MGE detailed information
MGE type: Prophage MGE length: 64126 bp
Accession: NZ_CP020336 Location: 1540911..1605036 Organism: Shigella flexneri 4c strain 1602 Replicon: chromosome
Accession: NZ_CP020336 Location: 1540911..1605036 Organism: Shigella flexneri 4c strain 1602 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS654_RS08395 () | 1536815..1537453 | - | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| BS654_RS08400 () | 1537471..1538052 | - | 582 | Protein_1547 | alpha/beta hydrolase | - |
| BS654_RS08405 () | 1538281..1539477 | + | 1197 | WP_025760540.1 | IS110-like element ISSfl4 family transposase | - |
| BS654_RS08410 () | 1539494..1539853 | - | 360 | Protein_1549 | alpha/beta hydrolase | - |
| BS654_RS08415 () | 1539853..1540773 | - | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| BS654_RS08420 () | 1540911..1541345 | + | 435 | Protein_1551 | HTH-type transcriptional regulator PgrR | VF |
| BS654_RS08430 () | 1542650..1543060 | + | 411 | Protein_1553 | YdaU family protein | - |
| BS654_RS28890 () | 1544826..1544995 | + | 170 | Protein_1555 | hypothetical protein | - |
| BS654_RS08445 () | 1545141..1545887 | + | 747 | WP_094085497.1 | ATP-binding protein | - |
| BS654_RS08450 () | 1545902..1546324 | + | 423 | WP_001118168.1 | DUF977 family protein | - |
| BS654_RS08455 () | 1546382..1546738 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| BS654_RS08460 () | 1546831..1547049 | + | 219 | WP_000256998.1 | DUF4014 family protein | - |
| BS654_RS08465 () | 1547051..1547416 | + | 366 | Protein_1560 | HNH endonuclease | - |
| BS654_RS08470 () | 1547413..1548078 | + | 666 | WP_000208062.1 | hypothetical protein | - |
| BS654_RS08475 () | 1548078..1548443 | + | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| - | 1548828..1548886 | - | 59 | - | - | Antitoxin Detail |
| BS654_RS08485 () | 1548898..1549053 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| BS654_RS08505 () | 1550390..1550989 | + | 600 | WP_000940329.1 | DUF1367 family protein | - |
| BS654_RS08510 () | 1550989..1551279 | + | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| BS654_RS08515 () | 1551276..1551830 | + | 555 | WP_000640143.1 | DUF1133 family protein | - |
| BS654_RS08520 () | 1551983..1552156 | + | 174 | WP_000504450.1 | hypothetical protein | - |
| BS654_RS08525 () | 1552218..1553357 | + | 1140 | WP_000088353.1 | IS3 family transposase IS600 | Transposase |
| BS654_RS08530 () | 1553428..1553910 | + | 483 | WP_000068107.1 | ORF6N domain-containing protein | - |
| BS654_RS08555 () | 1554544..1556148 | + | 1605 | WP_000615491.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| BS654_RS08565 () | 1556970..1557658 | + | 689 | Protein_1572 | IS3-like element IS911 family transposase | - |
| BS654_RS08580 () | 1558331..1559839 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| BS654_RS08585 () | 1559920..1560408 | + | 489 | Protein_1574 | IS3 family transposase ISLad1 | Transposase |
| BS654_RS08590 () | 1560786..1560938 | + | 153 | Protein_1575 | Rha family transcriptional regulator | - |
| BS654_RS08595 () | 1560997..1561694 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| BS654_RS08600 () | 1561710..1562615 | + | 906 | Protein_1577 | IS3 family transposase ISSd1 | Transposase |
| BS654_RS08605 () | 1562643..1563011 | + | 369 | WP_011069357.1 | hypothetical protein | - |
| BS654_RS08615 () | 1563035..1563579 | + | 545 | Protein_1579 | tail fiber assembly protein | - |
| BS654_RS08620 () | 1563603..1564871 | + | 1269 | WP_005098694.1 | prophage tail fiber N-terminal domain-containing protein | - |
| BS654_RS08625 () | 1564822..1565446 | + | 625 | Protein_1581 | DUF4376 domain-containing protein | - |
| BS654_RS08630 () | 1565647..1566504 | - | 858 | WP_000968134.1 | Manganese transport system membrane protein MntB | ARG |
| BS654_RS08635 () | 1566501..1567358 | - | 858 | WP_001101728.1 | Manganese transport system membrane protein MntB | ARG |
| BS654_RS08640 () | 1567355..1568182 | - | 828 | WP_000983722.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| BS654_RS08645 () | 1568182..1569096 | - | 915 | WP_000555620.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| BS654_RS08650 () | 1569528..1570169 | - | 642 | Protein_1586 | Putative defective protein IntQ ; Integrase | Integrase |
