MGE detailed information
MGE type: Prophage MGE length: 77054 bp
Accession: NZ_CP019944 Location: 2452882..2529935 Organism: Escherichia coli strain DSM 103246 Replicon: chromosome
Accession: NZ_CP019944 Location: 2452882..2529935 Organism: Escherichia coli strain DSM 103246 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Eco28_RS12675 () | 2448781..2450001 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| Eco28_RS12680 () | 2450126..2450821 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| Eco28_RS12685 () | 2450774..2452066 | - | 1293 | WP_080030454.1 | voltage-gated ClC-type chloride channel ClcB | - |
| Eco28_RS12690 () | 2452225..2452839 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| Eco28_RS12695 () | 2452882..2453736 | - | 855 | WP_000526494.1 | dimethyl sulfoxide reductase anchor subunit | - |
| Eco28_RS12700 () | 2453738..2454355 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| Eco28_RS12705 () | 2454366..2456789 | - | 2424 | WP_001342404.1 | dimethyl sulfoxide reductase subunit A | - |
| Eco28_RS12710 () | 2456850..2459276 | - | 2427 | WP_080030135.1 | dimethyl sulfoxide reductase subunit A | - |
| Eco28_RS12715 () | 2459475..2459780 | - | 306 | WP_021577501.1 | DUF1161 domain-containing protein | - |
| Eco28_RS12720 () | 2459888..2460598 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| Eco28_RS12725 () | 2460601..2461161 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| Eco28_RS12730 () | 2461196..2461537 | - | 342 | WP_000705197.1 | DUF1283 family protein | - |
| Eco28_RS12735 () | 2461672..2461998 | + | 327 | WP_021577500.1 | YnfA family protein | - |
| Eco28_RS12745 () | 2462204..2463418 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| Eco28_RS12750 () | 2463430..2464449 | + | 1020 | WP_000836079.1 | Zn-dependent oxidoreductase | - |
| Eco28_RS12755 () | 2464507..2464617 | + | 111 | WP_001360138.1 | hypothetical protein | - |
| Eco28_RS12760 () | 2464637..2465917 | - | 1281 | WP_000876979.1 | Putative defective protein IntQ ; Integrase | Integrase |
| Eco28_RS12765 () | 2465952..2466203 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| Eco28_RS12770 () | 2466276..2468747 | - | 2472 | WP_033815598.1 | exonuclease | - |
| Eco28_RS12775 () | 2468841..2469032 | - | 192 | WP_001083280.1 | lysis protein YdfD | - |
| Eco28_RS12780 () | 2469029..2469217 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| Eco28_RS12785 () | 2469704..2470279 | - | 576 | WP_000344954.1 | hypothetical protein | - |
| Eco28_RS12790 () | 2470281..2470436 | - | 156 | WP_000379589.1 | DUF1391 family protein | - |
| Eco28_RS12795 () | 2470629..2471036 | - | 408 | WP_001003381.1 | helix-turn-helix domain-containing protein | - |
| Eco28_RS12800 () | 2471114..2471341 | + | 228 | WP_000476993.1 | transcriptional regulator | - |
| Eco28_RS12805 () | 2471325..2471846 | + | 522 | WP_000705349.1 | hypothetical protein | - |
| Eco28_RS12810 () | 2471827..2472792 | + | 966 | WP_000054504.1 | hypothetical protein | - |
| Eco28_RS12815 () | 2472833..2473252 | + | 420 | WP_001151195.1 | DUF977 family protein | - |
| Eco28_RS12820 () | 2473286..2474626 | + | 1341 | WP_004196353.1 | ISNCY family transposase ISCARN112 | Transposase |
| Eco28_RS12825 () | 2475063..2475395 | - | 333 | WP_001301033.1 | protein FlxA | - |
| Eco28_RS12830 () | 2475598..2475903 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| Eco28_RS12835 () | 2475928..2476167 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| Eco28_RS12840 () | 2476167..2476454 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| Eco28_RS12845 () | 2476526..2476681 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| Eco28_RS12850 () | 2476898..2477149 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| Eco28_RS12855 () | 2477216..2477494 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| Eco28_RS12860 () | 2477496..2478545 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| Eco28_RS12865 () | 2478559..2479311 | + | 753 | WP_001047135.1 | antitermination protein | - |
| Eco28_RS28100 () | 2479589..2479678 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| Eco28_RS12870 () | 2479733..2479945 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| Eco28_RS12875 () | 2480246..2480461 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| Eco28_RS28620 () | 2480825..2480995 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| Eco28_RS12880 () | 2481215..2481430 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| Eco28_RS12885 () | 2481435..2481746 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| Eco28_RS12890 () | 2481743..2482276 | + | 534 | WP_001092971.1 | lysozyme | - |
| Eco28_RS12895 () | 2482273..2482770 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| Eco28_RS12900 () | 2483133..2483345 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| Eco28_RS12905 () | 2483356..2483544 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| Eco28_RS28105 () | 2483547..2483612 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| Eco28_RS12910 () | 2483692..2483847 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| Eco28_RS12915 () | 2484019..2484192 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| Eco28_RS12920 () | 2484344..2484754 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| Eco28_RS12925 () | 2484812..2485045 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| Eco28_RS12930 () | 2485434..2485979 | + | 546 | WP_000453603.1 | DNA-packaging protein | - |
