MGE detailed information
MGE type: Genomic_island MGE length: 22628 bp
Accession: NZ_CP019967 Location: 4236030..4258657 Organism: Rhodopseudomonas palustris strain YSC3 Replicon: chromosome
Accession: NZ_CP019967 Location: 4236030..4258657 Organism: Rhodopseudomonas palustris strain YSC3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RPYSC3_RS19555 () | 4231094..4232200 | + | 1107 | WP_107345544.1 | branched-chain amino acid ABC transporter substrate-binding protein | - |
| RPYSC3_RS19560 () | 4232429..4233163 | - | 735 | WP_107356555.1 | cytochrome C biogenesis protein | - |
| RPYSC3_RS19565 () | 4233310..4234308 | + | 999 | WP_107357584.1 | P1 family peptidase | - |
| RPYSC3_RS19570 () | 4234298..4235065 | - | 768 | WP_107356556.1 | EF-hand domain-containing protein | - |
| RPYSC3_RS19575 () | 4235335..4236033 | + | 699 | WP_107356557.1 | ribulose-phosphate 3-epimerase | - |
| RPYSC3_RS19580 () | 4236030..4236668 | - | 639 | WP_107356558.1 | hypothetical protein | - |
| RPYSC3_RS19590 () | 4237313..4238620 | + | 1308 | WP_107356559.1 | adenylosuccinate lyase | - |
| RPYSC3_RS19595 () | 4238863..4239564 | - | 702 | WP_107356560.1 | phosphoribosylformylglycinamidine synthase subunit PurQ | - |
| RPYSC3_RS19600 () | 4239622..4239861 | - | 240 | WP_107356561.1 | hypothetical protein | - |
| RPYSC3_RS19605 () | 4239885..4240130 | - | 246 | WP_011159358.1 | phosphoribosylformylglycinamidine synthase subunit PurS | - |
| RPYSC3_RS19610 () | 4240320..4241087 | - | 768 | WP_199851757.1 | phosphoribosylaminoimidazolesuccinocarboxamide synthase | - |
| RPYSC3_RS19615 () | 4241385..4241708 | + | 324 | WP_107345553.1 | DUF1476 domain-containing protein | - |
| RPYSC3_RS19620 () | 4242381..4243199 | - | 819 | WP_107356562.1 | isocitrate lyase/phosphoenolpyruvate mutase family protein | - |
| RPYSC3_RS19625 () | 4243654..4243893 | + | 240 | WP_107356563.1 | hypothetical protein | - |
| RPYSC3_RS19630 () | 4243890..4244615 | + | 726 | WP_107356564.1 | Fic family protein | - |
| RPYSC3_RS19635 () | 4244669..4245154 | - | 486 | WP_107357586.1 | transcription elongation factor GreA | - |
| RPYSC3_RS19640 () | 4245215..4245718 | - | 504 | WP_107357587.1 | mismatch-specific DNA-glycosylase | - |
| RPYSC3_RS19645 () | 4245752..4246153 | - | 402 | WP_107356565.1 | DUF2147 domain-containing protein | - |
| RPYSC3_RS19650 () | 4246269..4246670 | - | 402 | WP_107356566.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| RPYSC3_RS19655 () | 4246667..4246903 | - | 237 | WP_107356567.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| RPYSC3_RS19660 () | 4246966..4248162 | - | 1197 | WP_107356568.1 | TrmJ/YjtD family RNA methyltransferase | - |
| RPYSC3_RS19665 () | 4248553..4249776 | + | 1224 | WP_107345565.1 | NADP-dependent isocitrate dehydrogenase | - |
| RPYSC3_RS19670 () | 4249857..4251770 | - | 1914 | WP_107356569.1 | caspase family protein | - |
| RPYSC3_RS19680 () | 4252286..4252618 | + | 333 | WP_107345566.1 | YnfA family protein | - |
| RPYSC3_RS19685 () | 4252770..4253609 | + | 840 | WP_107357588.1 | Regulatory protein PchR | VF |
| RPYSC3_RS19690 () | 4253750..4256059 | + | 2310 | WP_107356571.1 | TonB-dependent siderophore receptor | - |
| RPYSC3_RS19695 () | 4256078..4256608 | + | 531 | WP_107356572.1 | hypothetical protein | - |
| RPYSC3_RS19700 () | 4256608..4257615 | + | 1008 | Protein_3875 | PepSY domain-containing protein | - |
| RPYSC3_RS19705 () | 4257709..4258657 | + | 949 | WP_107353808.1 | IS630 family transposase ISRel6 | Transposase |
| RPYSC3_RS19710 () | 4258790..4260541 | - | 1752 | WP_199851758.1 | Kef family K(+) transporter | - |
| RPYSC3_RS19715 () | 4260708..4262486 | + | 1779 | WP_107356573.1 | cation:proton antiporter | - |
| RPYSC3_RS19720 () | 4262647..4263402 | - | 756 | WP_107356574.1 | GNAT family N-acetyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|