MGE detailed information
MGE type: Prophage MGE length: 71118 bp
Accession: NZ_CP020086 Location: 2905647..2976764 Organism: Shigella flexneri 1a strain 0670 Replicon: chromosome
Accession: NZ_CP020086 Location: 2905647..2976764 Organism: Shigella flexneri 1a strain 0670 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B4376_RS15610 () | 2902195..2903166 | + | 972 | WP_000150543.1 | PTS mannose transporter subunit IIAB | - |
| B4376_RS15615 () | 2903229..2904029 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| B4376_RS15620 () | 2904042..2904893 | + | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| B4376_RS15625 () | 2904948..2905424 | + | 477 | WP_000156246.1 | DUF986 family protein | - |
| B4376_RS15630 () | 2905453..2906150 | + | 698 | WP_227804321.1 | IS1 family transposase IS1X2 | Transposase |
| B4376_RS15640 () | 2906613..2907179 | + | 567 | WP_001668667.1 | manganese efflux pump MntP | - |
| B4376_RS15645 () | 2907176..2907985 | - | 810 | WP_000010128.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| B4376_RS15650 () | 2908151..2908360 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| B4376_RS15655 () | 2908373..2908516 | - | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| B4376_RS15665 () | 2909187..2909474 | - | 288 | WP_001006860.1 | YebO family protein | - |
| B4376_RS15670 () | 2909549..2909692 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| B4376_RS15675 () | 2909851..2910090 | + | 240 | WP_001211010.1 | YobH family protein | - |
| B4376_RS15680 () | 2910233..2911024 | - | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| B4376_RS15685 () | 2911201..2912574 | + | 1374 | WP_001127218.1 | MFS transporter | - |
| B4376_RS15690 () | 2912620..2913501 | - | 882 | WP_000984517.1 | protease HtpX | - |
| B4376_RS15695 () | 2913693..2915741 | - | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| B4376_RS15700 () | 2915761..2916459 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| B4376_RS15705 () | 2916556..2917053 | - | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| B4376_RS15710 () | 2917183..2918466 | + | 1284 | WP_001207280.1 | membrane integrity lipid transport subunit YebS | - |
| B4376_RS15715 () | 2918435..2921055 | + | 2621 | Protein_2816 | hypothetical protein | VF |
| B4376_RS15720 () | 2921135..2922574 | + | 1440 | Protein_2817 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| B4376_RS15730 () | 2922692..2922928 | + | 237 | WP_001295499.1 | YebV family protein | - |
| B4376_RS15735 () | 2923033..2923224 | + | 192 | WP_005049838.1 | YebW family protein | - |
| B4376_RS15740 () | 2923249..2923437 | - | 189 | Protein_2820 | serine/threonine-protein phosphatase | - |
| B4376_RS15750 () | 2924702..2925148 | - | 447 | Protein_2822 | metallophosphoesterase | - |
| B4376_RS15760 () | 2926667..2928382 | + | 1716 | WP_128568580.1 | hypothetical protein | VF |
| B4376_RS28405 () | 2928452..2928556 | - | 105 | Protein_2825 | tail fiber assembly protein | - |
| B4376_RS15770 () | 2928562..2929185 | - | 624 | WP_000930142.1 | DUF4376 domain-containing protein | - |
| B4376_RS27910 () | 2929136..2929303 | - | 168 | Protein_2827 | IS66 family transposase ISSfl3 | Transposase |
| B4376_RS27915 () | 2929305..2929685 | - | 381 | Protein_2828 | IS66 family transposase ISSfl3 | Transposase |
| B4376_RS15795 () | 2930909..2931797 | + | 889 | Protein_2829 | Rha family transcriptional regulator | - |
| B4376_RS15800 () | 2931794..2933067 | + | 1274 | WP_094081546.1 | IS3 family transposase IS2 | Transposase |
| B4376_RS15805 () | 2933144..2933365 | + | 222 | WP_000560210.1 | cell division protein FtsZ | - |
| B4376_RS15810 () | 2933365..2933535 | + | 171 | WP_001359121.1 | YdaE family protein | - |
| B4376_RS15815 () | 2933610..2933885 | + | 276 | WP_005049830.1 | hypothetical protein | - |
| B4376_RS15820 () | 2933985..2935400 | + | 1416 | Protein_2834 | exodeoxyribonuclease VIII | - |
| B4376_RS15825 () | 2935457..2936613 | - | 1157 | Protein_2835 | IS3 family transposase IS600 | Transposase |
| B4376_RS15830 () | 2936712..2936972 | + | 261 | WP_005135630.1 | host-nuclease inhibitor Gam family protein | - |
| B4376_RS15835 () | 2936978..2938075 | + | 1098 | WP_001173294.1 | AAA family ATPase | - |
| B4376_RS15840 () | 2938150..2938885 | + | 736 | Protein_2838 | IS3 family transposase | - |
| B4376_RS15855 () | 2939558..2941066 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| B4376_RS15860 () | 2941150..2941629 | + | 480 | Protein_2840 | IS3 family transposase IS629 | Transposase |
| B4376_RS15865 () | 2941677..2941844 | + | 168 | WP_005049823.1 | excisionase family protein | - |
