RS10835 () | 1702241..1702522 | - | 282 | WP_080621487.1 | VirB3 family type IV secretion system protein | - |
| A6J80_RS10840 () | 1702522..1702674 | - | 153 | Protein_1665 | TrbC/VirB2 family protein | - |
| A6J80_RS10845 () | 1702792..1704138 | + | 1347 | WP_080620799.1 | IS5 family transposase ISPhae1 | Transposase |
| A6J80_RS10850 () | 1704147..1704344 | - | 198 | WP_080621488.1 | TrbC/VirB2 family protein | - |
| A6J80_RS10855 () | 1704341..1705315 | - | 975 | WP_080621490.1 | Type IV secretion system protein VirB11 | VF |
| A6J80_RS10860 () | 1705447..1706793 | + | 1347 | WP_080620799.1 | IS5 family transposase ISPhae1 | Transposase |
| A6J80_RS10870 () | 1707885..1708772 | - | 888 | WP_080622835.1 | HTH-type transcriptional regulator GltC | VF |
| A6J80_RS10875 () | 1709077..1710018 | - | 942 | WP_080621491.1 | LysR family transcriptional regulator | - |
| A6J80_RS10880 () | 1710118..1710920 | + | 803 | WP_105291411.1 | IS5 family transposase | - |
| A6J80_RS10885 () | 1711573..1712034 | - | 462 | WP_080622836.1 | VOC family protein | - |
| A6J80_RS10890 () | 1712048..1712392 | - | 345 | WP_080621492.1 | hypothetical protein | - |
| A6J80_RS10895 () | 1712450..1712767 | - | 318 | WP_146113048.1 | hypothetical protein | - |
| A6J80_RS10900 () | 1712797..1713876 | - | 1080 | WP_080621494.1 | aromatic ring-hydroxylating dioxygenase subunit alpha | - |
| A6J80_RS10905 () | 1714420..1715550 | + | 1131 | WP_080621496.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| A6J80_RS10910 () | 1715839..1716441 | + | 603 | WP_080621497.1 | hypothetical protein | - |
| A6J80_RS10915 () | 1716769..1717395 | - | 627 | WP_080621498.1 | glutathione S-transferase family protein | - |
| A6J80_RS10920 () | 1717397..1718251 | - | 855 | WP_080621499.1 | aromatic ring-hydroxylating dioxygenase subunit alpha | - |
| A6J80_RS10925 () | 1718309..1718980 | - | 672 | WP_101753501.1 | Rieske (2Fe-2S) protein | - |
| A6J80_RS10930 () | 1719091..1719324 | - | 234 | WP_080621503.1 | hypothetical protein | - |
| A6J80_RS10935 () | 1719326..1720273 | - | 948 | WP_080621504.1 | PDR/VanB family oxidoreductase | - |
| A6J80_RS10940 () | 1720270..1720911 | - | 642 | WP_080621505.1 | glutathione S-transferase | - |
| A6J80_RS10945 () | 1720908..1721441 | - | 534 | WP_157935971.1 | Rieske 2Fe-2S domain-containing protein | - |
| A6J80_RS10950 () | 1721438..1722268 | - | 831 | WP_080621509.1 | hypothetical protein | - |
| A6J80_RS10955 () | 1722265..1723320 | - | 1056 | WP_167553441.1 | aromatic ring-hydroxylating dioxygenase subunit alpha | - |
| A6J80_RS10960 () | 1723867..1724010 | - | 144 | WP_167553442.1 | LysR family transcriptional regulator | - |
| A6J80_RS10965 () | 1724283..1725821 | + | 1539 | WP_080622838.1 | Autoinducer 2 import ATP-binding protein LsrA | VF |
| A6J80_RS10970 () | 1725821..1726906 | + | 1086 | WP_105291510.1 | ABC transporter permease | - |
| A6J80_RS10975 () | 1726903..1727826 | + | 924 | WP_080621512.1 | ABC transporter permease | - |
| A6J80_RS10980 () | 1727852..1728934 | + | 1083 | WP_080621514.1 | BMP family ABC transporter substrate-binding protein | - |
| A6J80_RS10985 () | 1729073..1729534 | + | 462 | WP_080621516.1 | hypothetical protein | - |
