MGE detailed information
MGE type: Prophage MGE length: 40443 bp
Accession: NZ_CP020342 Location: 2884376..2924818 Organism: Shigella flexneri 1a strain 0439 Replicon: chromosome
Accession: NZ_CP020342 Location: 2884376..2924818 Organism: Shigella flexneri 1a strain 0439 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS647_RS27265 () | 2879502..2881129 | + | 1628 | Protein_2742 | toxic metabolite efflux MATE transporter YeeO | - |
| BS647_RS15155 () | 2881761..2882477 | - | 717 | WP_000532920.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| BS647_RS15160 () | 2882820..2884274 | - | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| BS647_RS15165 () | 2884376..2884582 | - | 207 | WP_000466572.1 | hypothetical protein | - |
| BS647_RS15170 () | 2884583..2885782 | - | 1200 | Protein_2746 | IS3 family transposase IS600 | Transposase |
| BS647_RS15180 () | 2885868..2887036 | + | 1169 | WP_094081534.1 | IS3 family transposase ISLad1 | Transposase |
| BS647_RS15185 () | 2887143..2888405 | - | 1263 | Protein_2748 | Prophage integrase IntA ; Integrase | Integrase |
| BS647_RS15195 () | 2888743..2889540 | - | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| BS647_RS15205 () | 2889751..2890801 | - | 1051 | Protein_2750 | Tyrosine recombinase XerC ; Integrase | Integrase |
| BS647_RS15210 () | 2890801..2890941 | - | 141 | Protein_2751 | DUF4224 domain-containing protein | - |
| BS647_RS15215 () | 2890968..2891384 | + | 417 | WP_005069274.1 | hypothetical protein | - |
| - | 2891966..2892024 | - | 59 | - | - | Antitoxin Detail |
| BS647_RS15230 () | 2892036..2892191 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| BS647_RS15240 () | 2892359..2892637 | + | 279 | WP_011069426.1 | hypothetical protein | - |
| BS647_RS15245 () | 2892639..2893697 | + | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| BS647_RS15250 () | 2893698..2894063 | + | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| BS647_RS15255 () | 2894060..2894748 | + | 689 | Protein_2757 | bacteriophage antitermination protein Q | - |
| BS647_RS15285 () | 2895544..2895759 | + | 216 | WP_000839572.1 | class II holin family protein | - |
| BS647_RS15290 () | 2895858..2896532 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| BS647_RS15295 () | 2896529..2896879 | + | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| BS647_RS15300 () | 2896876..2897373 | + | 498 | Protein_2761 | IS66 family transposase ISSfl3 | Transposase |
| BS647_RS15305 () | 2897429..2898126 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| BS647_RS15310 () | 2898142..2898465 | + | 324 | Protein_2763 | IS66 family transposase ISSfl3 | Transposase |
| BS647_RS15315 () | 2898531..2899687 | + | 1157 | WP_094081529.1 | IS3 family transposase IS600 | Transposase |
| BS647_RS15320 () | 2899712..2900071 | + | 360 | Protein_2765 | hypothetical protein | - |
| BS647_RS15325 () | 2900081..2900242 | + | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| BS647_RS15330 () | 2900239..2901735 | + | 1497 | WP_000155743.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| BS647_RS15335 () | 2901735..2902091 | + | 357 | WP_001062338.1 | phage tail tube protein | - |
| BS647_RS15340 () | 2902091..2902426 | + | 336 | WP_001251340.1 | phage tail assembly protein | - |
| BS647_RS15345 () | 2902511..2904460 | + | 1950 | WP_000785377.1 | phage tail tape measure protein | - |
| BS647_RS15350 () | 2904528..2905010 | + | 483 | WP_000594909.1 | hypothetical protein | - |
| BS647_RS15360 () | 2905858..2906715 | + | 858 | Protein_2773 | IS3 family transposase IS600 | Transposase |
| BS647_RS15365 () | 2906756..2907235 | + | 480 | Protein_2774 | DUF4376 domain-containing protein | - |
| BS647_RS15375 () | 2907415..2909058 | - | 1644 | WP_014532281.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| BS647_RS15380 () | 2909374..2910042 | - | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| BS647_RS15385 () | 2910099..2910368 | + | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| BS647_RS15400 () | 2911446..2912096 | - | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| BS647_RS15405 () | 2912354..2912989 | - | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| BS647_RS15410 () | 2912990..2913994 | - | 1005 | Protein_2780 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| BS647_RS15415 () | 2914103..2914516 | - | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| BS647_RS15420 () | 2914649..2915320 | + | 672 | WP_001347103.1 | putative transcriptional regulatory protein YedW | VF |
| BS647_RS15425 () | 2915320..2916678 | + | 1359 | WP_000826714.1 | two-component system sensor histidine kinase HprS | - |
| BS647_RS15430 () | 2916786..2917637 | - | 852 | WP_000218218.1 | protein deglycase HchA | - |
| BS647_RS15450 () | 2919008..2919178 | - | 171 | Protein_2786 | porin | - |
| BS647_RS15455 () | 2919281..2920509 | + | 1229 | WP_111778310.1 | IS3 family transposase IS2 | Transposase |
| BS647_RS15460 () | 2920521..2921231 | - | 711 | Protein_2788 | porin | - |
| BS647_RS15465 () | 2921348..2922495 | + | 1148 | WP_094081536.1 | IS3 family transposase ISEhe3 | Transposase |
| BS647_RS15470 () | 2922496..2922753 | + | 258 | WP_032155863.1 | cell division protein DrpB | - |
| BS647_RS15475 () | 2922832..2923333 | + | 502 | Protein_2791 | HD domain-containing protein | - |
| BS647_RS15480 () | 2923400..2924818 | + | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| BS647_RS15485 () | 2924799..2925269 | + | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| BS647_RS15490 () | 2925258..2926178 | - | 921 | WP_001212270.1 | drug/metabolite exporter YedA | - |
| BS647_RS15495 () | 2926351..2927268 | + | 918 | WP_000922688.1 | DUF808 domain-containing protein | - |
| BS647_RS15500 () | 2927347..2927529 | + | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| BS647_RS15510 () | 2927700..2929394 | + | 1695 | Protein_2797 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|