| Eco28_RS12935 () | 2485954..2487879 | + | 1926 | WP_001549229.1 | phage terminase large subunit family protein | - |
| Eco28_RS12940 () | 2487876..2488082 | + | 207 | WP_000198149.1 | gpW family protein | - |
| Eco28_RS12945 () | 2488079..2489680 | + | 1602 | WP_001324962.1 | phage portal protein | - |
| Eco28_RS12950 () | 2489661..2490980 | + | 1320 | WP_000123333.1 | S49 family peptidase | - |
| Eco28_RS12955 () | 2490990..2491322 | + | 333 | WP_001549228.1 | head decoration protein | - |
| Eco28_RS12960 () | 2491378..2491623 | + | 246 | Protein_2398 | major capsid protein | - |
| Eco28_RS12965 () | 2491786..2493021 | + | 1236 | WP_000896723.1 | Prophage integrase IntS ; Integrase | Integrase |
| Eco28_RS12970 () | 2493023..2493250 | + | 228 | WP_000737991.1 | AlpA family phage regulatory protein | - |
| Eco28_RS12975 () | 2493320..2493857 | - | 538 | Protein_2401 | hypothetical protein | - |
| Eco28_RS12980 () | 2494208..2494510 | - | 303 | WP_001588496.1 | hypothetical protein | - |
| Eco28_RS12985 () | 2494719..2495084 | + | 366 | WP_000929264.1 | host cell division inhibitor Icd-like protein | - |
| Eco28_RS12990 () | 2495077..2495301 | + | 225 | WP_000999172.1 | hypothetical protein | - |
| Eco28_RS12995 () | 2495305..2495592 | + | 288 | WP_000790824.1 | DUF4222 domain-containing protein | - |
| Eco28_RS13000 () | 2495589..2497409 | + | 1821 | WP_000817024.1 | DNA primase | - |
| Eco28_RS13005 () | 2497697..2497942 | + | 246 | WP_000125506.1 | hypothetical protein | - |
| Eco28_RS13010 () | 2497939..2498388 | + | 450 | WP_000126718.1 | single-stranded DNA-binding protein | - |
| Eco28_RS13015 () | 2498606..2499646 | + | 1041 | WP_000228111.1 | major capsid protein | - |
| Eco28_RS13020 () | 2499656..2499997 | + | 342 | WP_000190773.1 | head decoration protein | - |
| Eco28_RS13025 () | 2500009..2500392 | + | 384 | WP_001178672.1 | AlpA family phage regulatory protein | - |
| Eco28_RS13035 () | 2500991..2502133 | - | 1143 | WP_000688840.1 | TIR domain-containing protein | - |
| Eco28_RS13040 () | 2502343..2503131 | + | 789 | Protein_2413 | major capsid protein | - |
| Eco28_RS13045 () | 2503173..2503568 | + | 396 | WP_000158880.1 | DNA-packaging protein FI | - |
| Eco28_RS13050 () | 2503580..2503933 | + | 354 | WP_000752994.1 | head-tail joining protein | - |
| Eco28_RS13055 () | 2503945..2504523 | + | 579 | WP_000985116.1 | phage tail protein | - |
| Eco28_RS13060 () | 2504520..2504915 | + | 396 | WP_000683143.1 | phage minor tail U family protein | - |
| Eco28_RS13065 () | 2504923..2505663 | + | 741 | WP_001439072.1 | phage tail protein | - |
| Eco28_RS13070 () | 2505679..2506101 | + | 423 | WP_000479139.1 | phage minor tail protein G | - |
| Eco28_RS13075 () | 2506083..2506517 | + | 435 | WP_000459480.1 | phage tail assembly protein T | - |
| Eco28_RS13080 () | 2506510..2509089 | + | 2580 | WP_000840345.1 | phage tail tape measure protein | - |
| Eco28_RS13085 () | 2509086..2509415 | + | 330 | WP_000847345.1 | phage tail protein | - |
| Eco28_RS13090 () | 2509415..2510113 | + | 699 | WP_001152580.1 | phage minor tail protein L | - |
| Eco28_RS13095 () | 2510119..2510862 | + | 744 | WP_000140764.1 | C40 family peptidase | - |
| Eco28_RS13100 () | 2510799..2511401 | + | 603 | WP_000090905.1 | tail assembly protein | - |
| Eco28_RS13105 () | 2511462..2514941 | + | 3480 | WP_080030136.1 | host specificity protein J | - |
| Eco28_RS13110 () | 2515009..2515608 | + | 600 | WP_080030137.1 | Outer membrane protein X | VF |
| Eco28_RS13115 () | 2515673..2518741 | + | 3069 | Protein_2428 | prophage tail fiber N-terminal domain-containing protein | - |
| Eco28_RS13120 () | 2518902..2521868 | - | 2967 | WP_001138014.1 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| Eco28_RS13125 () | 2521872..2522432 | - | 561 | WP_001161490.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| Eco28_RS13130 () | 2522742..2524319 | + | 1578 | WP_001323889.1 | Aerotaxis receptor | VF |
| Eco28_RS13135 () | 2524543..2524716 | + | 174 | WP_044715785.1 | tail protein | - |
| Eco28_RS13140 () | 2524716..2525291 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| Eco28_RS13145 () | 2525389..2525979 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| Eco28_RS13150 () | 2526296..2526529 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| Eco28_RS13155 () | 2526759..2527987 | + | 1229 | WP_116315299.1 | IS3 family transposase IS2 | Transposase |
| Eco28_RS13160 () | 2528652..2529935 | + | 1284 | Protein_2437 | MHS family MFS transporter YdfJ | - |
| Eco28_RS13165 () | 2530024..2531484 | + | 1461 | WP_021577480.1 | mannitol dehydrogenase family protein | - |
| Eco28_RS13170 () | 2531520..2531723 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| Eco28_RS13175 () | 2531900..2532586 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| Eco28_RS13180 () | 2532675..2533421 | - | 747 | WP_001296081.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|