| A6J80_RS10990 () | 1729607..1729831 | + | 225 | WP_080621518.1 | hypothetical protein | - |
| A6J80_RS11000 () | 1730224..1730591 | - | 368 | Protein_1696 | transposase | - |
| A6J80_RS11005 () | 1730787..1732520 | - | 1734 | WP_080622840.1 | hypothetical protein ; Integrase | Integrase |
| A6J80_RS23960 () | 1732520..1732711 | - | 192 | WP_167553443.1 | hypothetical protein | - |
| A6J80_RS11010 () | 1732808..1734103 | + | 1296 | WP_080621519.1 | hypothetical protein | - |
| A6J80_RS11015 () | 1734157..1734495 | - | 339 | WP_146113049.1 | hypothetical protein | - |
| A6J80_RS11020 () | 1734586..1736697 | - | 2112 | WP_105291511.1 | AAA family ATPase | - |
| A6J80_RS23965 () | 1736778..1737707 | - | 930 | WP_080621523.1 | hypothetical protein | - |
| A6J80_RS11030 () | 1737922..1738509 | - | 588 | WP_146113050.1 | hypothetical protein | - |
| A6J80_RS23970 () | 1738639..1738806 | + | 168 | WP_167553444.1 | hypothetical protein | - |
| A6J80_RS11035 () | 1738886..1739533 | - | 648 | WP_080621527.1 | SOS response-associated peptidase family protein | - |
| A6J80_RS11040 () | 1739686..1740441 | + | 756 | WP_080621528.1 | damage-inducible protein | - |
| A6J80_RS11045 () | 1740362..1741831 | + | 1470 | WP_080621530.1 | DNA polymerase Y family protein | - |
| A6J80_RS11050 () | 1741828..1745028 | + | 3201 | WP_080621532.1 | error-prone DNA polymerase | - |
| A6J80_RS11055 () | 1745462..1746265 | + | 804 | WP_080621534.1 | hypothetical protein | - |
| A6J80_RS11060 () | 1746436..1746852 | + | 417 | WP_105291512.1 | IS66 family transposase ISRhsp5 | Transposase |
| A6J80_RS11065 () | 1746852..1747205 | + | 354 | WP_080621536.1 | IS66 family transposase ISRhsp5 | Transposase |
| A6J80_RS11070 () | 1747274..1748839 | + | 1566 | WP_080621538.1 | IS66 family transposase ISRhsp5 | Transposase |
| A6J80_RS11075 () | 1748856..1749962 | + | 1107 | Protein_1713 | IS66 family transposase ISRel8 | Transposase |
| A6J80_RS11080 () | 1750335..1752041 | - | 1707 | WP_080621539.1 | DUF262 domain-containing protein | - |
| A6J80_RS23635 () | 1752044..1753099 | - | 1056 | WP_146113051.1 | hypothetical protein | - |
| A6J80_RS11085 () | 1753096..1754349 | - | 1254 | WP_080621541.1 | AAA family ATPase | - |
| A6J80_RS11090 () | 1754828..1755700 | + | 873 | WP_080621543.1 | helix-turn-helix transcriptional regulator | - |
| A6J80_RS11095 () | 1755734..1757239 | - | 1506 | WP_080621544.1 | hypothetical protein | - |
| A6J80_RS11100 () | 1757905..1759389 | + | 1485 | WP_080621546.1 | multicopper oxidase domain-containing protein | - |
| A6J80_RS11105 () | 1759403..1760017 | + | 615 | WP_036702664.1 | DsbA family protein | - |
| A6J80_RS11110 () | 1760111..1760563 | + | 453 | WP_172645191.1 | DUF305 domain-containing protein | - |
| A6J80_RS11115 () | 1760618..1761268 | + | 651 | WP_036702644.1 | L,D-transpeptidase | - |
| A6J80_RS11120 () | 1761297..1761569 | - | 273 | WP_036721734.1 | hypothetical protein | - |
| A6J80_RS11125 () | 1761609..1762064 | - | 456 | WP_080621548.1 | cytochrome c | - |
| A6J80_RS11130 () | 1762068..1762547 | - | 480 | WP_080621549.1 | CopG family transcriptional regulator | - |
| A6J80_RS23640 () | 1762642..1762965 | - | 324 | WP_136650133.1 | hypothetical protein | - |
