MGE detailed information
MGE type: Genomic_island MGE length: 73243 bp
Accession: NZ_CP019944 Location: 4801852..4875094 Organism: Escherichia coli strain DSM 103246 Replicon: chromosome
Accession: NZ_CP019944 Location: 4801852..4875094 Organism: Escherichia coli strain DSM 103246 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Eco28_RS24525 () | 4797223..4798407 | + | 1185 | WP_072647611.1 | tyrosine-type recombinase/integrase | - |
| Eco28_RS24530 () | 4798557..4799567 | + | 1011 | WP_000053331.1 | substrate-binding domain-containing protein | - |
| Eco28_RS24535 () | 4799663..4801789 | + | 2127 | WP_000253907.1 | alpha-galactosidase | - |
| Eco28_RS24540 () | 4801852..4803129 | + | 1278 | WP_001083368.1 | MFS transporter | - |
| Eco28_RS24545 () | 4803126..4804559 | + | 1434 | WP_024144973.1 | glycoside hydrolase family 32 protein | - |
| Eco28_RS24550 () | 4804754..4806148 | + | 1395 | WP_001037798.1 | carbohydrate porin | - |
| Eco28_RS24560 () | 4806664..4807361 | - | 698 | Protein_4544 | IS1 family transposase | - |
| Eco28_RS24570 () | 4807412..4809199 | - | 1788 | WP_080030374.1 | hypothetical protein | - |
| Eco28_RS24575 () | 4809431..4809980 | + | 550 | Protein_4546 | transposase | - |
| Eco28_RS24580 () | 4810012..4810313 | + | 302 | Protein_4547 | IS3 family transposase ISEc31 | Transposase |
| Eco28_RS28305 () | 4810521..4810769 | + | 249 | Protein_4548 | IS3 family transposase IS2 | Transposase |
| Eco28_RS24590 () | 4810746..4811383 | - | 638 | Protein_4549 | IS3 family transposase IS2 | Transposase |
| Eco28_RS28520 () | 4812265..4812852 | + | 588 | WP_157903028.1 | Adhesin YadA | VF |
| Eco28_RS24600 () | 4813282..4814298 | - | 1017 | Protein_4551 | IS110 family transposase | - |
| Eco28_RS28310 () | 4814365..4814534 | + | 170 | Protein_4552 | IS3 family transposase | - |
| Eco28_RS24605 () | 4814572..4815785 | + | 1214 | WP_089613743.1 | IS3 family transposase ISEc31 | Transposase |
| Eco28_RS24610 () | 4815963..4816586 | - | 624 | WP_001364382.1 | hypothetical protein | - |
| Eco28_RS28525 () | 4816720..4816890 | - | 171 | WP_001216315.1 | hypothetical protein | - |
| Eco28_RS24615 () | 4816896..4817309 | - | 414 | WP_063073982.1 | hypothetical protein | - |
| Eco28_RS24620 () | 4817306..4817689 | - | 384 | WP_000270991.1 | hypothetical protein | - |
| Eco28_RS24625 () | 4817949..4818518 | - | 570 | WP_000148635.1 | inovirus Gp2 family protein | - |
| Eco28_RS24635 () | 4819264..4819476 | - | 213 | WP_000453333.1 | hemolysin expression modulator Hha | - |
| Eco28_RS24645 () | 4820179..4820385 | + | 207 | WP_001025263.1 | AlpA family transcriptional regulator | - |
| Eco28_RS24650 () | 4820471..4821043 | + | 573 | WP_001170556.1 | hypothetical protein | - |
| Eco28_RS24655 () | 4821158..4822663 | - | 1506 | WP_001486476.1 | DUF3987 domain-containing protein | - |
| Eco28_RS24660 () | 4823844..4824716 | + | 873 | WP_072647789.1 | GTPase family protein | - |
| Eco28_RS24665 () | 4825089..4827935 | + | 2847 | WP_080030376.1 | Ag43/Cah family autotransporter adhesin | - |
| Eco28_RS24675 () | 4828263..4829081 | + | 819 | WP_072647787.1 | DUF945 domain-containing protein | - |
| Eco28_RS24680 () | 4829173..4829658 | + | 486 | WP_072647786.1 | antirestriction protein | - |
| Eco28_RS24685 () | 4829674..4830150 | + | 477 | WP_001186747.1 | RadC family protein | - |
| Eco28_RS24690 () | 4830213..4830434 | + | 222 | WP_001405861.1 | DUF987 domain-containing protein | - |
| Eco28_RS24700 () | 4830597..4830965 | + | 369 | WP_001406130.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| Eco28_RS24705 () | 4831055..4831432 | + | 378 | WP_000854721.1 | TA system toxin CbtA family protein | Toxin Detail |
| Eco28_RS24710 () | 4831429..4831917 | + | 489 | WP_072647689.1 | hypothetical protein | - |
| Eco28_RS24715 () | 4831929..4832126 | + | 198 | WP_000839239.1 | DUF957 domain-containing protein | - |
| Eco28_RS24720 () | 4832211..4833077 | + | 867 | WP_072647690.1 | DUF4942 domain-containing protein | - |
| Eco28_RS24725 () | 4833149..4833412 | + | 264 | WP_001143297.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| Eco28_RS24730 () | 4833409..4833735 | + | 327 | WP_000779483.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| Eco28_RS24735 () | 4834199..4835461 | + | 1263 | WP_001218820.1 | Prophage integrase IntS ; Integrase | Integrase |
| Eco28_RS24745 () | 4835913..4839428 | + | 3516 | WP_000344091.1 | ATP-binding protein | - |
