MGE detailed information
MGE type: Genomic_island MGE length: 54357 bp
Accession: NZ_CP020086 Location: 3280170..3334526 Organism: Shigella flexneri 1a strain 0670 Replicon: chromosome
Accession: NZ_CP020086 Location: 3280170..3334526 Organism: Shigella flexneri 1a strain 0670 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B4376_RS17765 (3276397) | 3276397..3277905 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| B4376_RS17770 (3277986) | 3277986..3278474 | + | 489 | Protein_3196 | IS3 family transposase | - |
| B4376_RS27965 (3278471) | 3278471..3278627 | - | 157 | Protein_3197 | curli assembly protein CsgC | - |
| B4376_RS17780 (3278686) | 3278686..3279051 | - | 366 | WP_001144017.1 | curli major subunit CsgA | - |
| B4376_RS17785 (3279078) | 3279078..3280113 | - | 1036 | Protein_3199 | IS3 family transposase | - |
| B4376_RS17790 (3280179) | 3280179..3280286 | - | 108 | Protein_3200 | hypothetical protein | VF |
| B4376_RS17795 (3280327) | 3280327..3280782 | - | 456 | WP_005047380.1 | hypothetical protein | VF |
| B4376_RS17810 (3281536) | 3281536..3282186 | + | 651 | WP_000481500.1 | HTH-type transcriptional regulator MalT | VF |
| B4376_RS17815 (3282191) | 3282191..3282580 | + | 390 | WP_000833291.1 | hypothetical protein | VF |
| B4376_RS17820 (3282605) | 3282605..3283021 | + | 417 | WP_001264088.1 | hypothetical protein | VF |
| B4376_RS17825 (3283048) | 3283048..3283823 | + | 776 | Protein_3205 | curli production assembly/transport protein CsgG | - |
| B4376_RS17830 (3283887) | 3283887..3284378 | - | 492 | WP_001297187.1 | DUF1097 domain-containing protein | - |
| B4376_RS17835 (3284480) | 3284480..3285034 | - | 555 | WP_001001915.1 | molecular chaperone YcdY | - |
| B4376_RS17840 (3285058) | 3285058..3285795 | - | 738 | WP_000283673.1 | zinc-binding phosphatase | - |
| B4376_RS17845 (3285850) | 3285850..3286788 | - | 939 | Protein_3209 | glyoxylate/hydroxypyruvate reductase GhrA | - |
| B4376_RS17855 (3287260) | 3287260..3287541 | - | 282 | Protein_3210 | DUF4942 domain-containing protein | - |
| B4376_RS17860 (3287823) | 3287823..3288827 | - | 1005 | WP_001179707.1 | IS110 family transposase ISSfl8 | Transposase |
| B4376_RS17865 (3288899) | 3288899..3289459 | - | 561 | Protein_3212 | DUF4942 domain-containing protein | - |
| B4376_RS17870 (3289544) | 3289544..3289741 | - | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| B4376_RS17875 (3289753) | 3289753..3290244 | - | 492 | WP_000976828.1 | DUF5983 family protein | - |
| B4376_RS17880 (3290241) | 3290241..3290615 | - | 375 | WP_000854917.1 | TA system toxin CbtA family protein | Toxin Detail |
| B4376_RS17885 (3290662) | 3290662..3291036 | - | 375 | WP_001280958.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| B4376_RS17895 (3291199) | 3291199..3291420 | - | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| B4376_RS17900 (3291483) | 3291483..3291959 | - | 477 | WP_005011624.1 | RadC family protein | - |
| B4376_RS27415 (3291975) | 3291975..3292448 | - | 474 | WP_005011597.1 | antirestriction protein | - |
| B4376_RS17910 (3292790) | 3292790..3293611 | - | 822 | WP_001234584.1 | DUF932 domain-containing protein | - |
| B4376_RS27425 (3293711) | 3293711..3293884 | - | 174 | WP_000088744.1 | DUF905 family protein | - |
| B4376_RS28445 (3294004) | 3294004..3294267 | - | 264 | WP_000466628.1 | DNA polymerase III subunit gamma/tau | - |
| B4376_RS17925 (3295206) | 3295206..3295622 | - | 417 | WP_000275180.1 | HTH-type transcriptional activator RhaR | VF |
| B4376_RS17930 (3295710) | 3295710..3296303 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| B4376_RS17935 (3296416) | 3296416..3297621 | - | 1206 | WP_001089068.1 | Multidrug resistance protein MdtG | ARG |
| B4376_RS17940 (3297703) | 3297703..3298326 | + | 624 | WP_000088605.1 | hypothetical protein | VF |
| B4376_RS17945 (3298304) | 3298304..3298426 | - | 123 | Protein_3228 | transcriptional regulator | - |
| B4376_RS17965 (3299419) | 3299419..3300078 | + | 660 | WP_000412211.1 | hypothetical protein | ARG |
