MGE detailed information
MGE type: Prophage MGE length: 71493 bp
Accession: NZ_CP020086 Location: 4055255..4126747 Organism: Shigella flexneri 1a strain 0670 Replicon: chromosome
Accession: NZ_CP020086 Location: 4055255..4126747 Organism: Shigella flexneri 1a strain 0670 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B4376_RS21995 (4050670) | 4050670..4051125 | - | 456 | WP_000194195.1 | hypothetical protein | - |
| B4376_RS22000 (4051122) | 4051122..4051457 | - | 336 | Protein_3958 | DUF2773 domain-containing protein | - |
| B4376_RS22010 (4051612) | 4051612..4051896 | - | 285 | WP_000941942.1 | pyrimidine/purine nucleoside phosphorylase | - |
| B4376_RS22015 (4051968) | 4051968..4052645 | - | 678 | WP_001276420.1 | AroM family protein | - |
| B4376_RS22025 (4052903) | 4052903..4053094 | - | 192 | WP_001142439.1 | protein YaiA | - |
| B4376_RS22030 (4053144) | 4053144..4053668 | - | 525 | WP_000193385.1 | shikimate kinase AroL | - |
| B4376_RS22035 (4053851) | 4053851..4054309 | - | 459 | WP_000158164.1 | YaiI/YqxD family protein | - |
| B4376_RS22040 (4054429) | 4054429..4055238 | + | 810 | WP_001295331.1 | pyrroline-5-carboxylate reductase | - |
| B4376_RS22045 (4055255) | 4055255..4056370 | - | 1116 | WP_005053118.1 | diguanylate cyclase AdrA | - |
| B4376_RS22050 (4056521) | 4056521..4057730 | + | 1210 | Protein_3966 | IS3 family transposase IS629 | Transposase |
| B4376_RS22055 (4057714) | 4057714..4058912 | + | 1199 | WP_094092420.1 | IS3 family transposase ISSd1 | Transposase |
| B4376_RS22060 (4059039) | 4059039..4059662 | + | 624 | WP_005060548.1 | hypothetical protein | - |
| B4376_RS22065 (4059716) | 4059716..4060888 | - | 1173 | WP_000551008.1 | acyltransferase | - |
| B4376_RS22070 (4061237) | 4061237..4061695 | - | 459 | Protein_3970 | site-specific integrase | - |
| B4376_RS22085 (4062950) | 4062950..4063621 | - | 672 | Protein_3972 | hypothetical protein ; Integrase | Integrase |
| B4376_RS28515 (4063543) | 4063543..4063893 | - | 351 | WP_000433939.1 | helix-turn-helix domain-containing protein | - |
| B4376_RS22095 (4063893) | 4063893..4064198 | - | 306 | WP_000206732.1 | protein YfdT | - |
| B4376_RS22100 (4064198) | 4064198..4064557 | - | 360 | WP_000563002.1 | hypothetical protein | - |
| B4376_RS22105 (4064541) | 4064541..4065020 | - | 480 | Protein_3976 | IS3 family transposase IS629 | Transposase |
| B4376_RS22110 (4065104) | 4065104..4066612 | - | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| B4376_RS22125 (4067285) | 4067285..4068020 | - | 736 | Protein_3978 | IS3 family transposase | - |
| B4376_RS22130 (4068183) | 4068183..4069339 | + | 1157 | WP_094081492.1 | IS3 family transposase ISSd1 | Transposase |
| B4376_RS22135 (4069385) | 4069385..4069741 | + | 357 | Protein_3980 | integrase | - |
| B4376_RS22145 (4070003) | 4070003..4070365 | + | 363 | WP_000915848.1 | GtrA family protein | - |
| B4376_RS22150 (4070362) | 4070362..4071282 | + | 921 | WP_025755781.1 | Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase | VF |
| B4376_RS28520 (4071285) | 4071285..4072805 | + | 1521 | WP_228355687.1 | glycosyltransferase family 39 protein | - |
| B4376_RS22170 (4073039) | 4073039..4073479 | - | 441 | WP_001223320.1 | tail assembly chaperone | - |
| B4376_RS22175 (4073451) | 4073451..4074101 | - | 651 | WP_001579925.1 | hypothetical protein | - |
| B4376_RS22180 (4074105) | 4074105..4074689 | - | 585 | WP_001579923.1 | YmfQ family protein | - |
| B4376_RS22185 (4074680) | 4074680..4075738 | - | 1059 | WP_000785314.1 | baseplate J/gp47 family protein | - |
| B4376_RS22190 (4075725) | 4075725..4076150 | - | 426 | WP_000424732.1 | phage GP46 family protein | - |
| B4376_RS22195 (4076150) | 4076150..4076698 | - | 549 | WP_001259079.1 | phage baseplate assembly protein V | - |
| B4376_RS22200 (4076698) | 4076698..4077777 | - | 1080 | WP_024221350.1 | baseplate protein | - |
| B4376_RS22205 (4077774) | 4077774..4079102 | - | 1329 | WP_024221349.1 | DNA circularization N-terminal domain-containing protein | - |
