MGE detailed information
MGE type: Prophage MGE length: 50165 bp
Accession: NZ_CP020342 Location: 2202..52366 Organism: Shigella flexneri 1a strain 0439 Replicon: chromosome
Accession: NZ_CP020342 Location: 2202..52366 Organism: Shigella flexneri 1a strain 0439 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS647_RS00010 (230) | 230..1615 | + | 1386 | Protein_1 | ISKra4 family transposase | - |
| BS647_RS00015 (1648) | 1648..1863 | + | 216 | Protein_2 | phage N-6-adenine-methyltransferase | - |
| BS647_RS00020 (1860) | 1860..2042 | + | 183 | WP_001254251.1 | NinE family protein | - |
| BS647_RS00025 (2039) | 2039..2209 | + | 171 | WP_000567007.1 | protein NinF | - |
| BS647_RS00030 (2202) | 2202..2813 | + | 612 | WP_001108039.1 | recombination protein NinG | - |
| BS647_RS00035 (2857) | 2857..3344 | + | 488 | Protein_6 | antiterminator | - |
| BS647_RS00045 (3709) | 3709..3924 | + | 216 | WP_000839574.1 | class II holin family protein | - |
| BS647_RS00050 (3924) | 3924..4420 | + | 497 | Protein_8 | lysozyme RrrD | - |
| BS647_RS00055 (4417) | 4417..4860 | + | 444 | WP_023149022.1 | lysis protein | - |
| BS647_RS00060 (4899) | 4899..5147 | + | 249 | WP_252988554.1 | hypothetical protein | - |
| BS647_RS00065 (5390) | 5390..5593 | + | 204 | WP_000699783.1 | hypothetical protein | - |
| BS647_RS00070 (5671) | 5671..6000 | + | 330 | Protein_12 | HNH endonuclease | - |
| BS647_RS00075 (6126) | 6126..6619 | + | 494 | Protein_13 | phage terminase small subunit P27 family | - |
| BS647_RS00080 (6626) | 6626..8346 | + | 1721 | Protein_14 | terminase large subunit | - |
| BS647_RS00085 (8358) | 8358..8540 | + | 183 | WP_000605604.1 | protein YmfR | - |
| BS647_RS00090 (8540) | 8540..9781 | + | 1242 | WP_025755785.1 | phage portal protein | - |
| BS647_RS00095 (9759) | 9759..10409 | + | 651 | WP_001193631.1 | HK97 family phage prohead protease | - |
| BS647_RS00100 (10424) | 10424..11629 | + | 1206 | WP_000257507.1 | phage major capsid protein | - |
| BS647_RS00105 (11679) | 11679..11879 | + | 201 | WP_025755784.1 | hypothetical protein | - |
| BS647_RS00110 (11882) | 11882..12205 | + | 324 | WP_000927710.1 | head-tail connector protein | - |
| BS647_RS00115 (12202) | 12202..12612 | + | 411 | WP_000702398.1 | phage head closure protein | - |
| BS647_RS00120 (12587) | 12587..13093 | + | 507 | WP_000213502.1 | hypothetical protein | - |
| BS647_RS00125 (13090) | 13090..13650 | + | 561 | WP_000779292.1 | hypothetical protein | - |
| BS647_RS00130 (13659) | 13659..13829 | + | 171 | WP_000497751.1 | DUF2635 domain-containing protein | - |
| BS647_RS00135 (13813) | 13813..15309 | + | 1497 | WP_001764254.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| BS647_RS00140 (15290) | 15290..15664 | + | 375 | WP_094081562.1 | phage tail tube protein | - |
| BS647_RS00145 (15664) | 15664..15933 | + | 270 | WP_000661054.1 | phage tail assembly protein | - |
| BS647_RS00155 (16075) | 16075..17910 | + | 1836 | WP_025755782.1 | phage tail tape measure protein | - |
| BS647_RS00160 (17971) | 17971..19299 | + | 1329 | WP_024221349.1 | DNA circularization N-terminal domain-containing protein | - |
| BS647_RS00165 (19296) | 19296..20374 | + | 1079 | Protein_30 | baseplate protein | - |
| BS647_RS00170 (20374) | 20374..20922 | + | 549 | WP_001259079.1 | phage baseplate assembly protein V | - |
| BS647_RS00175 (20922) | 20922..21347 | + | 426 | WP_000424732.1 | phage GP46 family protein | - |
| BS647_RS00180 (21334) | 21334..22392 | + | 1059 | WP_000785314.1 | baseplate J/gp47 family protein | - |
| BS647_RS00185 (22383) | 22383..22967 | + | 585 | WP_001579923.1 | YmfQ family protein | - |
| BS647_RS00190 (22971) | 22971..23621 | + | 651 | WP_001579925.1 | hypothetical protein | - |
| BS647_RS00195 (23593) | 23593..24033 | + | 441 | WP_001223320.1 | tail assembly chaperone | - |