| B4376_RS17970 (3300279) | 3300279..3300656 | - | 378 | WP_000656305.1 | GNAT family N-acetyltransferase | - |
| B4376_RS17975 (3300723) | 3300723..3303689 | - | 2967 | WP_001138064.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| B4376_RS17980 (3303692) | 3303692..3304252 | - | 561 | WP_000147567.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| B4376_RS27430 (3304378) | 3304378..3304728 | - | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| B4376_RS17990 (3304931) | 3304931..3305944 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| B4376_RS17995 (3306154) | 3306154..3306984 | + | 831 | WP_001334766.1 | hypothetical protein | ARG |
| B4376_RS18000 (3307097) | 3307097..3307935 | + | 839 | Protein_3237 | hypothetical protein | ARG |
| B4376_RS18010 (3308024) | 3308024..3308721 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| B4376_RS18015 (3308737) | 3308737..3309126 | + | 390 | Protein_3239 | transcriptional regulator | - |
| B4376_RS18020 (3309104) | 3309104..3309727 | - | 624 | WP_000088605.1 | hypothetical protein | VF |
| B4376_RS18025 (3309809) | 3309809..3311014 | + | 1206 | WP_001089068.1 | Multidrug resistance protein MdtG | ARG |
| B4376_RS18030 (3311127) | 3311127..3311720 | - | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| B4376_RS18035 (3311808) | 3311808..3312224 | + | 417 | WP_000275180.1 | HTH-type transcriptional activator RhaR | VF |
| B4376_RS18040 (3312283) | 3312283..3312980 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| B4376_RS18045 (3312997) | 3312997..3313485 | + | 489 | Protein_3245 | putative hexosyltransferase CapU | - |
| B4376_RS18050 (3313490) | 3313490..3314440 | + | 951 | WP_005086346.1 | virulence factor VirK | - |
| B4376_RS18055 (3314505) | 3314505..3315449 | + | 945 | WP_001411475.1 | Lipid A biosynthesis myristoyltransferase | VF |
| B4376_RS18060 (3315630) | 3315630..3316769 | + | 1140 | WP_000088357.1 | IS3 family transposase ISSd1 | Transposase |
| B4376_RS18065 (3316923) | 3316923..3318920 | + | 1998 | WP_001293435.1 | choline BCCT transporter BetT | - |
| B4376_RS18075 (3318983) | 3318983..3320260 | + | 1278 | WP_000625669.1 | DUF2254 domain-containing protein | - |
| B4376_RS18085 (3321769) | 3321769..3321987 | + | 219 | WP_000145481.1 | TetR/AcrR family transcriptional regulator | - |
| B4376_RS18090 (3322038) | 3322038..3322403 | - | 366 | Protein_3253 | IS21 family transposase IS100kyp | Transposase |
| B4376_RS18095 (3322506) | 3322506..3323245 | + | 740 | Protein_3254 | IS3 family transposase IS629 | Transposase |
| B4376_RS18110 (3323918) | 3323918..3325426 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| B4376_RS18115 (3325510) | 3325510..3325989 | + | 480 | Protein_3256 | IS3 family transposase IS629 | Transposase |
| B4376_RS18120 (3326029) | 3326029..3326370 | - | 342 | WP_000287886.1 | inovirus-type Gp2 protein | - |
| B4376_RS18125 (3326398) | 3326398..3326960 | - | 563 | Protein_3258 | inovirus Gp2 family protein | - |
| B4376_RS28450 (3327024) | 3327024..3327370 | - | 347 | Protein_3259 | DEAD/DEAH box helicase | - |
| B4376_RS18135 (3327477) | 3327477..3328040 | - | 564 | WP_000282110.1 | inovirus-type Gp2 protein | - |
| B4376_RS18140 (3329415) | 3329415..3331250 | - | 1836 | WP_001258873.1 | hypothetical protein | - |
| B4376_RS18145 (3331351) | 3331351..3331638 | + | 288 | WP_000070931.1 | AlpA family transcriptional regulator | - |
| B4376_RS18150 (3331610) | 3331610..3333139 | + | 1530 | WP_005067490.1 | DUF3987 domain-containing protein | - |
| B4376_RS18155 (3333309) | 3333309..3334526 | - | 1218 | WP_000279879.1 | hypothetical protein ; Integrase | Integrase |
| B4376_RS18160 (3334893) | 3334893..3335879 | - | 987 | WP_000611853.1 | protein YcdU | - |
| B4376_RS18165 (3335876) | 3335876..3336404 | - | 529 | Protein_3266 | ACP S-malonyltransferase | - |
| B4376_RS18170 (3336471) | 3336471..3337633 | + | 1163 | WP_085947598.1 | IS3-like element IS3 family transposase | - |
| B4376_RS18175 (3337743) | 3337743..3338531 | - | 789 | WP_005047400.1 | phosphate starvation-inducible protein PhoH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|