| B4376_RS22210 (4079163) | 4079163..4080998 | - | 1836 | WP_025755782.1 | phage tail tape measure protein | - |
| B4376_RS22215 (4080991) | 4080991..4081173 | - | 183 | WP_001314907.1 | hypothetical protein | - |
| B4376_RS22220 (4081140) | 4081140..4081409 | - | 270 | WP_000661054.1 | phage tail assembly protein | - |
| B4376_RS22225 (4081409) | 4081409..4081765 | - | 357 | WP_000090998.1 | phage tail tube protein | - |
| B4376_RS22230 (4081765) | 4081765..4083261 | - | 1497 | WP_001764254.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| B4376_RS22235 (4083245) | 4083245..4083415 | - | 171 | WP_000497751.1 | DUF2635 domain-containing protein | - |
| B4376_RS22240 (4083424) | 4083424..4083984 | - | 561 | WP_000779292.1 | hypothetical protein | - |
| B4376_RS22245 (4083981) | 4083981..4084487 | - | 507 | WP_000213502.1 | hypothetical protein | - |
| B4376_RS22250 (4084462) | 4084462..4084872 | - | 411 | WP_000702398.1 | phage head closure protein | - |
| B4376_RS22255 (4084869) | 4084869..4085192 | - | 324 | WP_000927710.1 | head-tail connector protein | - |
| B4376_RS22260 (4085195) | 4085195..4085395 | - | 201 | WP_025755784.1 | hypothetical protein | - |
| B4376_RS22265 (4085445) | 4085445..4086650 | - | 1206 | WP_000257507.1 | phage major capsid protein | - |
| B4376_RS22270 (4086665) | 4086665..4087315 | - | 651 | WP_001193631.1 | HK97 family phage prohead protease | - |
| B4376_RS22275 (4087293) | 4087293..4088534 | - | 1242 | WP_025755785.1 | phage portal protein | - |
| B4376_RS22280 (4088534) | 4088534..4088716 | - | 183 | WP_000605604.1 | protein YmfR | - |
| B4376_RS22285 (4088728) | 4088728..4090461 | - | 1734 | WP_021578636.1 | terminase large subunit | - |
| B4376_RS22290 (4090458) | 4090458..4090952 | - | 495 | WP_000929175.1 | phage terminase small subunit P27 family | - |
| B4376_RS22295 (4091078) | 4091078..4091428 | - | 351 | WP_001135206.1 | HNH endonuclease signature motif containing protein | - |
| B4376_RS22300 (4091494) | 4091494..4091697 | - | 204 | WP_000699783.1 | hypothetical protein | - |
| B4376_RS22305 (4091815) | 4091815..4092189 | - | 375 | WP_001544773.1 | hypothetical protein | - |
| B4376_RS22310 (4092228) | 4092228..4092671 | - | 444 | WP_001544774.1 | lysis protein | - |
| B4376_RS22315 (4092668) | 4092668..4093165 | - | 498 | WP_001135290.1 | lysozyme RrrD | - |
| B4376_RS22320 (4093165) | 4093165..4093380 | - | 216 | WP_000839582.1 | phage lysis protein EssD | - |
| B4376_RS22325 (4093569) | 4093569..4094300 | - | 732 | WP_001146308.1 | helix-turn-helix domain-containing protein | - |
| B4376_RS22330 (4094652) | 4094652..4095611 | - | 960 | WP_000592546.1 | DUF523 and DUF1722 domain-containing protein | - |
| B4376_RS22335 (4095804) | 4095804..4096328 | + | 525 | WP_001544776.1 | lipocalin family protein | - |
| B4376_RS22340 (4096484) | 4096484..4096861 | - | 378 | WP_001204777.1 | antiterminator Q family protein | - |
| B4376_RS22345 (4096879) | 4096879..4097868 | - | 990 | WP_024258735.1 | DUF968 domain-containing protein | - |
| B4376_RS22350 (4097876) | 4097876..4098685 | - | 810 | WP_001061445.1 | KilA-N domain-containing protein | - |
| B4376_RS22355 (4098705) | 4098705..4099094 | - | 390 | WP_000767113.1 | RusA family crossover junction endodeoxyribonuclease | - |
| B4376_RS22360 (4099091) | 4099091..4099417 | - | 327 | WP_000210155.1 | LexA family transcriptional regulator | - |
| B4376_RS22365 (4099414) | 4099414..4100067 | - | 654 | WP_001355692.1 | phage N-6-adenine-methyltransferase | - |
| B4376_RS22370 (4100067) | 4100067..4100561 | - | 495 | WP_077697670.1 | PerC family transcriptional regulator | - |
| B4376_RS22375 (4100558) | 4100558..4101499 | - | 942 | WP_000104967.1 | helix-turn-helix domain-containing protein | - |
| B4376_RS22380 (4101489) | 4101489..4101668 | - | 180 | WP_023148278.1 | DUF4222 domain-containing protein | - |
| B4376_RS22385 (4101844) | 4101844..4102395 | - | 552 | WP_000515830.1 | protein YmfL | - |
