MGE detailed information
MGE type: Prophage MGE length: 41841 bp
Accession: NZ_CP019944 Location: 4668166..4710006 Organism: Escherichia coli strain DSM 103246 Replicon: chromosome
Accession: NZ_CP019944 Location: 4668166..4710006 Organism: Escherichia coli strain DSM 103246 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Eco28_RS23735 () | 4663433..4664785 | - | 1353 | WP_001162171.1 | metalloprotease PmbA | - |
| Eco28_RS23740 () | 4664879..4665430 | + | 552 | WP_000166270.1 | ribosome-associated protein | - |
| Eco28_RS23745 () | 4665586..4666959 | - | 1374 | WP_001219792.1 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | - |
| Eco28_RS23750 () | 4667135..4668133 | + | 999 | WP_000853753.1 | class 1 fructose-bisphosphatase | - |
| Eco28_RS23755 () | 4668166..4669161 | - | 996 | WP_000596014.1 | sugar ABC transporter permease YjfF | - |
| Eco28_RS23760 () | 4669148..4670170 | - | 1023 | WP_001362056.1 | ABC transporter permease | - |
| Eco28_RS23765 () | 4670184..4671686 | - | 1503 | WP_000205813.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| Eco28_RS23770 () | 4671826..4672782 | - | 957 | WP_000265942.1 | galactofuranose ABC transporter substrate-binding protein YtfQ | - |
| Eco28_RS23775 () | 4673092..4673622 | + | 531 | WP_000055072.1 | inorganic diphosphatase | - |
| Eco28_RS23780 () | 4673702..4674052 | - | 351 | WP_000239579.1 | endoribonuclease toxin ChpB | Toxin Detail |
| Eco28_RS23785 () | 4674046..4674297 | - | 252 | WP_001223208.1 | type II toxin-antitoxin system antitoxin ChpS | Antitoxin Detail |
| Eco28_RS23790 () | 4674588..4675583 | - | 996 | WP_001372721.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| Eco28_RS23795 () | 4675650..4675949 | - | 300 | WP_021580386.1 | helix-turn-helix transcriptional regulator | - |
| Eco28_RS23800 () | 4676058..4676483 | + | 426 | WP_001158283.1 | regulatory protein | - |
| Eco28_RS23805 () | 4676521..4676871 | + | 351 | WP_000664580.1 | DUF4761 family protein | - |
| Eco28_RS23810 () | 4676882..4677160 | + | 279 | WP_000159895.1 | hypothetical protein | - |
| Eco28_RS23815 () | 4677172..4677414 | + | 243 | WP_000514277.1 | DUF4754 family protein | - |
| Eco28_RS28295 () | 4677411..4677524 | + | 114 | WP_000021656.1 | hypothetical protein | - |
| Eco28_RS23820 () | 4677611..4677814 | + | 204 | WP_001560998.1 | hypothetical protein | - |
| Eco28_RS23825 () | 4677811..4678056 | + | 246 | WP_000153676.1 | winged helix-turn-helix domain-containing protein | - |
| Eco28_RS23830 () | 4678053..4678367 | + | 315 | WP_046788693.1 | ead/Ea22-like family protein | - |
| Eco28_RS23835 () | 4678364..4678567 | + | 204 | WP_001036809.1 | hypothetical protein | - |
| Eco28_RS23840 () | 4678564..4679394 | + | 831 | WP_001603062.1 | serine protease | - |
| Eco28_RS28510 () | 4679448..4680068 | + | 621 | WP_157895439.1 | ash family protein | - |
| Eco28_RS23850 () | 4680065..4680430 | + | 366 | WP_000599398.1 | hypothetical protein | - |
| Eco28_RS23855 () | 4680437..4683259 | + | 2823 | WP_155120837.1 | replication endonuclease | - |
| Eco28_RS23860 () | 4683336..4684295 | + | 960 | WP_000686508.1 | plasmid segregation protein ParM | - |
| Eco28_RS23865 () | 4684300..4684611 | + | 312 | WP_080030361.1 | plasmid partitioning/stability family protein | - |
| Eco28_RS23870 () | 4684793..4685938 | + | 1146 | WP_001603071.1 | XRE family transcriptional regulator | - |
| Eco28_RS23875 () | 4685928..4686446 | + | 519 | WP_001603073.1 | PIN domain-containing protein | - |
