MGE detailed information
MGE type: Genomic_island MGE length: 77846 bp
Accession: NZ_CP019944 Location: 4086675..4164520 Organism: Escherichia coli strain DSM 103246 Replicon: chromosome
Accession: NZ_CP019944 Location: 4086675..4164520 Organism: Escherichia coli strain DSM 103246 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Eco28_RS20915 () | 4083039..4084727 | + | 1689 | WP_021577044.1 | choline dehydrogenase | - |
| Eco28_RS28220 () | 4085404..4085538 | - | 135 | WP_024248239.1 | hypothetical protein | - |
| Eco28_RS20930 () | 4085783..4086345 | + | 563 | Protein_3866 | tyrosine-type DNA invertase IpbA | - |
| Eco28_RS20935 () | 4086675..4087469 | + | 795 | WP_080030306.1 | LuxR family transcriptional regulator HyxR | - |
| Eco28_RS20940 () | 4087623..4088384 | + | 762 | WP_001213049.1 | protein HyxA | - |
| Eco28_RS28225 () | 4088426..4089478 | + | 1053 | Protein_3869 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| Eco28_RS28230 () | 4089701..4090894 | + | 1194 | WP_088172493.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| Eco28_RS20950 () | 4091076..4091744 | + | 669 | WP_021577041.1 | hypothetical protein | - |
| Eco28_RS20965 () | 4091987..4092682 | - | 696 | WP_021577040.1 | lactate utilization protein C | - |
| Eco28_RS20970 () | 4092675..4094102 | - | 1428 | WP_021577039.1 | iron-sulfur cluster-binding protein | - |
| Eco28_RS20975 () | 4094113..4094832 | - | 720 | WP_021577038.1 | (Fe-S)-binding protein | - |
| Eco28_RS20980 () | 4095360..4096214 | - | 855 | WP_000339593.1 | DNA-binding transcriptional regulator RclR | - |
| Eco28_RS20985 () | 4096440..4097765 | + | 1326 | WP_021577037.1 | pyridine nucleotide-disulfide oxidoreductase | - |
| Eco28_RS20990 () | 4097874..4098110 | + | 237 | WP_000474077.1 | DUF1471 domain-containing protein | - |
| Eco28_RS20995 () | 4098122..4098715 | + | 594 | WP_021577036.1 | reactive chlorine species resistance protein RclC | - |
| Eco28_RS21000 () | 4098875..4099744 | - | 870 | Protein_3879 | aldo/keto reductase | - |
| Eco28_RS21005 () | 4099992..4100849 | + | 858 | WP_021577035.1 | HTH-type transcriptional activator RhaR | VF |
| Eco28_RS21010 () | 4100970..4105223 | - | 4254 | WP_080030308.1 | hypothetical protein | VF |
| Eco28_RS21015 () | 4105788..4106639 | + | 852 | WP_021577033.1 | aldo/keto reductase | - |
| Eco28_RS21020 () | 4106666..4107655 | + | 990 | WP_001172290.1 | aldo/keto reductase | - |
| Eco28_RS21025 () | 4107687..4108580 | - | 894 | WP_000910718.1 | HTH-type transcriptional regulator ArgP | VF |
| Eco28_RS21030 () | 4108781..4109707 | - | 927 | WP_001307603.1 | HTH-type transcriptional regulator PgrR | VF |
| Eco28_RS21035 () | 4109864..4110784 | + | 921 | WP_000860023.1 | alpha/beta hydrolase | - |
| Eco28_RS21040 () | 4111029..4112171 | + | 1143 | WP_021577031.1 | NADH-dependent flavin oxidoreductase | - |
| Eco28_RS21045 () | 4112645..4112746 | + | 102 | WP_000662258.1 | hypothetical protein | - |
| Eco28_RS21055 () | 4113109..4113372 | + | 264 | WP_024248236.1 | type B 50S ribosomal protein L31 | - |
