MGE detailed information
MGE type: Genomic_island MGE length: 57340 bp
Accession: NZ_CP020086 Location: 2407557..2464896 Organism: Shigella flexneri 1a strain 0670 Replicon: chromosome
Accession: NZ_CP020086 Location: 2407557..2464896 Organism: Shigella flexneri 1a strain 0670 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B4376_RS12640 () | 2402700..2403620 | + | 921 | WP_001212270.1 | drug/metabolite exporter YedA | - |
| B4376_RS12645 () | 2403609..2404079 | - | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| B4376_RS12650 () | 2404060..2405478 | - | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| B4376_RS12655 () | 2405545..2406046 | - | 502 | Protein_2279 | HD domain-containing protein | - |
| B4376_RS12660 () | 2406125..2406382 | - | 258 | WP_032155863.1 | cell division protein DrpB | - |
| B4376_RS12670 () | 2407647..2408357 | + | 711 | Protein_2282 | porin | - |
| B4376_RS12680 () | 2409700..2409870 | + | 171 | Protein_2284 | porin | - |
| B4376_RS12695 () | 2410498..2411195 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| B4376_RS12700 () | 2411241..2412092 | + | 852 | WP_000218218.1 | protein deglycase HchA | - |
| B4376_RS12705 () | 2412200..2413558 | - | 1359 | WP_000826714.1 | two-component system sensor histidine kinase HprS | - |
| B4376_RS12710 () | 2413558..2414229 | - | 672 | WP_001347103.1 | Sensor histidine kinase RcsC | VF |
| B4376_RS12715 () | 2414362..2414775 | + | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| B4376_RS12720 () | 2414884..2415888 | + | 1005 | Protein_2290 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| B4376_RS12725 () | 2415889..2416524 | + | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| B4376_RS12730 () | 2416782..2417432 | + | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| B4376_RS12745 () | 2418510..2418779 | - | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| B4376_RS12750 () | 2418836..2419504 | + | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| B4376_RS12755 () | 2419820..2421463 | + | 1644 | WP_014532281.1 | hypothetical protein | VF |
| B4376_RS12765 () | 2421643..2422122 | - | 480 | Protein_2296 | DUF4376 domain-containing protein | - |
| B4376_RS12770 () | 2422163..2423020 | - | 858 | Protein_2297 | IS3 family transposase IS600 | Transposase |
| B4376_RS12775 () | 2423078..2423775 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| B4376_RS12780 () | 2423868..2424350 | - | 483 | WP_000594909.1 | hypothetical protein | - |
| B4376_RS12785 () | 2424418..2426367 | - | 1950 | WP_000785377.1 | phage tail tape measure protein | - |
| B4376_RS12790 () | 2426452..2426787 | - | 336 | WP_001251340.1 | phage tail assembly protein | - |
| B4376_RS12795 () | 2426787..2427143 | - | 357 | WP_001062338.1 | phage tail tube protein | - |
| B4376_RS12800 () | 2427143..2428639 | - | 1497 | WP_000155743.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| B4376_RS12805 () | 2428636..2428797 | - | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| B4376_RS12810 () | 2428807..2429166 | - | 360 | Protein_2305 | hypothetical protein | - |
| B4376_RS12820 () | 2430413..2430736 | - | 324 | Protein_2307 | IS66 family transposase ISSfl3 | Transposase |
| B4376_RS12830 () | 2431505..2432002 | - | 498 | Protein_2309 | IS66 family transposase ISSfl3 | Transposase |
| B4376_RS12835 () | 2431999..2432349 | - | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| B4376_RS12840 () | 2432346..2433020 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| B4376_RS12845 () | 2433119..2433334 | - | 216 | WP_000839572.1 | class II holin family protein | - |
| B4376_RS12875 () | 2434130..2434818 | - | 689 | Protein_2313 | bacteriophage antitermination protein Q | - |