| BS654_RS08655 () | 1570223..1570920 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| BS654_RS08660 () | 1570937..1571107 | - | 171 | Protein_1588 | DUF3596 domain-containing protein | - |
| BS654_RS08665 () | 1571109..1571276 | - | 168 | WP_005049823.1 | excisionase family protein | - |
| BS654_RS08670 () | 1571324..1572533 | - | 1210 | Protein_1590 | IS3 family transposase IS629 | Transposase |
| BS654_RS08675 () | 1572608..1573705 | - | 1098 | WP_001173294.1 | AAA family ATPase | - |
| BS654_RS08680 () | 1573711..1573971 | - | 261 | WP_005135630.1 | host-nuclease inhibitor Gam family protein | - |
| BS654_RS08685 () | 1574070..1575226 | + | 1157 | Protein_1593 | IS3 family transposase IS600 | Transposase |
| BS654_RS08690 () | 1575283..1576698 | - | 1416 | Protein_1594 | exodeoxyribonuclease VIII | - |
| BS654_RS08695 () | 1576798..1577073 | - | 276 | WP_005049830.1 | hypothetical protein | - |
| BS654_RS08700 () | 1577148..1577318 | - | 171 | WP_001359121.1 | YdaE family protein | - |
| BS654_RS08705 () | 1577318..1577539 | - | 222 | WP_000560210.1 | cell division protein FtsZ | - |
| BS654_RS08715 () | 1578886..1579774 | - | 889 | Protein_1599 | Rha family transcriptional regulator | - |
| BS654_RS28345 () | 1580998..1581378 | + | 381 | Protein_1600 | IS66 family transposase ISSfl3 | Transposase |
| BS654_RS28350 () | 1581380..1581547 | + | 168 | Protein_1601 | IS66 family transposase ISSfl3 | Transposase |
| BS654_RS08740 () | 1581498..1582121 | + | 624 | WP_000930142.1 | DUF4376 domain-containing protein | - |
| BS654_RS28895 () | 1582127..1582231 | + | 105 | Protein_1603 | tail fiber assembly protein | - |
| BS654_RS08750 () | 1582301..1584016 | - | 1716 | WP_128568580.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| BS654_RS08755 () | 1584558..1585255 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| BS654_RS08760 () | 1585535..1585981 | + | 447 | Protein_1606 | metallophosphoesterase | - |
| BS654_RS08765 () | 1586046..1587202 | + | 1157 | WP_094085510.1 | IS3 family transposase IS600 | Transposase |
| BS654_RS08770 () | 1587246..1587434 | + | 189 | Protein_1608 | serine/threonine-protein phosphatase | - |
| BS654_RS08775 () | 1587459..1587650 | - | 192 | WP_005049838.1 | YebW family protein | - |
| BS654_RS08780 () | 1587755..1587991 | - | 237 | WP_001295499.1 | YebV family protein | - |
| BS654_RS08785 () | 1588109..1589548 | - | 1440 | Protein_1611 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BS654_RS08790 () | 1589628..1592248 | - | 2621 | Protein_1612 | hypothetical protein | VF |
| BS654_RS08795 () | 1592217..1593500 | - | 1284 | WP_001207280.1 | membrane integrity lipid transport subunit YebS | - |
| BS654_RS08800 () | 1593630..1594127 | + | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| BS654_RS08805 () | 1594224..1594922 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| BS654_RS08810 () | 1594942..1596990 | + | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| BS654_RS08815 () | 1597182..1598063 | + | 882 | WP_000984517.1 | protease HtpX | - |
| BS654_RS08820 () | 1598109..1599482 | - | 1374 | WP_001127218.1 | MFS transporter | - |
| BS654_RS08825 () | 1599659..1600450 | + | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| BS654_RS08830 () | 1600593..1600832 | - | 240 | WP_001211010.1 | YobH family protein | - |
| BS654_RS08835 () | 1600991..1601134 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| BS654_RS08840 () | 1601209..1601496 | + | 288 | WP_001006860.1 | YebO family protein | - |
| BS654_RS08850 () | 1602167..1602310 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| BS654_RS08855 () | 1602323..1602532 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| BS654_RS08860 () | 1602698..1603507 | + | 810 | WP_000010128.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| BS654_RS08865 () | 1603504..1604070 | - | 567 | WP_001668667.1 | manganese efflux pump MntP | - |
| BS654_RS08880 () | 1605259..1605735 | - | 477 | WP_000156246.1 | DUF986 family protein | - |
| BS654_RS08885 () | 1605790..1606641 | - | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| BS654_RS08890 () | 1606654..1607454 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| BS654_RS08895 () | 1607517..1608488 | - | 972 | WP_000150543.1 | PTS mannose transporter subunit IIAB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|