MGE detailed information
MGE type: Prophage MGE length: 64466 bp
Accession: NZ_CP020342 Location: 3516279..3580744 Organism: Shigella flexneri 1a strain 0439 Replicon: chromosome
Accession: NZ_CP020342 Location: 3516279..3580744 Organism: Shigella flexneri 1a strain 0439 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS647_RS18880 () | 3511357..3512157 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| BS647_RS18885 () | 3512170..3513021 | + | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| BS647_RS18890 () | 3513076..3513552 | + | 477 | WP_000156246.1 | DUF986 family protein | - |
| BS647_RS18895 () | 3513581..3514278 | + | 698 | WP_227804321.1 | IS1 family transposase | - |
| BS647_RS18905 () | 3514741..3515307 | + | 567 | WP_001668667.1 | manganese efflux pump MntP | - |
| BS647_RS18910 () | 3515304..3516113 | - | 810 | WP_000010128.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| BS647_RS18915 () | 3516279..3516488 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| BS647_RS18920 () | 3516501..3516644 | - | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| BS647_RS18930 () | 3517315..3517602 | - | 288 | WP_001006860.1 | YebO family protein | - |
| BS647_RS18935 () | 3517677..3517820 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| BS647_RS18940 () | 3517979..3518218 | + | 240 | WP_001211010.1 | YobH family protein | - |
| BS647_RS18945 () | 3518361..3519152 | - | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| BS647_RS18950 () | 3519329..3520702 | + | 1374 | WP_001127218.1 | MFS transporter | - |
| BS647_RS18955 () | 3520748..3521629 | - | 882 | WP_000984517.1 | protease HtpX | - |
| BS647_RS18960 () | 3521821..3523869 | - | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| BS647_RS18965 () | 3523889..3524587 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| BS647_RS18970 () | 3524684..3525181 | - | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| BS647_RS18975 () | 3525311..3526594 | + | 1284 | WP_001207280.1 | membrane integrity lipid transport subunit YebS | - |
| BS647_RS18980 () | 3526563..3529183 | + | 2621 | Protein_3431 | hypothetical protein | VF |
| BS647_RS18985 () | 3529263..3530702 | + | 1440 | Protein_3432 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BS647_RS18995 () | 3530820..3531056 | + | 237 | WP_001295499.1 | YebV family protein | - |
| BS647_RS19000 () | 3531161..3531352 | + | 192 | WP_005049838.1 | YebW family protein | - |
| BS647_RS19005 () | 3531377..3531565 | - | 189 | Protein_3435 | serine/threonine-protein phosphatase | - |
| BS647_RS19015 () | 3532830..3533276 | - | 447 | Protein_3437 | metallophosphoesterase | - |
| BS647_RS19025 () | 3534795..3536510 | + | 1716 | WP_128568580.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| BS647_RS28510 () | 3536580..3536684 | - | 105 | Protein_3440 | tail fiber assembly protein | - |
| BS647_RS19035 () | 3536690..3537313 | - | 624 | WP_000930142.1 | DUF4376 domain-containing protein | - |
| BS647_RS27910 () | 3537264..3537431 | - | 168 | Protein_3442 | IS66 family transposase ISSfl3 | Transposase |
| BS647_RS27915 () | 3537433..3537813 | - | 381 | Protein_3443 | IS66 family transposase ISSfl3 | Transposase |
| BS647_RS19060 () | 3539037..3539925 | + | 889 | Protein_3444 | Rha family transcriptional regulator | - |
| BS647_RS19065 () | 3539922..3541195 | + | 1274 | WP_094081546.1 | IS3 family transposase IS2 | Transposase |
| BS647_RS19070 () | 3541272..3541493 | + | 222 | WP_000560210.1 | cell division protein FtsZ | - |
| BS647_RS19075 () | 3541493..3541663 | + | 171 | WP_001359121.1 | YdaE family protein | - |
| BS647_RS19080 () | 3541738..3542013 | + | 276 | WP_005049830.1 | hypothetical protein | - |
| BS647_RS19085 () | 3542113..3543528 | + | 1416 | Protein_3449 | exodeoxyribonuclease VIII | - |
| BS647_RS19090 () | 3543585..3544741 | - | 1157 | Protein_3450 | IS3 family transposase IS600 | Transposase |
| BS647_RS19095 () | 3544840..3545100 | + | 261 | WP_005135630.1 | host-nuclease inhibitor Gam family protein | - |
| BS647_RS19100 () | 3545106..3546203 | + | 1098 | WP_001173294.1 | AAA family ATPase | - |
| BS647_RS19105 () | 3546278..3547487 | + | 1210 | Protein_3453 | IS3 family transposase IS629 | Transposase |
| BS647_RS19110 () | 3547535..3547702 | + | 168 | WP_005049823.1 | excisionase family protein | - |
| BS647_RS19115 () | 3547704..3547874 | + | 171 | Protein_3455 | DUF3596 domain-containing protein | - |