| Eco28_RS23880 () | 4686980..4688026 | - | 1047 | WP_000087812.1 | phage portal protein | - |
| Eco28_RS23885 () | 4688026..4689777 | - | 1752 | WP_000613796.1 | terminase family protein | - |
| Eco28_RS23890 () | 4689932..4690768 | + | 837 | WP_080030362.1 | GPO family capsid scaffolding protein | - |
| Eco28_RS23895 () | 4690792..4691844 | + | 1053 | WP_080030363.1 | phage major capsid protein, P2 family | - |
| Eco28_RS23900 () | 4691890..4692690 | + | 801 | WP_032198072.1 | terminase | - |
| Eco28_RS23905 () | 4692792..4693286 | + | 495 | WP_000063103.1 | head completion/stabilization protein | - |
| Eco28_RS23910 () | 4693286..4693486 | + | 201 | WP_000864901.1 | tail protein X | - |
| Eco28_RS23915 () | 4693489..4693812 | + | 324 | WP_000104350.1 | phage holin family protein | - |
| Eco28_RS23920 () | 4693809..4694201 | + | 393 | WP_000072327.1 | M15 family metallopeptidase | - |
| Eco28_RS23925 () | 4694198..4694605 | + | 408 | WP_052909143.1 | DUF2570 domain-containing protein | - |
| Eco28_RS23935 () | 4694743..4695210 | + | 468 | WP_044860451.1 | phage tail protein | - |
| Eco28_RS23940 () | 4695203..4695838 | + | 636 | WP_000356344.1 | phage virion morphogenesis protein | - |
| Eco28_RS23945 () | 4695850..4696416 | + | 567 | WP_077881905.1 | phage baseplate assembly protein V | - |
| Eco28_RS23950 () | 4696434..4696763 | + | 330 | WP_001067548.1 | GPW/gp25 family protein | - |
| Eco28_RS23955 () | 4696767..4697663 | + | 897 | WP_001111949.1 | baseplate J/gp47 family protein | - |
| Eco28_RS23960 () | 4697656..4698264 | + | 609 | WP_000071724.1 | phage tail protein I | - |
| Eco28_RS23965 () | 4698261..4699751 | + | 1491 | WP_078398835.1 | phage tail protein | - |
| Eco28_RS23970 () | 4699754..4700194 | + | 441 | WP_080030364.1 | tail fiber assembly protein | - |
| Eco28_RS23975 () | 4700166..4700768 | - | 603 | WP_023351548.1 | tail fiber assembly protein | - |
| Eco28_RS23980 () | 4700768..4701274 | - | 507 | WP_167813248.1 | phage tail protein | - |
| Eco28_RS23985 () | 4701302..4701901 | + | 600 | WP_022631004.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| Eco28_RS23990 () | 4701928..4702416 | - | 489 | WP_000979945.1 | phage tail protein | - |
| Eco28_RS23995 () | 4702429..4705236 | - | 2808 | WP_063809642.1 | phage tail tape measure protein | - |
| Eco28_RS24000 () | 4705223..4705378 | - | 156 | WP_000333503.1 | GpE family phage tail protein | - |
| Eco28_RS24005 () | 4705387..4705761 | - | 375 | WP_050901167.1 | phage tail protein | - |
| Eco28_RS24010 () | 4705818..4706330 | - | 513 | WP_000290466.1 | phage major tail tube protein | - |
| Eco28_RS24015 () | 4706330..4707514 | - | 1185 | WP_063809643.1 | phage tail sheath family protein | - |
| Eco28_RS24020 () | 4707672..4708772 | + | 1101 | WP_063809644.1 | phage late control D family protein | - |
| Eco28_RS24025 () | 4708815..4709075 | + | 261 | WP_000488105.1 | ogr/Delta-like zinc finger family protein | - |
| Eco28_RS24030 () | 4709267..4709407 | + | 141 | WP_000078920.1 | Hok/Gef family protein | - |
| Eco28_RS28685 () | 4709634..4709771 | - | 138 | WP_212633414.1 | membrane protein insertion efficiency factor YidD | - |
| Eco28_RS24040 () | 4709764..4710006 | - | 243 | WP_000288983.1 | hypothetical protein | - |
| Eco28_RS24045 () | 4710182..4710523 | - | 342 | WP_001219160.1 | gamma-glutamylcyclotransferase | - |
| Eco28_RS24050 () | 4710526..4714305 | - | 3780 | WP_080030365.1 | autotransporter assembly complex protein TamB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|