| Eco28_RS24750 () | 4839537..4841036 | - | 1500 | WP_001026222.1 | phosphoethanolamine transferase | - |
| Eco28_RS24755 () | 4841211..4841957 | - | 747 | WP_001350744.1 | porin family protein | - |
| Eco28_RS24765 () | 4842317..4843327 | - | 1011 | WP_000758687.1 | Fimbrial adhesin PapG | VF |
| Eco28_RS24770 () | 4843371..4843871 | - | 501 | WP_000620429.1 | Minor fimbrial protein PrsF | VF |
| Eco28_RS24775 () | 4843946..4844467 | - | 522 | WP_000723802.1 | Fimbrial protein PapE | VF |
| Eco28_RS24780 () | 4844494..4845030 | - | 537 | WP_000597712.1 | Fimbrial adapter PapK | VF |
| Eco28_RS24785 () | 4845040..4845621 | - | 582 | WP_000261303.1 | hypothetical protein | VF |
| Eco28_RS24790 () | 4845658..4846392 | - | 735 | WP_000265730.1 | Chaperone protein PapD | VF |
| Eco28_RS24795 () | 4846523..4847200 | + | 678 | WP_001682408.1 | IS66 family transposase ISCro1 | Transposase |
| Eco28_RS24800 () | 4847200..4847547 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| Eco28_RS24805 () | 4847567..4849138 | + | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| Eco28_RS24810 () | 4849170..4851680 | - | 2511 | WP_000654934.1 | hypothetical protein | VF |
| Eco28_RS24815 () | 4851739..4852325 | - | 587 | Protein_4590 | type 1 fimbrial protein | - |
| Eco28_RS24820 () | 4852388..4852660 | - | 273 | Protein_4591 | fimbrial protein | - |
| Eco28_RS24825 () | 4852898..4853701 | + | 804 | WP_001082319.1 | hypothetical protein | ARG |
| Eco28_RS24830 () | 4853701..4854537 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| Eco28_RS24840 () | 4854755..4855570 | + | 816 | WP_000018322.1 | hypothetical protein | ARG |
| Eco28_RS24845 () | 4855728..4858613 | - | 2886 | WP_080030377.1 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| Eco28_RS24850 () | 4858739..4859362 | + | 624 | WP_000904897.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| Eco28_RS24855 () | 4859393..4860522 | + | 1130 | WP_085967404.1 | IS3 family transposase IS1133 | Transposase |
| Eco28_RS24865 () | 4860592..4861800 | + | 1209 | WP_001352368.1 | IS4 family transposase IS10R | Transposase |
| Eco28_RS24870 () | 4861816..4861935 | - | 120 | Protein_4599 | LysR family transcriptional regulator | - |
| Eco28_RS24875 () | 4862166..4863371 | - | 1206 | WP_000599533.1 | sodium/glutamate symporter | - |
| Eco28_RS24880 () | 4863815..4864135 | + | 321 | WP_000562370.1 | antibiotic biosynthesis monooxygenase | - |
| Eco28_RS24885 () | 4864128..4864514 | + | 387 | WP_000460651.1 | hypothetical protein | - |
| Eco28_RS24890 () | 4864522..4865208 | + | 687 | WP_001284954.1 | winged helix-turn-helix domain-containing protein | - |
| Eco28_RS24895 () | 4865186..4865809 | - | 624 | WP_058652084.1 | hypothetical protein | VF |
| Eco28_RS24900 () | 4865891..4867096 | + | 1206 | WP_001089068.1 | Multidrug resistance protein MdtG | ARG |
| Eco28_RS24905 () | 4867209..4867802 | - | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| Eco28_RS24910 () | 4867935..4868306 | + | 372 | WP_035689358.1 | HTH-type transcriptional activator RhaR | VF |
| Eco28_RS24915 () | 4868316..4869524 | - | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| Eco28_RS28320 () | 4869633..4869830 | - | 198 | Protein_4609 | IS4 family transposase IS10R | Transposase |
| Eco28_RS24920 () | 4869950..4870213 | - | 264 | Protein_4610 | hypothetical protein | VF |
| Eco28_RS24925 () | 4870420..4870734 | - | 315 | WP_000930062.1 | hypothetical protein | VF |
| Eco28_RS28325 () | 4871166..4871444 | + | 279 | WP_001349530.1 | hypothetical protein | VF |
| Eco28_RS24940 () | 4871378..4872034 | + | 657 | Protein_4613 | IS91-like element ISVsa3 family transposase | - |
| Eco28_RS24950 () | 4872210..4872512 | - | 303 | WP_000251875.1 | phosphoglucosamine mutase | - |
| Eco28_RS24955 () | 4872599..4873414 | - | 816 | WP_001043260.1 | hypothetical protein | ARG |
| Eco28_RS24965 () | 4873886..4875094 | - | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| Eco28_RS24970 () | 4875203..4875796 | - | 594 | Protein_4617 | transcriptional regulator MelR | - |
| Eco28_RS24975 () | 4876079..4877434 | + | 1356 | WP_000986600.1 | alpha-galactosidase | - |
| Eco28_RS24980 () | 4877537..4878958 | + | 1422 | WP_032151411.1 | melibiose:sodium transporter MelB | - |
| Eco28_RS24985 () | 4879097..4879726 | - | 630 | WP_000198733.1 | DUF2238 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|