MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 50369 bp
Accession: NZ_CP020374 Location: 1..50369 Organism: Shewanella khirikhana strain TH2012 Replicon: plasmid pSTH1
Accession: NZ_CP020374 Location: 1..50369 Organism: Shewanella khirikhana strain TH2012 Replicon: plasmid pSTH1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| STH12_RS21075 () | 1022..2152 | + | 1131 | WP_126169612.1 | hypothetical protein | - |
| STH12_RS21080 () | 2163..2759 | + | 597 | WP_126169613.1 | hypothetical protein | - |
| STH12_RS21085 () | 2847..4382 | + | 1536 | WP_164551323.1 | Flp pilus assembly complex ATPase component TadA | - |
| STH12_RS21090 () | 4394..5425 | + | 1032 | WP_126169615.1 | hypothetical protein | - |
| STH12_RS21095 () | 5658..6023 | + | 366 | WP_126169667.1 | type II secretion system protein | - |
| STH12_RS21100 () | 6032..6544 | + | 513 | WP_126169616.1 | hypothetical protein | - |
| STH12_RS21105 () | 6541..7506 | + | 966 | WP_126169617.1 | hypothetical protein | - |
| STH12_RS21110 () | 7518..8195 | + | 678 | WP_126169618.1 | hypothetical protein | - |
| STH12_RS21115 () | 8268..8522 | + | 255 | WP_126169619.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| STH12_RS21120 () | 8522..8851 | + | 330 | WP_126169620.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| STH12_RS21125 () | 8953..9948 | + | 996 | WP_126169621.1 | trypsin-like serine protease | - |
| STH12_RS21130 () | 10011..10679 | + | 669 | WP_126169622.1 | hypothetical protein | - |
| STH12_RS21135 () | 10866..11231 | - | 366 | WP_126169668.1 | hypothetical protein | - |
| STH12_RS21140 () | 11360..11851 | + | 492 | WP_126169669.1 | conjugative transfer signal peptidase TraF | - |
| STH12_RS21145 () | 11876..12127 | + | 252 | WP_126169623.1 | hypothetical protein | - |
| STH12_RS21150 () | 12099..13007 | + | 909 | WP_126169624.1 | hypothetical protein | - |
| STH12_RS21155 () | 13052..13435 | - | 384 | WP_126169625.1 | DNA-binding protein | - |
| STH12_RS21160 () | 13446..13745 | - | 300 | WP_126169626.1 | type II toxin-antitoxin system HigB family toxin | - |
| STH12_RS21165 () | 13838..15721 | + | 1884 | WP_126169627.1 | type IV secretory system conjugative DNA transfer family protein | - |
| STH12_RS21170 () | 15818..16132 | + | 315 | WP_126169628.1 | single-stranded DNA-binding protein | - |
| STH12_RS21175 () | 16145..18199 | + | 2055 | WP_126169629.1 | DNA topoisomerase 3 | - |
| STH12_RS21180 () | 18276..18461 | + | 186 | WP_126169630.1 | conjugal transfer protein TraD | - |
| STH12_RS21185 () | 18454..19353 | + | 900 | Protein_23 | DUF1738 domain-containing protein | - |
| STH12_RS21190 () | 21813..22283 | + | 471 | WP_126169631.1 | hypothetical protein | - |
| STH12_RS21195 () | 22541..24694 | - | 2154 | WP_126169632.1 | Protein TraI | Relaxase |
| STH12_RS21200 () | 24691..25080 | - | 390 | WP_126169633.1 | conjugal transfer transcriptional regulator TraJ | - |
| STH12_RS21205 () | 25437..25757 | + | 321 | WP_126169634.1 | TraK family protein | - |
| STH12_RS21210 () | 25767..26492 | + | 726 | WP_126169635.1 | conjugal transfer protein TraL | - |
