Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2475928..2476454 | Replicon | chromosome |
| Accession | NZ_CP019944 | ||
| Organism | Escherichia coli strain DSM 103246 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | Eco28_RS12840 | Protein ID | WP_000323025.1 |
| Coordinates | 2476167..2476454 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | Eco28_RS12835 | Protein ID | WP_000534858.1 |
| Coordinates | 2475928..2476167 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Eco28_RS12800 | 2471114..2471341 | + | 228 | WP_000476993.1 | transcriptional regulator | - |
| Eco28_RS12805 | 2471325..2471846 | + | 522 | WP_000705349.1 | hypothetical protein | - |
| Eco28_RS12810 | 2471827..2472792 | + | 966 | WP_000054504.1 | hypothetical protein | - |
| Eco28_RS12815 | 2472833..2473252 | + | 420 | WP_001151195.1 | DUF977 family protein | - |
| Eco28_RS12820 | 2473286..2474626 | + | 1341 | WP_004196353.1 | ISNCY family transposase | - |
| Eco28_RS12825 | 2475063..2475395 | - | 333 | WP_001301033.1 | protein FlxA | - |
| Eco28_RS12830 | 2475598..2475903 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| Eco28_RS12835 | 2475928..2476167 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| Eco28_RS12840 | 2476167..2476454 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| Eco28_RS12845 | 2476526..2476681 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| Eco28_RS12850 | 2476898..2477149 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| Eco28_RS12855 | 2477216..2477494 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| Eco28_RS12860 | 2477496..2478545 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| Eco28_RS12865 | 2478559..2479311 | + | 753 | WP_001047135.1 | antitermination protein | - |
| Eco28_RS28100 | 2479589..2479678 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| Eco28_RS12870 | 2479733..2479945 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| Eco28_RS12875 | 2480246..2480461 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| Eco28_RS28620 | 2480825..2480995 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| Eco28_RS12880 | 2481215..2481430 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2452882..2529935 | 77053 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T73528 WP_000323025.1 NZ_CP019944:2476167-2476454 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T73528 NZ_CP019944:2476167-2476454 [Escherichia coli]
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT73528 WP_000534858.1 NZ_CP019944:2475928-2476167 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT73528 NZ_CP019944:2475928-2476167 [Escherichia coli]
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|