| Eco28_RS21060 () | 4113372..4113512 | + | 141 | WP_000866436.1 | type B 50S ribosomal protein L36 | - |
| Eco28_RS21065 () | 4113547..4113713 | - | 167 | Protein_3891 | hypothetical protein | - |
| Eco28_RS21075 () | 4114595..4115137 | + | 543 | WP_001296902.1 | HTH-type transcriptional regulator EcpR | VF |
| Eco28_RS21080 () | 4115212..4115799 | + | 588 | WP_000730974.1 | Common pilus major fimbrillin subunit EcpA | VF |
| Eco28_RS21085 () | 4115857..4116525 | + | 669 | WP_021577028.1 | putative fimbrial chaperone EcpB | VF |
| Eco28_RS21090 () | 4116551..4119076 | + | 2526 | WP_080030309.1 | putative outer membrane usher protein EcpC | VF |
| Eco28_RS21095 () | 4119066..4120709 | + | 1644 | WP_080030310.1 | Fimbria adhesin EcpD | VF |
| Eco28_RS21100 () | 4120678..4121388 | + | 711 | WP_001359370.1 | putative fimbrial chaperone EcpE | VF |
| Eco28_RS21105 () | 4121701..4122030 | + | 330 | WP_001307600.1 | YkgJ family cysteine cluster protein | - |
| Eco28_RS21110 () | 4122277..4122891 | - | 615 | WP_001019920.1 | YagU family protein | - |
| Eco28_RS21120 () | 4123309..4123998 | + | 690 | WP_080030311.1 | aldehyde dehydrogenase iron-sulfur subunit | - |
| Eco28_RS21125 () | 4123995..4124951 | + | 957 | WP_000643325.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
| Eco28_RS21130 () | 4124948..4127146 | + | 2199 | WP_000667039.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| Eco28_RS21135 () | 4127156..4128112 | + | 957 | WP_000121355.1 | molybdenum cofactor insertion chaperone PaoD | - |
| Eco28_RS21140 () | 4128163..4128501 | + | 339 | Protein_3904 | LysR family transcriptional regulator | - |
| Eco28_RS21145 () | 4128840..4130159 | + | 1320 | WP_000144688.1 | Prophage integrase IntA ; Integrase | Integrase |
| Eco28_RS21150 () | 4130252..4131100 | - | 849 | WP_001280470.1 | DUF4942 domain-containing protein | - |
| Eco28_RS28235 () | 4131185..4131382 | - | 198 | WP_089075429.1 | DUF957 domain-containing protein | - |
| Eco28_RS28240 () | 4131410..4131607 | - | 198 | Protein_3908 | hypothetical protein | - |
| Eco28_RS21160 () | 4131604..4131981 | - | 378 | WP_000854821.1 | type IV toxin-antitoxin system toxin CbtA | Toxin Detail |
| Eco28_RS21165 () | 4132071..4132439 | - | 369 | WP_024214935.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| Eco28_RS21170 () | 4132519..4132740 | - | 222 | WP_000692350.1 | DUF987 domain-containing protein | - |
| Eco28_RS21175 () | 4132827..4133303 | - | 477 | WP_001186745.1 | RadC family protein | - |
| Eco28_RS21180 () | 4133319..4133804 | - | 486 | WP_024214936.1 | antirestriction protein | - |
| Eco28_RS21185 () | 4133896..4134714 | - | 819 | WP_001234397.1 | DUF945 domain-containing protein | - |
| Eco28_RS21190 () | 4134804..4135037 | - | 234 | WP_001117566.1 | DUF905 family protein | - |
| Eco28_RS21195 () | 4135108..4137954 | - | 2847 | WP_080030313.1 | Ag43/Cah family autotransporter adhesin | - |
| Eco28_RS21200 () | 4138326..4139198 | - | 873 | WP_089620060.1 | GTPase family protein | - |
| Eco28_RS21205 () | 4139529..4139711 | + | 183 | WP_000282126.1 | hypothetical protein | - |
