MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 93873 bp
Accession: NZ_CP019873 Location: 1..93873 Organism: Pseudomonas syringae pv. tomato strain B13-200 Replicon: plasmid pB13-200B
Accession: NZ_CP019873 Location: 1..93873 Organism: Pseudomonas syringae pv. tomato strain B13-200 Replicon: plasmid pB13-200B
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XJ28_RS30795 () | 178..1200 | + | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| XJ28_RS30800 () | 1197..2006 | + | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| XJ28_RS30805 () | 2074..2778 | - | 705 | WP_105224175.1 | ParA family protein | - |
| XJ28_RS30810 () | 3597..6287 | + | 2691 | WP_105224176.1 | AAA family ATPase | - |
| XJ28_RS30820 () | 6733..10251 | + | 3519 | WP_105224177.1 | phospholipase | - |
| XJ28_RS30825 () | 10349..11779 | + | 1431 | WP_105223910.1 | IS1182 family transposase ISPmo1 | Transposase |
| XJ28_RS30830 () | 12199..12549 | - | 351 | WP_105224178.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| XJ28_RS30835 () | 12562..12810 | - | 249 | WP_105224179.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| XJ28_RS30840 () | 13141..14100 | + | 960 | WP_105224213.1 | tyrosine-type recombinase/integrase | - |
| XJ28_RS30845 () | 14131..15114 | - | 984 | Protein_10 | type III effector | - |
| XJ28_RS30850 () | 15821..18166 | - | 2346 | WP_105224180.1 | type III secretion system helper protein HrpK1 | - |
| XJ28_RS30855 () | 18726..18911 | - | 186 | WP_105224181.1 | hypothetical protein | - |
| XJ28_RS30860 () | 19050..20030 | - | 981 | WP_105223850.1 | IS5 family transposase ISPa41 | Transposase |
| XJ28_RS30865 () | 20099..21196 | + | 1098 | WP_208992936.1 | type III effector | - |
| XJ28_RS30870 () | 21964..22342 | + | 379 | Protein_15 | DNA binding protein | - |
| XJ28_RS30875 () | 22720..23154 | + | 435 | WP_105224182.1 | YeeE/YedE family protein | - |
| XJ28_RS30880 () | 23157..23564 | + | 408 | WP_105224183.1 | hypothetical protein | - |
| XJ28_RS30885 () | 24313..24717 | - | 405 | WP_105224215.1 | hypothetical protein | - |
| XJ28_RS30890 () | 25260..25544 | + | 285 | WP_158692428.1 | IS66 family transposase ISPpu14 | Transposase |
| XJ28_RS30895 () | 25600..26652 | + | 1053 | WP_105224184.1 | DUF1176 domain-containing protein | - |
| XJ28_RS30900 () | 26920..27459 | - | 540 | WP_105224185.1 | hypothetical protein | - |
| XJ28_RS30905 () | 27456..27674 | - | 219 | WP_105224186.1 | hypothetical protein | - |
| XJ28_RS30910 () | 27930..28550 | - | 621 | WP_105224187.1 | hypothetical protein | - |
| XJ28_RS30915 () | 28547..28813 | - | 267 | WP_074910643.1 | hypothetical protein | - |
| XJ28_RS30925 () | 29123..29692 | + | 570 | WP_105224189.1 | hypothetical protein | - |
| XJ28_RS30930 () | 29909..31009 | - | 1101 | WP_105224190.1 | Y-family DNA polymerase | - |
| XJ28_RS30935 () | 31183..31992 | + | 810 | WP_105224191.1 | YopT-type cysteine protease domain-containing protein | - |
| XJ28_RS32855 () | 32117..32274 | - | 158 | Protein_28 | AAA family ATPase | - |
| XJ28_RS30945 () | 32645..33301 | + | 657 | WP_105224192.1 | type III secretion system effector protein | - |