| B4376_RS22390 (4102439) | 4102439..4102639 | - | 201 | WP_000649477.1 | YdaS family helix-turn-helix protein | - |
| B4376_RS22395 (4102730) | 4102730..4103404 | + | 675 | WP_000848748.1 | LexA family transcriptional repressor | - |
| B4376_RS22400 (4103639) | 4103639..4103845 | + | 207 | WP_000549623.1 | hypothetical protein | - |
| B4376_RS22405 (4103817) | 4103817..4104251 | - | 435 | WP_000016389.1 | hypothetical protein | - |
| B4376_RS27530 (4104395) | 4104395..4104705 | + | 311 | Protein_4032 | hypothetical protein | - |
| B4376_RS22420 (4104720) | 4104720..4105082 | + | 363 | WP_000135682.1 | protein YfdP | - |
| B4376_RS22425 (4105148) | 4105148..4105972 | + | 825 | WP_025755788.1 | DUF2303 family protein | - |
| B4376_RS22430 (4106100) | 4106100..4106636 | + | 537 | WP_000008200.1 | 5'-deoxynucleotidase | - |
| B4376_RS22435 (4106627) | 4106627..4106989 | + | 363 | WP_089075656.1 | hypothetical protein | - |
| B4376_RS22440 (4106989) | 4106989..4107294 | + | 306 | WP_000206732.1 | protein YfdT | - |
| B4376_RS28525 (4107294) | 4107294..4107644 | + | 351 | WP_000433939.1 | helix-turn-helix domain-containing protein | - |
| B4376_RS22450 (4107566) | 4107566..4108684 | + | 1119 | WP_001132557.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| B4376_RS22460 (4108889) | 4108889..4110142 | - | 1254 | WP_000893267.1 | glutamate-5-semialdehyde dehydrogenase | - |
| B4376_RS22465 (4110154) | 4110154..4111257 | - | 1104 | WP_001285281.1 | glutamate 5-kinase | - |
| B4376_RS22475 (4112321) | 4112321..4113376 | + | 1056 | WP_094092421.1 | phosphoporin PhoE | - |
| B4376_RS22480 (4113415) | 4113415..4113816 | - | 402 | WP_000174678.1 | sigma factor-binding protein Crl | - |
| - (4114534) | 4114534..4114614 | - | 81 | NuclAT_8 | - | - |
| - (4114534) | 4114534..4114614 | - | 81 | NuclAT_8 | - | - |
| - (4114534) | 4114534..4114614 | - | 81 | NuclAT_8 | - | - |
| - (4114534) | 4114534..4114614 | - | 81 | NuclAT_8 | - | - |
| B4376_RS22485 (4113874) | 4113874..4115118 | - | 1245 | WP_000189558.1 | esterase FrsA | - |
| B4376_RS22490 (4115210) | 4115210..4115668 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| B4376_RS22495 (4115930) | 4115930..4117387 | + | 1458 | WP_001293030.1 | cytosol nonspecific dipeptidase | - |
| B4376_RS22500 (4117444) | 4117444..4118004 | - | 561 | Protein_4048 | peptide chain release factor H | - |
| B4376_RS22505 (4118120) | 4118120..4119163 | - | 1044 | WP_005053205.1 | RNA ligase RtcB family protein | - |
| B4376_RS22515 (4119409) | 4119409..4119861 | - | 453 | WP_001059860.1 | GNAT family N-acetyltransferase | - |
| B4376_RS22520 (4119871) | 4119871..4120269 | - | 399 | WP_001263491.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| B4376_RS22525 (4120272) | 4120272..4120565 | - | 294 | WP_000554759.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| B4376_RS22530 (4120617) | 4120617..4121672 | - | 1056 | WP_001226172.1 | DNA polymerase IV | - |
| B4376_RS22535 (4121743) | 4121743..4122528 | - | 786 | WP_000207560.1 | hypothetical protein | VF |
| B4376_RS22540 (4122500) | 4122500..4124212 | + | 1713 | Protein_4055 | hypothetical protein | VF |
| B4376_RS22545 (4124429) | 4124429..4124926 | - | 498 | WP_000006251.1 | REP-associated tyrosine transposase RayT | - |
| B4376_RS22550 (4125102) | 4125102..4125623 | - | 522 | Protein_4057 | hypothetical protein | VF |
| B4376_RS22555 (4126007) | 4126007..4126747 | + | 741 | WP_001225676.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| B4376_RS22560 (4126718) | 4126718..4127485 | - | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| B4376_RS22565 (4127691) | 4127691..4128269 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
| B4376_RS22570 (4128509) | 4128509..4130953 | + | 2445 | WP_000973114.1 | acyl-CoA dehydrogenase FadE | - |
| B4376_RS22575 (4130996) | 4130996..4131442 | - | 447 | WP_005100645.1 | Ivy family C-type lysozyme inhibitor | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|