| Eco28_RS21210 () | 4140011..4140429 | - | 419 | Protein_3919 | IS66 family transposase ISEc47 | Transposase |
| Eco28_RS21215 () | 4140569..4140934 | - | 366 | Protein_3920 | transposase | - |
| Eco28_RS21220 () | 4141182..4143266 | + | 2085 | Protein_3921 | class I SAM-dependent DNA methyltransferase | - |
| Eco28_RS21225 () | 4143334..4144314 | + | 981 | WP_000019440.1 | IS5 family transposase ISKpn26 | Transposase |
| Eco28_RS21230 () | 4144460..4145167 | + | 708 | Protein_3923 | lactate dehydrogenase | - |
| Eco28_RS21235 () | 4145164..4147209 | + | 2046 | WP_001060305.1 | DEAD/DEAH box helicase | - |
| Eco28_RS21240 () | 4147202..4148380 | + | 1179 | WP_001065545.1 | GIY-YIG nuclease family protein | - |
| Eco28_RS21245 () | 4148609..4149028 | - | 420 | Protein_3926 | DDE-type integrase/transposase/recombinase | - |
| Eco28_RS28250 () | 4149112..4149264 | + | 153 | WP_153445063.1 | hypothetical protein | - |
| Eco28_RS21255 () | 4149290..4150909 | + | 1620 | Protein_3928 | ISL3 family transposase ISEc38 | Transposase |
| Eco28_RS21260 () | 4150989..4151281 | + | 293 | Protein_3929 | gamma-glutamyltransferase | - |
| Eco28_RS21265 () | 4151321..4152355 | - | 1035 | WP_000656352.1 | phosphotriesterase | - |
| Eco28_RS21270 () | 4152358..4153239 | - | 882 | WP_080030316.1 | DMT family transporter | - |
| Eco28_RS21275 () | 4153214..4154422 | - | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| Eco28_RS21280 () | 4154509..4154661 | - | 153 | Protein_3933 | DMT family transporter | - |
| Eco28_RS21285 () | 4154718..4155476 | - | 759 | WP_001066367.1 | hypothetical protein | - |
| Eco28_RS21290 () | 4155490..4156704 | - | 1215 | WP_000667429.1 | DeoR family transcriptional regulator | - |
| Eco28_RS21295 () | 4156900..4157260 | - | 361 | Protein_3936 | transposase | - |
| Eco28_RS21300 () | 4157322..4157445 | + | 124 | Protein_3937 | transposase | - |
| Eco28_RS21305 () | 4157552..4158780 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| Eco28_RS28255 () | 4158791..4159346 | + | 556 | Protein_3939 | IS3 family transposase | - |
| Eco28_RS21320 () | 4159582..4160982 | - | 1401 | WP_000086499.1 | aspartate ammonia-lyase | - |
| Eco28_RS21325 () | 4161205..4162503 | - | 1299 | WP_000262197.1 | anaerobic C4-dicarboxylate transporter | - |
| Eco28_RS21330 () | 4162562..4163281 | - | 720 | WP_000677248.1 | amino acid racemase | - |
| Eco28_RS21335 () | 4163621..4164520 | + | 900 | WP_000789106.1 | hypochlorite stress DNA-binding transcriptional regulator HypT | - |
| Eco28_RS21345 () | 4165180..4165680 | + | 501 | Protein_3944 | IS200/IS605 family transposase | - |
| Eco28_RS21350 () | 4165755..4166243 | - | 489 | Protein_3945 | MFS transporter | - |
| Eco28_RS21355 () | 4166318..4167466 | - | 1149 | WP_000705006.1 | galactonate dehydratase | - |
| Eco28_RS21360 () | 4167463..4168080 | - | 618 | WP_001198735.1 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase | - |
| Eco28_RS21365 () | 4168064..4168942 | - | 879 | WP_000127080.1 | 2-dehydro-3-deoxygalactonokinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|