| XJ28_RS30955 () | 34140..35015 | + | 876 | Protein_30 | S-type pyocin domain-containing protein | - |
| XJ28_RS30960 () | 35012..37981 | - | 2970 | WP_011107005.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| XJ28_RS30965 () | 38103..38648 | + | 546 | WP_011107006.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| XJ28_RS30970 () | 38702..39385 | - | 684 | WP_172456589.1 | type III effector | - |
| XJ28_RS32710 () | 39619..39959 | + | 341 | Protein_34 | hypothetical protein | - |
| XJ28_RS30975 () | 40142..40423 | + | 282 | WP_032710874.1 | hypothetical protein | - |
| XJ28_RS30980 () | 40404..41633 | + | 1230 | WP_050428162.1 | IS91 family transposase | - |
| XJ28_RS30990 () | 42421..42744 | - | 324 | WP_004666942.1 | hypothetical protein | - |
| XJ28_RS30995 () | 42741..43445 | - | 705 | WP_105224194.1 | ParA family protein | - |
| XJ28_RS31000 () | 44048..44857 | - | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| XJ28_RS31005 () | 44854..45876 | - | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| XJ28_RS31015 () | 46305..46442 | - | 138 | WP_105224195.1 | DUF4113 domain-containing protein | - |
| XJ28_RS31020 () | 46919..47092 | + | 174 | WP_168199514.1 | hypothetical protein | - |
| XJ28_RS32715 () | 47128..47541 | + | 414 | WP_055009574.1 | TraR/DksA family transcriptional regulator | - |
| XJ28_RS31030 () | 47700..47915 | + | 216 | WP_105224196.1 | hypothetical protein | - |
| XJ28_RS31040 () | 48245..48865 | - | 621 | WP_105224198.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| XJ28_RS31045 () | 49176..49589 | + | 414 | WP_010213659.1 | hypothetical protein | - |
| XJ28_RS31055 () | 50050..50427 | + | 378 | WP_007247501.1 | hypothetical protein | - |
| XJ28_RS31060 () | 50474..51310 | + | 837 | Protein_48 | DUF945 domain-containing protein | - |
| XJ28_RS31065 () | 51368..51556 | + | 189 | WP_007247499.1 | hypothetical protein | - |
| XJ28_RS31070 () | 51630..51908 | - | 279 | WP_007247498.1 | hypothetical protein | - |
| XJ28_RS31080 () | 52353..52682 | + | 330 | WP_003344297.1 | ribbon-helix-helix protein, CopG family | - |
| XJ28_RS31085 () | 52693..54648 | + | 1956 | WP_105224199.1 | Protein TraI | Relaxase |
| XJ28_RS31095 () | 54983..55684 | + | 702 | WP_010207517.1 | FadR family transcriptional regulator | - |
| XJ28_RS31100 () | 55753..56946 | + | 1194 | WP_010215819.1 | L-2-hydroxyglutarate oxidase | - |
| XJ28_RS31105 () | 56987..58333 | + | 1347 | WP_024668558.1 | MHS family MFS transporter | - |
| XJ28_RS31110 () | 58374..58559 | + | 186 | WP_010215822.1 | hypothetical protein | - |
| XJ28_RS31115 () | 58581..58964 | - | 384 | WP_003344338.1 | helix-turn-helix domain-containing protein | - |
| XJ28_RS31120 () | 59179..59691 | + | 513 | WP_010215826.1 | transcriptional regulator | - |
| XJ28_RS31125 () | 59780..59989 | + | 210 | WP_003344343.1 | hypothetical protein | - |
| XJ28_RS31135 () | 60282..60773 | + | 492 | WP_010215828.1 | hypothetical protein | VF |
| XJ28_RS31140 () | 60810..61283 | + | 474 | WP_032645100.1 | DotD/TraH family lipoprotein | - |