| A6J80_RS11135 () | 1762965..1763246 | - | 282 | WP_036702648.1 | metal-sensitive transcriptional regulator | - |
| A6J80_RS11140 () | 1763434..1765710 | + | 2277 | WP_080622842.1 | Copper-transporting P-type ATPase | VF |
| A6J80_RS11145 () | 1765952..1766080 | + | 129 | Protein_1729 | arsenical resistance protein ArsH | - |
| A6J80_RS11150 () | 1766209..1767048 | + | 840 | WP_036702652.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| A6J80_RS11155 () | 1767053..1768060 | + | 1008 | WP_036702653.1 | ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase | - |
| A6J80_RS11160 () | 1768003..1769316 | + | 1314 | WP_080621551.1 | organoarsenical effux MFS transporter ArsJ | - |
| A6J80_RS11165 () | 1769662..1771944 | - | 2283 | WP_080621552.1 | cadmium-translocating P-type ATPase | - |
| A6J80_RS11170 () | 1772033..1772470 | + | 438 | WP_080621553.1 | helix-turn-helix domain-containing protein | - |
| A6J80_RS11175 () | 1772874..1773506 | + | 633 | WP_080621554.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| A6J80_RS11180 () | 1773913..1774875 | + | 963 | WP_146113052.1 | winged helix-turn-helix domain-containing protein | - |
| A6J80_RS23645 () | 1774886..1775827 | + | 942 | WP_146113053.1 | hypothetical protein | - |
| A6J80_RS11185 () | 1775756..1777102 | - | 1347 | WP_080620799.1 | IS5 family transposase ISPhae1 | Transposase |
| A6J80_RS23650 () | 1777255..1777809 | + | 555 | WP_146113054.1 | hypothetical protein | - |
| A6J80_RS11195 () | 1778368..1779240 | + | 873 | WP_080621556.1 | helix-turn-helix transcriptional regulator | - |
| A6J80_RS11200 () | 1779274..1781148 | - | 1875 | WP_105291514.1 | hypothetical protein | - |
| A6J80_RS11205 () | 1781142..1781516 | - | 375 | WP_080621557.1 | plasmid mobilization relaxosome protein MobC | - |
| A6J80_RS11210 () | 1781808..1782089 | - | 282 | WP_114350133.1 | hypothetical protein | - |
| A6J80_RS23655 () | 1782148..1783761 | - | 1614 | WP_146113055.1 | transporter | - |
| A6J80_RS11225 () | 1783760..1784761 | + | 1002 | WP_167553445.1 | WYL domain-containing protein | - |
| A6J80_RS11230 () | 1784771..1784968 | + | 198 | WP_080621560.1 | hypothetical protein | - |
| A6J80_RS11235 () | 1784974..1788120 | - | 3147 | WP_080621561.1 | UvrD-helicase domain-containing protein | - |
| A6J80_RS11240 () | 1788117..1790111 | - | 1995 | WP_080621562.1 | PD-(D/E)XK nuclease family protein | - |
| A6J80_RS11245 () | 1790431..1790886 | - | 456 | WP_080621563.1 | DIP1984 family protein | - |
| A6J80_RS11250 () | 1791067..1791615 | + | 549 | WP_105291515.1 | metallophosphoesterase | - |
| A6J80_RS11255 () | 1791797..1792705 | + | 909 | Protein_1751 | IS5 family transposase ISPmar3 | Transposase |
| A6J80_RS11260 () | 1792762..1793169 | - | 408 | Protein_1752 | IS5 family transposase | - |
| A6J80_RS11265 () | 1793145..1793426 | - | 282 | Protein_1753 | transposase | - |
| A6J80_RS11270 () | 1793829..1794080 | + | 252 | Protein_1754 | transposase | - |
| A6J80_RS11275 () | 1794613..1794900 | - | 288 | WP_080621564.1 | DUF1330 domain-containing protein | - |
| A6J80_RS11280 () | 1794949..1796940 | - | 1992 | WP_080621565.1 | PhoX family phosphatase | - |
| A6J80_RS11285 () | 1797080..1797679 | - | 600 | WP_080621566.1 | TetR/AcrR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|