| STH12_RS21215 () | 26489..26926 | + | 438 | WP_126169636.1 | conjugal transfer protein TraM | - |
| STH12_RS21220 () | 26950..27219 | - | 270 | WP_126169637.1 | hypothetical protein | VF |
| STH12_RS21230 () | 27534..27926 | - | 393 | WP_126169639.1 | H-NS histone family protein | - |
| STH12_RS21235 () | 27954..28574 | - | 621 | WP_126169640.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| STH12_RS21240 () | 28725..28931 | - | 207 | WP_126169641.1 | hypothetical protein | - |
| STH12_RS21245 () | 28937..30175 | - | 1239 | WP_126169642.1 | phosphoribosyltransferase | - |
| STH12_RS21250 () | 30207..30569 | - | 363 | WP_126169643.1 | hypothetical protein | - |
| STH12_RS21255 () | 30562..31254 | - | 693 | WP_126169644.1 | ParA family protein | - |
| STH12_RS21260 () | 31526..31756 | + | 231 | WP_126169645.1 | DUF2188 domain-containing protein | - |
| STH12_RS21265 () | 32191..32469 | - | 279 | WP_126169646.1 | hypothetical protein | - |
| STH12_RS21270 () | 32485..32670 | - | 186 | WP_126169647.1 | hypothetical protein | - |
| STH12_RS21275 () | 32751..33071 | - | 321 | WP_126169648.1 | hypothetical protein | - |
| STH12_RS21280 () | 33082..33291 | - | 210 | WP_126169649.1 | hypothetical protein | - |
| STH12_RS21285 () | 33304..33546 | - | 243 | WP_126169650.1 | hypothetical protein | - |
| STH12_RS21290 () | 33555..33785 | - | 231 | WP_126169651.1 | hypothetical protein | - |
| STH12_RS21295 () | 33860..34090 | - | 231 | WP_126169670.1 | hypothetical protein | - |
| STH12_RS21300 () | 34090..34785 | - | 696 | WP_126169652.1 | site-specific integrase | - |
| STH12_RS21305 () | 35454..36200 | - | 747 | WP_126169653.1 | hypothetical protein | - |
| STH12_RS21310 () | 36936..37457 | - | 522 | WP_126169654.1 | hypothetical protein | - |
| STH12_RS21315 () | 38084..38707 | + | 624 | WP_126169655.1 | PAS domain-containing protein | - |
| STH12_RS21320 () | 38846..39031 | + | 186 | WP_126169656.1 | TraY domain-containing protein | - |
| STH12_RS21325 () | 39630..40556 | + | 927 | WP_126169657.1 | Type IV secretion system protein PtlH | VF |
| STH12_RS21330 () | 40565..40888 | + | 324 | WP_126169658.1 | TrbC/VirB2 family protein | - |
| STH12_RS21335 () | 40901..41194 | + | 294 | WP_126169659.1 | VirB3 family type IV secretion system protein | - |
| STH12_RS21340 () | 41197..43632 | + | 2436 | WP_126169660.1 | conjugal transfer protein TrbE | - |
| STH12_RS21345 () | 43633..44406 | + | 774 | WP_126169661.1 | P-type conjugative transfer protein TrbJ | - |
| STH12_RS21350 () | 44417..45775 | + | 1359 | WP_126169662.1 | P-type conjugative transfer protein TrbL | - |
| STH12_RS21355 () | 45783..46475 | + | 693 | WP_126169663.1 | conjugal transfer protein TrbF | - |
| STH12_RS21360 () | 46475..47329 | + | 855 | WP_126169664.1 | P-type conjugative transfer protein TrbG | - |
| STH12_RS21365 () | 47334..47774 | + | 441 | WP_126169665.1 | hypothetical protein | - |
| STH12_RS21370 () | 47767..49068 | + | 1302 | WP_126169666.1 | conjugal transfer protein TrbI | - |
| STH12_RS21375 () | 49145..49888 | + | 744 | WP_126169671.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|