MGE detailed information
MGE type: Prophage MGE length: 44613 bp
Accession: NZ_CP020336 Location: 2205106..2249718 Organism: Shigella flexneri 4c strain 1602 Replicon: chromosome
Accession: NZ_CP020336 Location: 2205106..2249718 Organism: Shigella flexneri 4c strain 1602 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS654_RS12335 () | 2200154..2200825 | - | 672 | WP_001347103.1 | response regulator transcription factor HprR | - |
| BS654_RS12340 () | 2200958..2201371 | + | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| BS654_RS12345 () | 2201480..2202484 | + | 1005 | Protein_2260 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| BS654_RS12350 () | 2202485..2203120 | + | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| BS654_RS12355 () | 2203378..2204028 | + | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| BS654_RS12370 () | 2205106..2205375 | - | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| BS654_RS12375 () | 2205432..2206100 | + | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| BS654_RS12380 () | 2206416..2208059 | + | 1644 | WP_014532281.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| BS654_RS12390 () | 2208239..2208718 | - | 480 | Protein_2266 | DUF4376 domain-containing protein | - |
| BS654_RS12395 () | 2208759..2209616 | - | 858 | Protein_2267 | IS3 family transposase IS600 | Transposase |
| BS654_RS12400 () | 2209674..2210371 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| BS654_RS12405 () | 2210464..2210946 | - | 483 | WP_000594909.1 | hypothetical protein | - |
| BS654_RS12410 () | 2211014..2212963 | - | 1950 | WP_000785377.1 | phage tail tape measure protein | - |
| BS654_RS12415 () | 2213048..2213383 | - | 336 | WP_001251340.1 | phage tail assembly protein | - |
| BS654_RS12420 () | 2213383..2213739 | - | 357 | WP_001062338.1 | phage tail tube protein | - |
| BS654_RS12425 () | 2213739..2215235 | - | 1497 | WP_094085503.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| BS654_RS12430 () | 2215232..2215393 | - | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| BS654_RS12435 () | 2215403..2215762 | - | 360 | Protein_2275 | hypothetical protein | - |
| BS654_RS12445 () | 2217009..2217821 | - | 813 | Protein_2277 | IS66 family transposase ISSfl3 | Transposase |
| BS654_RS12450 () | 2217818..2218168 | - | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| BS654_RS12455 () | 2218165..2218839 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| BS654_RS12460 () | 2218938..2219153 | - | 216 | WP_000839572.1 | class II holin family protein | - |
| BS654_RS12490 () | 2219949..2220637 | - | 689 | Protein_2281 | bacteriophage antitermination protein Q | - |
| BS654_RS12495 () | 2220634..2220999 | - | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| BS654_RS12500 () | 2221000..2222058 | - | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| BS654_RS12505 () | 2222060..2222338 | - | 279 | WP_011069426.1 | hypothetical protein | - |
| BS654_RS12515 () | 2222506..2222661 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 2222673..2222731 | + | 59 | - | - | Antitoxin Detail |
| BS654_RS12530 () | 2223313..2223729 | - | 417 | WP_005069274.1 | hypothetical protein | - |
| BS654_RS12535 () | 2223756..2223896 | + | 141 | Protein_2287 | DUF4224 domain-containing protein | - |
| BS654_RS12540 () | 2223896..2224946 | + | 1051 | Protein_2288 | Tyrosine recombinase XerC ; Integrase | Integrase |
| BS654_RS12550 () | 2225157..2225954 | + | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| BS654_RS12560 () | 2226292..2227554 | + | 1263 | Protein_2290 | Prophage integrase IntA ; Integrase | Integrase |
| BS654_RS12570 () | 2228924..2230123 | + | 1200 | Protein_2292 | IS3 family transposase IS600 | Transposase |
| BS654_RS12575 () | 2230124..2230330 | + | 207 | WP_000466572.1 | hypothetical protein | - |
| BS654_RS12580 () | 2230432..2231886 | + | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| BS654_RS12585 () | 2232229..2232945 | + | 717 | WP_000532920.1 | putative transcriptional regulatory protein YeeN | VF |
| BS654_RS27715 () | 2233577..2235204 | - | 1628 | Protein_2296 | toxic metabolite efflux MATE transporter YeeO | - |
| BS654_RS12615 () | 2235322..2236272 | - | 951 | WP_001010988.1 | HTH-type transcriptional regulator Cbl | - |
| BS654_RS12620 () | 2236374..2237291 | - | 918 | WP_001011445.1 | nitrogen assimilation transcriptional regulator NAC | - |
| BS654_RS12630 () | 2237750..2238685 | - | 936 | WP_000986341.1 | L,D-transpeptidase | - |
| BS654_RS12635 () | 2238747..2239826 | - | 1080 | WP_001165576.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| BS654_RS12640 () | 2239838..2240581 | - | 744 | WP_005049317.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| BS654_RS12645 () | 2240578..2241087 | - | 510 | WP_000261572.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| BS654_RS12655 () | 2242320..2242607 | - | 288 | Protein_2304 | transposase | - |
| BS654_RS12665 () | 2243938..2244843 | - | 906 | Protein_2306 | IS66 family transposase ISSfl3 | Transposase |
| BS654_RS12670 () | 2244840..2245190 | - | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| BS654_RS12675 () | 2245187..2245861 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| BS654_RS12685 () | 2245943..2246779 | - | 837 | Protein_2309 | Prophage integrase IntA ; Integrase | Integrase |
| BS654_RS12690 () | 2246961..2248385 | + | 1425 | WP_000132548.1 | exodeoxyribonuclease I | - |
| BS654_RS12695 () | 2248428..2248655 | - | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| BS654_RS12700 () | 2248669..2249727 | - | 1059 | WP_000492293.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| BS654_RS12705 () | 2249906..2251264 | - | 1359 | WP_000019203.1 | putrescine/proton symporter PlaP | - |
| BS654_RS27725 () | 2251254..2251316 | - | 63 | WP_097433929.1 | membrane protein YoeI | - |
| BS654_RS12710 () | 2251477..2252460 | - | 984 | WP_000803326.1 | LysR substrate-binding domain-containing protein | - |
| BS654_RS12715 () | 2252506..2253330 | - | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| BS654_RS12720 () | 2253413..2253667 | - | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| BS654_RS12730 () | 2254420..2254692 | - | 273 | WP_001259256.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|