MGE detailed information
MGE type: Genomic_island MGE length: 51470 bp
Accession: NZ_CP020339 Location: 362025..413494 Organism: Shigella flexneri 4c strain 0702 Replicon: chromosome
Accession: NZ_CP020339 Location: 362025..413494 Organism: Shigella flexneri 4c strain 0702 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS653_RS01930 (358020) | 358020..358808 | + | 789 | WP_005047400.1 | phosphate starvation-inducible protein PhoH | - |
| BS653_RS01940 (360147) | 360147..360675 | + | 529 | Protein_355 | ACP S-malonyltransferase | - |
| BS653_RS01945 (360672) | 360672..361658 | + | 987 | WP_000611853.1 | protein YcdU | - |
| BS653_RS01950 (362025) | 362025..363242 | + | 1218 | WP_000279879.1 | Prophage integrase IntA ; Integrase | Integrase |
| BS653_RS01955 (363412) | 363412..364941 | - | 1530 | WP_005067490.1 | DUF3987 domain-containing protein | - |
| BS653_RS01960 (364913) | 364913..365200 | - | 288 | WP_000070931.1 | AlpA family transcriptional regulator | - |
| BS653_RS01965 (365301) | 365301..367136 | + | 1836 | WP_001258873.1 | hypothetical protein | - |
| BS653_RS01970 (368511) | 368511..369074 | + | 564 | WP_000282110.1 | inovirus-type Gp2 protein | - |
| BS653_RS27320 (369181) | 369181..369527 | + | 347 | Protein_362 | DEAD/DEAH box helicase | - |
| BS653_RS01980 (369591) | 369591..370153 | + | 563 | Protein_363 | inovirus Gp2 family protein | - |
| BS653_RS01985 (370181) | 370181..370522 | + | 342 | WP_000287886.1 | inovirus-type Gp2 protein | - |
| BS653_RS01990 (370562) | 370562..371041 | - | 480 | Protein_365 | IS3 family transposase IS629 | Transposase |
| BS653_RS01995 (371125) | 371125..372632 | - | 1508 | Protein_366 | group II intron reverse transcriptase/maturase | - |
| BS653_RS02010 (373305) | 373305..374044 | - | 740 | Protein_367 | IS3 family transposase IS629 | Transposase |
| BS653_RS02015 (374147) | 374147..374512 | + | 366 | Protein_368 | IS21 family transposase IS100kyp | Transposase |
| BS653_RS02020 (374563) | 374563..374781 | - | 219 | WP_000145481.1 | TetR/AcrR family transcriptional regulator | - |
| BS653_RS02025 (374848) | 374848..376010 | + | 1163 | WP_085949416.1 | IS3 family transposase IS3 | Transposase |
| BS653_RS02030 (376290) | 376290..377567 | - | 1278 | WP_000625669.1 | DUF2254 domain-containing protein | - |
| BS653_RS02040 (377630) | 377630..379627 | - | 1998 | WP_001293435.1 | choline BCCT transporter BetT | - |
| BS653_RS02045 (379781) | 379781..380920 | - | 1140 | WP_094085553.1 | IS3 family transposase ISSd1 | Transposase |
| BS653_RS02050 (381101) | 381101..382044 | - | 944 | Protein_374 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| BS653_RS02055 (382109) | 382109..383058 | - | 950 | Protein_375 | virulence factor VirK | - |
| BS653_RS02060 (383063) | 383063..383551 | - | 489 | Protein_376 | putative hexosyltransferase CapU | - |
| BS653_RS02070 (384324) | 384324..384740 | - | 417 | WP_000275180.1 | Transposon Tn10 TetD protein | VF |
| BS653_RS02075 (384828) | 384828..385421 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| BS653_RS02080 (385534) | 385534..386739 | - | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| BS653_RS02085 (386821) | 386821..387444 | + | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| BS653_RS02090 (387422) | 387422..387811 | - | 390 | Protein_382 | transcriptional regulator | - |
| BS653_RS02105 (388613) | 388613..389451 | - | 839 | Protein_384 | Streptomycin 3''-adenylyltransferase | ARG |
| BS653_RS02110 (389564) | 389564..390394 | - | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| BS653_RS02115 (390604) | 390604..391617 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| BS653_RS26075 (391820) | 391820..392170 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| BS653_RS02125 (392296) | 392296..392856 | + | 561 | WP_000147567.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| BS653_RS02130 (392859) | 392859..395825 | + | 2967 | WP_001138064.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| BS653_RS02135 (395892) | 395892..396269 | + | 378 | WP_000656305.1 | GNAT family N-acetyltransferase | - |
