MGE detailed information
MGE type: Genomic_island MGE length: 53289 bp
Accession: NZ_CP020342 Location: 3882685..3935973 Organism: Shigella flexneri 1a strain 0439 Replicon: chromosome
Accession: NZ_CP020342 Location: 3882685..3935973 Organism: Shigella flexneri 1a strain 0439 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS647_RS20980 (3877760) | 3877760..3878071 | - | 312 | WP_000489563.1 | protein YmdA | - |
| BS647_RS20985 (3878192) | 3878192..3878383 | - | 192 | Protein_3806 | curli assembly protein CsgC | - |
| BS647_RS20990 (3878455) | 3878455..3879623 | + | 1169 | WP_000747032.1 | IS3-like element IS911 family transposase | - |
| BS647_RS27970 (3879620) | 3879620..3879776 | - | 157 | Protein_3808 | curli assembly protein CsgC | - |
| BS647_RS21000 (3879835) | 3879835..3880200 | - | 366 | WP_001144017.1 | curli major subunit CsgA | - |
| BS647_RS21005 (3880227) | 3880227..3881262 | - | 1036 | Protein_3810 | IS3 family transposase | - |
| BS647_RS21010 (3881328) | 3881328..3881435 | - | 108 | Protein_3811 | curlin | - |
| BS647_RS21015 (3881476) | 3881476..3881931 | - | 456 | WP_005047380.1 | curli minor subunit CsgB | - |
| BS647_RS21030 (3882685) | 3882685..3883335 | + | 651 | WP_000481500.1 | CsgBAC operon transcriptional regulatory protein | VF |
| BS647_RS21035 (3883340) | 3883340..3883729 | + | 390 | WP_000833291.1 | Curli production assembly/transport component CsgE | VF |
| BS647_RS21040 (3883754) | 3883754..3884170 | + | 417 | WP_001264088.1 | Curli production assembly/transport component CsgF | VF |
| BS647_RS21045 (3884197) | 3884197..3884972 | + | 776 | Protein_3816 | curli production assembly/transport protein CsgG | - |
| BS647_RS21050 (3885036) | 3885036..3885527 | - | 492 | WP_001297187.1 | DUF1097 domain-containing protein | - |
| BS647_RS21055 (3885629) | 3885629..3886183 | - | 555 | WP_001001915.1 | molecular chaperone YcdY | - |
| BS647_RS21060 (3886207) | 3886207..3886944 | - | 738 | WP_000283673.1 | zinc-binding phosphatase | - |
| BS647_RS21065 (3886999) | 3886999..3887937 | - | 939 | Protein_3820 | glyoxylate/hydroxypyruvate reductase GhrA | - |
| BS647_RS21075 (3888409) | 3888409..3888690 | - | 282 | Protein_3821 | DUF4942 domain-containing protein | - |
| BS647_RS21080 (3888972) | 3888972..3889976 | - | 1005 | WP_001179707.1 | IS110 family transposase ISSfl8 | Transposase |
| BS647_RS21085 (3890048) | 3890048..3890608 | - | 561 | Protein_3823 | DUF4942 domain-containing protein | - |
| BS647_RS21090 (3890693) | 3890693..3890890 | - | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| BS647_RS21095 (3890902) | 3890902..3891393 | - | 492 | WP_000976828.1 | DUF5983 family protein | - |
| BS647_RS21100 (3891390) | 3891390..3891764 | - | 375 | WP_000854917.1 | TA system toxin CbtA family protein | Toxin Detail |
| BS647_RS21105 (3891811) | 3891811..3892185 | - | 375 | WP_001280958.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| BS647_RS21115 (3892348) | 3892348..3892569 | - | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| BS647_RS21120 (3892632) | 3892632..3893108 | - | 477 | WP_005011624.1 | RadC family protein | - |
| BS647_RS27455 (3893124) | 3893124..3893597 | - | 474 | WP_005011597.1 | antirestriction protein | - |
| BS647_RS21130 (3893939) | 3893939..3894760 | - | 822 | WP_001234584.1 | DUF932 domain-containing protein | - |
| BS647_RS27465 (3894860) | 3894860..3895033 | - | 174 | WP_000088744.1 | DUF905 family protein | - |
| BS647_RS28555 (3895153) | 3895153..3895416 | - | 264 | WP_000466628.1 | DNA polymerase III subunit gamma/tau | - |
| BS647_RS21145 (3896355) | 3896355..3896771 | - | 417 | WP_000275180.1 | Transposon Tn10 TetD protein | VF |
| BS647_RS21150 (3896859) | 3896859..3897452 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| BS647_RS21155 (3897565) | 3897565..3898770 | - | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| BS647_RS21160 (3898852) | 3898852..3899475 | + | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| BS647_RS21165 (3899453) | 3899453..3899842 | - | 390 | Protein_3839 | transcriptional regulator | - |