| XJ28_RS31145 () | 61280..62080 | + | 801 | WP_007247253.1 | hypothetical protein | VF |
| XJ28_RS31150 () | 62077..63255 | + | 1179 | WP_019740843.1 | Twitching mobility protein | VF |
| XJ28_RS31155 () | 63287..63520 | + | 234 | WP_004644386.1 | hypothetical protein | - |
| XJ28_RS31160 () | 63558..63806 | + | 249 | WP_032649099.1 | hypothetical protein | - |
| XJ28_RS31165 () | 64008..64559 | + | 552 | WP_007247250.1 | Phospholipase D | VF |
| XJ28_RS31170 () | 64596..64841 | + | 246 | WP_005769780.1 | hypothetical protein | - |
| XJ28_RS31175 () | 64870..65157 | + | 288 | WP_003344363.1 | IcmT/TraK family protein | - |
| XJ28_RS31180 () | 65200..69825 | + | 4626 | WP_105224200.1 | DNA primase | - |
| XJ28_RS31185 () | 69851..70204 | + | 354 | WP_005740389.1 | hypothetical protein | - |
| XJ28_RS31190 () | 70201..70908 | + | 708 | WP_105224201.1 | DotI/IcmL family type IV secretion protein | - |
| XJ28_RS31195 () | 70965..72023 | + | 1059 | WP_105224202.1 | hypothetical protein | VF |
| XJ28_RS31200 () | 72029..73387 | + | 1359 | WP_105224203.1 | conjugal transfer protein TraO | - |
| XJ28_RS31205 () | 73384..74094 | + | 711 | WP_105224204.1 | conjugal transfer protein TraP | - |
| XJ28_RS31210 () | 74103..74645 | + | 543 | WP_057453453.1 | conjugal transfer protein TraQ | - |
| XJ28_RS31215 () | 74721..75116 | + | 396 | WP_054070272.1 | hypothetical protein | VF |
| XJ28_RS31220 () | 75160..75435 | - | 276 | WP_005622170.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| XJ28_RS31225 () | 75413..75613 | - | 201 | WP_005622172.1 | hypothetical protein | - |
| XJ28_RS31230 () | 75798..76409 | + | 612 | WP_005622174.1 | hypothetical protein | - |
| XJ28_RS31235 () | 76384..79440 | + | 3057 | WP_105224205.1 | conjugal transfer protein | - |
| XJ28_RS31240 () | 79464..79700 | + | 237 | WP_105224206.1 | hypothetical protein | - |
| XJ28_RS31245 () | 79722..80111 | + | 390 | WP_015060667.1 | hypothetical protein | - |
| XJ28_RS31250 () | 80123..81337 | + | 1215 | WP_105224207.1 | conjugal transfer protein TraW | - |
| XJ28_RS31255 () | 81327..81929 | + | 603 | WP_007247239.1 | conjugal transfer protein TraX | - |
| XJ28_RS31260 () | 81958..84102 | + | 2145 | WP_105224208.1 | DotA/TraY family protein | - |
| XJ28_RS31265 () | 84204..84449 | + | 246 | WP_003344389.1 | hypothetical protein | - |
| XJ28_RS31270 () | 84446..85096 | + | 651 | WP_011107037.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| XJ28_RS31275 () | 85189..86388 | + | 1200 | WP_105224209.1 | conjugal transfer protein | - |
| XJ28_RS31280 () | 86474..87559 | + | 1086 | WP_105224210.1 | thioredoxin fold domain-containing protein | - |
| XJ28_RS31285 () | 87546..89834 | + | 2289 | WP_105224211.1 | type IV secretory system conjugative DNA transfer family protein | - |
| XJ28_RS31290 () | 89912..90340 | + | 429 | WP_011107000.1 | GntR family transcriptional regulator | - |
| XJ28_RS31295 () | 90750..92063 | + | 1314 | WP_060410039.1 | replication initiation protein | - |
| XJ28_RS31300 () | 92202..92627 | + | 426 | WP_010209623.1 | S24 family peptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|