| BS647_RS19125 () | 3548642..3549283 | + | 642 | Protein_3457 | Putative defective protein IntQ ; Integrase | Integrase |
| BS647_RS19130 () | 3549715..3550629 | + | 915 | WP_000555620.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| BS647_RS19135 () | 3550629..3551456 | + | 828 | WP_000983722.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| BS647_RS19140 () | 3551453..3552310 | + | 858 | WP_001101728.1 | Manganese transport system membrane protein MntB | ARG |
| BS647_RS19145 () | 3552307..3553164 | + | 858 | WP_000968134.1 | Manganese transport system membrane protein MntB | ARG |
| BS647_RS19150 () | 3553365..3553988 | - | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| BS647_RS19155 () | 3553939..3555207 | - | 1269 | WP_005098694.1 | prophage tail fiber N-terminal domain-containing protein | - |
| BS647_RS19160 () | 3555231..3555775 | - | 545 | Protein_3464 | tail fiber assembly protein | - |
| BS647_RS19170 () | 3555799..3556167 | - | 369 | WP_011069357.1 | hypothetical protein | - |
| BS647_RS19175 () | 3556195..3557100 | - | 906 | Protein_3466 | IS3 family transposase ISSd1 | Transposase |
| BS647_RS19185 () | 3557872..3558024 | - | 153 | Protein_3468 | Rha family transcriptional regulator | - |
| BS647_RS19200 () | 3560392..3561996 | - | 1605 | WP_000615491.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| BS647_RS19225 () | 3562630..3563112 | - | 483 | WP_000068107.1 | ORF6N domain-containing protein | - |
| BS647_RS19230 () | 3563183..3564322 | - | 1140 | WP_000088354.1 | IS3 family transposase ISSd1 | Transposase |
| BS647_RS19235 () | 3564384..3564557 | - | 174 | WP_000504450.1 | hypothetical protein | - |
| BS647_RS19240 () | 3564710..3565264 | - | 555 | WP_000640143.1 | DUF1133 family protein | - |
| BS647_RS19245 () | 3565261..3565551 | - | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| BS647_RS19250 () | 3565551..3566150 | - | 600 | WP_000940329.1 | DUF1367 family protein | - |
| BS647_RS19260 () | 3566284..3566981 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| BS647_RS19270 () | 3567487..3567642 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 3567654..3567712 | + | 59 | - | - | Antitoxin Detail |
| BS647_RS19280 () | 3568097..3568462 | - | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| BS647_RS19285 () | 3568462..3569127 | - | 666 | WP_000208062.1 | hypothetical protein | - |
| BS647_RS19290 () | 3569124..3569489 | - | 366 | WP_001229297.1 | HNH endonuclease signature motif containing protein | - |
| BS647_RS19295 () | 3569491..3569709 | - | 219 | WP_000256998.1 | DUF4014 family protein | - |
| BS647_RS19300 () | 3569802..3570158 | - | 357 | WP_005048249.1 | hypothetical protein | - |
| BS647_RS19305 () | 3570216..3570638 | - | 423 | WP_001118168.1 | DUF977 family protein | - |
| BS647_RS19310 () | 3570653..3571399 | - | 747 | WP_000788996.1 | ATP-binding protein | - |
| BS647_RS28515 () | 3571545..3571714 | - | 170 | Protein_3486 | hypothetical protein | - |
| BS647_RS19320 () | 3572238..3573466 | + | 1229 | WP_167547301.1 | IS3 family transposase IS2 | Transposase |
| BS647_RS19325 () | 3573480..3573890 | - | 411 | Protein_3488 | YdaU family protein | - |
| BS647_RS19330 () | 3573994..3575150 | + | 1157 | WP_094081493.1 | IS3 family transposase IS600 | Transposase |
| BS647_RS19335 () | 3575195..3575629 | - | 435 | Protein_3490 | HTH-type transcriptional regulator PgrR | VF |
| BS647_RS19340 () | 3575767..3576687 | + | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| BS647_RS19345 () | 3576687..3577046 | + | 360 | Protein_3492 | alpha/beta hydrolase | - |
| BS647_RS19350 () | 3577063..3578259 | - | 1197 | WP_005084161.1 | IS110 family transposase ISEc20 | Transposase |
| BS647_RS19355 () | 3578488..3579069 | + | 582 | Protein_3494 | alpha/beta hydrolase | - |
| BS647_RS19360 () | 3579087..3579725 | + | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| BS647_RS19365 () | 3580016..3580744 | + | 729 | WP_005049761.1 | murein tripeptide amidase MpaA | - |
| BS647_RS19370 () | 3580719..3581684 | - | 966 | WP_005049759.1 | L-Ala-D/L-Glu epimerase | - |
| BS647_RS19375 () | 3581803..3582309 | + | 507 | WP_000084387.1 | thiol peroxidase | - |
| BS647_RS19380 () | 3582353..3583894 | - | 1542 | WP_001306544.1 | transcriptional regulator TyrR | - |
| BS647_RS19385 () | 3584042..3585103 | - | 1062 | WP_000138745.1 | YcjF family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|