| B4376_RS15870 () | 2941846..2942016 | + | 171 | Protein_2842 | DUF3596 domain-containing protein | - |
| B4376_RS15880 () | 2942784..2943425 | + | 642 | Protein_2844 | hypothetical protein ; Integrase | Integrase |
| B4376_RS15885 () | 2943857..2944771 | + | 915 | WP_000555620.1 | hypothetical protein | VF |
| B4376_RS15890 () | 2944771..2945598 | + | 828 | WP_000983722.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| B4376_RS15895 () | 2945595..2946452 | + | 858 | WP_001101728.1 | hypothetical protein | ARG |
| B4376_RS15900 () | 2946449..2947306 | + | 858 | WP_000968134.1 | hypothetical protein | ARG |
| B4376_RS15905 () | 2947507..2948130 | - | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| B4376_RS15910 () | 2948081..2949349 | - | 1269 | WP_005098694.1 | prophage tail fiber N-terminal domain-containing protein | - |
| B4376_RS15915 () | 2949373..2949917 | - | 545 | Protein_2851 | tail fiber assembly protein | - |
| B4376_RS15925 () | 2949941..2950309 | - | 369 | WP_011069357.1 | hypothetical protein | - |
| B4376_RS15930 () | 2950337..2951242 | - | 906 | Protein_2853 | IS3 family transposase IS600 | Transposase |
| B4376_RS15940 () | 2952014..2952166 | - | 153 | Protein_2855 | Rha family transcriptional regulator | - |
| B4376_RS15955 () | 2954534..2955916 | - | 1383 | Protein_2857 | Tyrosine recombinase XerD ; Integrase | Integrase |
| B4376_RS15960 () | 2956412..2958016 | - | 1605 | WP_000615491.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| B4376_RS15985 () | 2958650..2959132 | - | 483 | WP_000068107.1 | ORF6N domain-containing protein | - |
| B4376_RS15990 () | 2959203..2960342 | - | 1140 | WP_000088354.1 | IS3 family transposase ISSd1 | Transposase |
| B4376_RS15995 () | 2960404..2960577 | - | 174 | WP_000504450.1 | hypothetical protein | - |
| B4376_RS16000 () | 2960730..2961284 | - | 555 | WP_000640143.1 | DUF1133 family protein | - |
| B4376_RS16005 () | 2961281..2961571 | - | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| B4376_RS16010 () | 2961571..2962170 | - | 600 | WP_000940329.1 | DUF1367 family protein | - |
| B4376_RS16020 () | 2962304..2963001 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| B4376_RS16030 () | 2963507..2963662 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 2963674..2963732 | + | 59 | - | - | Antitoxin Detail |
| B4376_RS16040 () | 2964117..2964482 | - | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| B4376_RS16045 () | 2964482..2965147 | - | 666 | WP_000208062.1 | hypothetical protein | - |
| B4376_RS16050 () | 2965144..2965509 | - | 366 | WP_001229297.1 | HNH endonuclease signature motif containing protein | - |
| B4376_RS16055 () | 2965511..2965729 | - | 219 | WP_000256998.1 | DUF4014 family protein | - |
| B4376_RS16060 () | 2965822..2966178 | - | 357 | WP_005048249.1 | hypothetical protein | - |
| B4376_RS16065 () | 2966236..2966658 | - | 423 | WP_001118167.1 | DUF977 family protein | - |
| B4376_RS16070 () | 2966673..2967419 | - | 747 | WP_000788996.1 | ATP-binding protein | - |
| B4376_RS28410 () | 2967565..2967734 | - | 170 | Protein_2874 | hypothetical protein | - |
| B4376_RS16080 () | 2968258..2969486 | + | 1229 | WP_167547301.1 | IS3 family transposase IS2 | Transposase |
| B4376_RS16085 () | 2969500..2969910 | - | 411 | Protein_2876 | YdaU family protein | - |
| B4376_RS16090 () | 2970014..2971170 | + | 1157 | WP_094081493.1 | IS3 family transposase IS600 | Transposase |
| B4376_RS16095 () | 2971215..2971649 | - | 435 | Protein_2878 | HTH-type transcriptional regulator ArgP | VF |
| B4376_RS16100 () | 2971787..2972707 | + | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| B4376_RS16105 () | 2972707..2973066 | + | 360 | Protein_2880 | alpha/beta hydrolase | - |
| B4376_RS16110 () | 2973083..2974279 | - | 1197 | WP_005084161.1 | IS110 family transposase ISEc20 | Transposase |
| B4376_RS16115 () | 2974508..2975089 | + | 582 | Protein_2882 | alpha/beta hydrolase | - |
| B4376_RS16120 () | 2975107..2975745 | + | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| B4376_RS16125 () | 2976036..2976764 | + | 729 | WP_005049761.1 | murein tripeptide amidase MpaA | - |
| B4376_RS16130 () | 2976739..2977704 | - | 966 | WP_005049759.1 | L-Ala-D/L-Glu epimerase | - |
| B4376_RS16135 () | 2977823..2978329 | + | 507 | WP_000084387.1 | thiol peroxidase | - |
| B4376_RS16140 () | 2978373..2979914 | - | 1542 | WP_001306544.1 | transcriptional regulator TyrR | - |
| B4376_RS16145 () | 2980062..2981123 | - | 1062 | WP_000138745.1 | YcjF family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|