| BS653_RS02140 (396470) | 396470..397129 | - | 660 | WP_000412211.1 | Chloramphenicol acetyltransferase | ARG |
| BS653_RS02160 (397408) | 397408..398105 | + | 698 | WP_227480206.1 | IS1 family transposase IS1R | Transposase |
| BS653_RS02165 (398122) | 398122..398244 | + | 123 | Protein_393 | transcriptional regulator | - |
| BS653_RS02170 (398222) | 398222..398634 | - | 413 | Protein_394 | tetracycline resistance transcriptional repressor TetR(B) | - |
| BS653_RS02175 (398674) | 398674..399371 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| BS653_RS27325 (399554) | 399554..399817 | + | 264 | WP_000466628.1 | DNA polymerase III subunit gamma/tau | - |
| BS653_RS26080 (399937) | 399937..400110 | + | 174 | WP_000088744.1 | DUF905 family protein | - |
| BS653_RS02185 (400210) | 400210..401031 | + | 822 | WP_001234584.1 | DUF932 domain-containing protein | - |
| BS653_RS26090 (401373) | 401373..401846 | + | 474 | WP_005011597.1 | antirestriction protein | - |
| BS653_RS02195 (401862) | 401862..402338 | + | 477 | WP_005011624.1 | RadC family protein | - |
| BS653_RS02200 (402401) | 402401..402622 | + | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| BS653_RS02210 (402785) | 402785..403159 | + | 375 | WP_001280958.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| BS653_RS02215 (403206) | 403206..403580 | + | 375 | WP_000854917.1 | TA system toxin CbtA family protein | Toxin Detail |
| BS653_RS02220 (403577) | 403577..404068 | + | 492 | WP_000976828.1 | DUF5983 family protein | - |
| BS653_RS02225 (404080) | 404080..404277 | + | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| BS653_RS02230 (404362) | 404362..404922 | + | 561 | Protein_406 | DUF4942 domain-containing protein | - |
| BS653_RS02235 (404994) | 404994..405998 | + | 1005 | WP_001179707.1 | IS110 family transposase ISSfl8 | Transposase |
| BS653_RS02240 (406280) | 406280..406561 | + | 282 | Protein_408 | DUF4942 domain-containing protein | - |
| BS653_RS02250 (407033) | 407033..407971 | + | 939 | Protein_409 | glyoxylate/hydroxypyruvate reductase GhrA | - |
| BS653_RS02255 (408026) | 408026..408763 | + | 738 | WP_000283673.1 | zinc-binding phosphatase | - |
| BS653_RS02260 (408787) | 408787..409341 | + | 555 | WP_001001915.1 | molecular chaperone YcdY | - |
| BS653_RS02265 (409443) | 409443..409934 | + | 492 | WP_001297187.1 | DUF1097 domain-containing protein | - |
| BS653_RS02270 (409998) | 409998..410773 | - | 776 | Protein_413 | curli production assembly/transport protein CsgG | - |
| BS653_RS02275 (410800) | 410800..411216 | - | 417 | WP_001264088.1 | Curli production assembly/transport component CsgF | VF |
| BS653_RS02280 (411241) | 411241..411630 | - | 390 | WP_000833291.1 | Curli production assembly/transport component CsgE | VF |
| BS653_RS02285 (411635) | 411635..412285 | - | 651 | WP_000481500.1 | CsgBAC operon transcriptional regulatory protein | VF |
| BS653_RS02300 (413039) | 413039..413494 | + | 456 | WP_005047380.1 | Minor curlin subunit | VF |
| BS653_RS02305 (413535) | 413535..413642 | + | 108 | Protein_418 | curlin | - |
| BS653_RS02310 (413708) | 413708..414743 | + | 1036 | Protein_419 | IS3 family transposase | - |
| BS653_RS02315 (414770) | 414770..415135 | + | 366 | WP_001144017.1 | curli major subunit CsgA | - |
| BS653_RS26800 (415194) | 415194..415350 | + | 157 | Protein_421 | curli assembly protein CsgC | - |
| BS653_RS02330 (416587) | 416587..416778 | + | 192 | Protein_423 | curli assembly protein CsgC | - |
| BS653_RS02335 (416899) | 416899..417210 | + | 312 | WP_000489563.1 | protein YmdA | - |
| BS653_RS02340 (417305) | 417305..417838 | + | 534 | WP_000857408.1 | O-acetyl-ADP-ribose deacetylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|