| BS647_RS21180 (3900626) | 3900626..3901456 | - | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| BS647_RS21185 (3901666) | 3901666..3902679 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| BS647_RS27475 (3902882) | 3902882..3903232 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| BS647_RS21195 (3903358) | 3903358..3903918 | + | 561 | WP_000147567.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| BS647_RS21200 (3903921) | 3903921..3906887 | + | 2967 | WP_001138064.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| BS647_RS21205 (3906954) | 3906954..3907331 | + | 378 | WP_000656305.1 | GNAT family N-acetyltransferase | - |
| BS647_RS21210 (3907532) | 3907532..3908191 | - | 660 | WP_000412211.1 | Chloramphenicol acetyltransferase | ARG |
| BS647_RS21225 (3908470) | 3908470..3909167 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| BS647_RS21230 (3909184) | 3909184..3909306 | + | 123 | Protein_3849 | transcriptional regulator | - |
| BS647_RS21235 (3909284) | 3909284..3909907 | - | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| BS647_RS21240 (3909989) | 3909989..3911194 | + | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| BS647_RS21245 (3911307) | 3911307..3911900 | - | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| BS647_RS21250 (3911988) | 3911988..3912404 | + | 417 | WP_000275180.1 | Transposon Tn10 TetD protein | VF |
| BS647_RS21255 (3912463) | 3912463..3913160 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| BS647_RS21260 (3913177) | 3913177..3913665 | + | 489 | Protein_3855 | putative hexosyltransferase CapU | - |
| BS647_RS21265 (3913670) | 3913670..3914620 | + | 951 | WP_005086346.1 | virulence factor VirK | - |
| BS647_RS21270 (3914685) | 3914685..3915629 | + | 945 | WP_001411475.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| BS647_RS21275 (3915810) | 3915810..3916949 | + | 1140 | WP_000088357.1 | IS3 family transposase ISSd1 | Transposase |
| BS647_RS21280 (3917103) | 3917103..3919100 | + | 1998 | WP_001293435.1 | choline BCCT transporter BetT | - |
| BS647_RS21290 (3919163) | 3919163..3920440 | + | 1278 | WP_000625669.1 | DUF2254 domain-containing protein | - |
| BS647_RS21300 (3921949) | 3921949..3922167 | + | 219 | WP_000145481.1 | TetR/AcrR family transcriptional regulator | - |
| BS647_RS21305 (3922218) | 3922218..3922583 | - | 366 | Protein_3863 | IS21 family transposase IS100kyp | Transposase |
| BS647_RS21310 (3922686) | 3922686..3923425 | + | 740 | Protein_3864 | IS3 family transposase IS629 | Transposase |
| BS647_RS21325 (3924098) | 3924098..3925606 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| BS647_RS21330 (3925690) | 3925690..3926169 | + | 480 | Protein_3866 | IS3 family transposase IS629 | Transposase |
| BS647_RS21335 (3926209) | 3926209..3926550 | - | 342 | WP_094081551.1 | inovirus-type Gp2 protein | - |
| BS647_RS21340 (3926578) | 3926578..3927140 | - | 563 | Protein_3868 | inovirus Gp2 family protein | - |
| BS647_RS28560 (3927204) | 3927204..3927550 | - | 347 | Protein_3869 | DEAD/DEAH box helicase | - |
| BS647_RS21350 (3927657) | 3927657..3928220 | - | 564 | WP_000282110.1 | inovirus-type Gp2 protein | - |
| BS647_RS28565 (3929595) | 3929595..3931112 | - | 1518 | WP_014532214.1 | hypothetical protein | - |
| BS647_RS21365 (3931234) | 3931234..3932390 | + | 1157 | WP_094081518.1 | IS3 family transposase IS600 | Transposase |
| BS647_RS21370 (3932431) | 3932431..3932697 | - | 267 | WP_025760631.1 | hypothetical protein | - |
| BS647_RS21375 (3932798) | 3932798..3933085 | + | 288 | WP_000070931.1 | AlpA family transcriptional regulator | - |
| BS647_RS21380 (3933057) | 3933057..3934586 | + | 1530 | WP_005067490.1 | DUF3987 domain-containing protein | - |
| BS647_RS21385 (3934756) | 3934756..3935973 | - | 1218 | WP_000279879.1 | Prophage integrase IntA ; Integrase | Integrase |
| BS647_RS21390 (3936340) | 3936340..3937326 | - | 987 | WP_000611853.1 | protein YcdU | - |
| BS647_RS21395 (3937323) | 3937323..3937851 | - | 529 | Protein_3878 | ACP S-malonyltransferase | - |
| BS647_RS21400 (3937918) | 3937918..3939080 | + | 1163 | WP_094081552.1 | IS3-like element IS3 family transposase | - |
| BS647_RS21405 (3939190) | 3939190..3939978 | - | 789 | WP_005047400.1 | phosphate starvation-inducible protein PhoH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|