| B4376_RS12880 () | 2434815..2435180 | - | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| B4376_RS12885 () | 2435181..2436239 | - | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| B4376_RS12890 () | 2436241..2436519 | - | 279 | WP_011069426.1 | hypothetical protein | - |
| B4376_RS12900 () | 2436687..2436842 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 2436854..2436912 | + | 59 | - | - | Antitoxin Detail |
| B4376_RS12915 () | 2437494..2437910 | - | 417 | WP_005069274.1 | hypothetical protein | - |
| B4376_RS12920 () | 2437937..2438077 | + | 141 | Protein_2319 | DUF4224 domain-containing protein | - |
| B4376_RS12925 () | 2438077..2439127 | + | 1051 | Protein_2320 | Putative transport protein YhhT ; Integrase | Integrase |
| B4376_RS12935 () | 2439338..2440135 | + | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| B4376_RS12945 () | 2440473..2441735 | + | 1263 | Protein_2322 | hypothetical protein ; Integrase | Integrase |
| B4376_RS12950 () | 2441842..2442319 | - | 478 | Protein_2323 | DDE-type integrase/transposase/recombinase | - |
| B4376_RS12955 () | 2442400..2443908 | - | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| B4376_RS12970 () | 2444581..2445269 | - | 689 | Protein_2325 | IS3-like element IS911 family transposase | - |
| B4376_RS12975 () | 2445325..2445831 | + | 507 | Protein_2326 | MFS transporter | - |
| B4376_RS12990 () | 2447149..2448348 | + | 1200 | Protein_2328 | IS3 family transposase IS600 | Transposase |
| B4376_RS12995 () | 2448349..2448555 | + | 207 | WP_000466572.1 | hypothetical protein | - |
| B4376_RS13000 () | 2448657..2450111 | + | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| B4376_RS13005 () | 2450454..2451170 | + | 717 | WP_000532920.1 | transcriptional regulatory protein YeeN | VF |
| B4376_RS27265 () | 2451802..2453429 | - | 1628 | Protein_2332 | toxic metabolite efflux MATE transporter YeeO | - |
| B4376_RS13035 () | 2453547..2454497 | - | 951 | WP_001010988.1 | HTH-type transcriptional regulator Cbl | - |
| B4376_RS13040 () | 2454599..2455516 | - | 918 | WP_001011445.1 | nitrogen assimilation transcriptional regulator NAC | - |
| B4376_RS13050 () | 2455975..2456910 | - | 936 | WP_000986341.1 | L,D-transpeptidase | - |
| B4376_RS13055 () | 2456972..2458051 | - | 1080 | WP_001165576.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| B4376_RS13060 () | 2458063..2458806 | - | 744 | WP_005049317.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| B4376_RS13065 () | 2458803..2459312 | - | 510 | WP_000261572.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| B4376_RS13075 () | 2460723..2461458 | + | 736 | Protein_2340 | IS3 family transposase | - |
| B4376_RS13090 () | 2462131..2463639 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| B4376_RS13095 () | 2463723..2464188 | + | 466 | Protein_2342 | IS3 family transposase IS629 | Transposase |
| B4376_RS27280 () | 2464222..2464290 | + | 69 | Protein_2343 | flagellar protein FlhE | - |
| B4376_RS13100 () | 2464408..2464896 | - | 489 | WP_005063152.1 | lysozyme inhibitor LprI family protein | - |
| B4376_RS28345 () | 2464987..2465031 | + | 45 | WP_212734366.1 | hypothetical protein | - |
| B4376_RS13105 () | 2465073..2466806 | - | 1734 | WP_001025297.1 | arginine--tRNA ligase | - |
| B4376_RS13115 () | 2467022..2467588 | + | 567 | WP_005048653.1 | VOC family protein | - |
| B4376_RS13120 () | 2467602..2468348 | + | 747 | WP_001185741.1 | copper homeostasis protein CutC | - |
| B4376_RS13125 () | 2468736..2469836 | + | 1101 | WP_001214308.1 | NapC/NirT family cytochrome c | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|