| BS647_RS28130 (24267) | 24267..25787 | - | 1521 | WP_228355687.1 | glycosyltransferase family 39 protein | - |
| BS647_RS00215 (25790) | 25790..26710 | - | 921 | WP_025755781.1 | Prophage bactoprenol glucosyl transferase | VF |
| BS647_RS00220 (26707) | 26707..27069 | - | 363 | WP_000915848.1 | GtrA family protein | - |
| BS647_RS00230 (27331) | 27331..27687 | - | 357 | Protein_40 | integrase | - |
| BS647_RS00240 (29052) | 29052..30261 | + | 1210 | Protein_42 | IS3 family transposase IS629 | Transposase |
| BS647_RS00245 (30245) | 30245..30604 | + | 360 | WP_000563002.1 | hypothetical protein | - |
| BS647_RS00250 (30604) | 30604..30909 | + | 306 | WP_000206732.1 | protein YfdT | - |
| BS647_RS28135 (30909) | 30909..31259 | + | 351 | WP_000433939.1 | helix-turn-helix domain-containing protein | - |
| BS647_RS00260 (31181) | 31181..31852 | + | 672 | Protein_46 | hypothetical protein ; Integrase | Integrase |
| BS647_RS00265 (31918) | 31918..33074 | + | 1157 | WP_094081493.1 | IS3 family transposase IS600 | Transposase |
| BS647_RS00275 (33107) | 33107..33565 | + | 459 | Protein_48 | site-specific integrase | - |
| BS647_RS00285 (33770) | 33770..35023 | - | 1254 | WP_000893267.1 | glutamate-5-semialdehyde dehydrogenase | - |
| BS647_RS00290 (35035) | 35035..36138 | - | 1104 | WP_001285281.1 | glutamate 5-kinase | - |
| BS647_RS00300 (37202) | 37202..38257 | + | 1056 | WP_000749864.1 | phosphoporin PhoE | - |
| BS647_RS00305 (38296) | 38296..38697 | - | 402 | WP_000174678.1 | sigma factor-binding protein Crl | - |
| - (39415) | 39415..39495 | - | 81 | NuclAT_8 | - | - |
| - (39415) | 39415..39495 | - | 81 | NuclAT_8 | - | - |
| - (39415) | 39415..39495 | - | 81 | NuclAT_8 | - | - |
| - (39415) | 39415..39495 | - | 81 | NuclAT_8 | - | - |
| BS647_RS00310 (38755) | 38755..39999 | - | 1245 | WP_000189558.1 | esterase FrsA | - |
| BS647_RS00315 (40091) | 40091..40549 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| BS647_RS00320 (40811) | 40811..42268 | + | 1458 | WP_001293030.1 | cytosol nonspecific dipeptidase | - |
| BS647_RS00325 (42325) | 42325..42885 | - | 561 | Protein_57 | peptide chain release factor H | - |
| BS647_RS00330 (43001) | 43001..44044 | - | 1044 | WP_005053205.1 | RNA ligase RtcB family protein | - |
| BS647_RS00340 (44290) | 44290..44742 | - | 453 | WP_001059860.1 | GNAT family N-acetyltransferase | - |
| BS647_RS00345 (44752) | 44752..45150 | - | 399 | WP_001263491.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| BS647_RS00350 (45153) | 45153..45446 | - | 294 | WP_000554759.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| BS647_RS00355 (45498) | 45498..46553 | - | 1056 | WP_001226172.1 | DNA polymerase IV | - |
| BS647_RS00360 (46624) | 46624..47409 | - | 786 | WP_000207560.1 | Chemotaxis protein LafU | VF |
| BS647_RS00365 (47381) | 47381..49093 | + | 1713 | Protein_64 | Flagellar biosynthesis protein FlhA | VF |
| BS647_RS00370 (49310) | 49310..49807 | - | 498 | WP_000006251.1 | REP-associated tyrosine transposase RayT | - |
| BS647_RS00375 (49983) | 49983..50504 | - | 522 | Protein_66 | Murein DD-endopeptidase MepH | VF |
| BS647_RS00380 (50888) | 50888..51628 | + | 741 | WP_001225676.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| BS647_RS00385 (51599) | 51599..52366 | - | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| BS647_RS00390 (52572) | 52572..53150 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
| BS647_RS00395 (53390) | 53390..55834 | + | 2445 | WP_000973114.1 | acyl-CoA dehydrogenase FadE | - |
| BS647_RS00400 (55877) | 55877..56323 | - | 447 | WP_005100645.1 | Ivy family C-type lysozyme inhibitor | - |
| BS647_RS00405 (56504) | 56504..57274 | + | 771 | WP_001139559.1 | 2-oxoglutaramate amidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|