MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 197098 bp
Accession: NZ_CP019427 Location: 590950..788047 Organism: Pseudomonas sp. S04 Replicon: chromosome
Accession: NZ_CP019427 Location: 590950..788047 Organism: Pseudomonas sp. S04 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PspS04_RS02505 () | 587049..588614 | - | 1566 | WP_159993453.1 | iron ABC transporter permease | - |
| PspS04_RS02510 () | 588614..589624 | - | 1011 | WP_095169566.1 | extracellular solute-binding protein | - |
| PspS04_RS02525 () | 590465..593095 | + | 2631 | WP_159993455.1 | ribonuclease R | - |
| PspS04_RS02530 () | 593092..593859 | + | 768 | WP_159993457.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| PspS04_RS02535 () | 594174..594596 | + | 423 | WP_003217491.1 | 30S ribosomal protein S6 | - |
| PspS04_RS02540 () | 594625..594855 | + | 231 | WP_002551829.1 | 30S ribosomal protein S18 | - |
| PspS04_RS02545 () | 594892..595785 | + | 894 | WP_095169563.1 | hypothetical protein | - |
| PspS04_RS02550 () | 595805..596251 | + | 447 | WP_095169562.1 | 50S ribosomal protein L9 | - |
| PspS04_RS02555 () | 596362..597756 | + | 1395 | WP_017336265.1 | replicative DNA helicase | - |
| PspS04_RS02560 () | 597942..600248 | + | 2307 | WP_095169561.1 | YgiQ family radical SAM protein | - |
| PspS04_RS02565 () | 600612..603902 | + | 3291 | WP_159993459.1 | transglutaminase family protein | - |
| PspS04_RS02570 () | 603960..606446 | + | 2487 | WP_159993461.1 | circularly permuted type 2 ATP-grasp protein | - |
| PspS04_RS02575 () | 606443..607336 | + | 894 | WP_159993463.1 | transglutaminase family protein | - |
| PspS04_RS02580 () | 607405..607596 | - | 192 | WP_095169557.1 | hypothetical protein | - |
| PspS04_RS02585 () | 607665..608252 | - | 588 | WP_095169556.1 | TIGR00730 family Rossman fold protein | - |
| PspS04_RS02590 () | 608596..609042 | + | 447 | WP_095169555.1 | azurin | - |
| PspS04_RS02595 () | 609301..610128 | - | 828 | WP_159993465.1 | ammonia-dependent NAD(+) synthetase | - |
| PspS04_RS02600 () | 610133..611359 | - | 1227 | WP_095169553.1 | nicotinate phosphoribosyltransferase | - |
| PspS04_RS02605 () | 611489..612394 | - | 906 | WP_159993467.1 | LysR family transcriptional regulator | - |
| PspS04_RS02610 () | 612559..614049 | + | 1491 | WP_095169551.1 | aldehyde dehydrogenase family protein | - |
| PspS04_RS02615 () | 614139..615422 | + | 1284 | WP_095169550.1 | FAD-binding oxidoreductase | - |
| PspS04_RS02620 () | 615786..616919 | + | 1134 | WP_095169549.1 | branched-chain amino acid ABC transporter substrate-binding protein | - |
| PspS04_RS02625 () | 617149..618063 | + | 915 | WP_095169548.1 | branched-chain amino acid ABC transporter permease LivH | - |
| PspS04_RS02630 () | 618067..619374 | + | 1308 | WP_095169547.1 | high-affinity branched-chain amino acid ABC transporter permease LivM | - |
| PspS04_RS02635 () | 619367..620239 | + | 873 | WP_095169546.1 | DnaA initiator-associating protein DiaA | VF |
| PspS04_RS02640 () | 620236..620952 | + | 717 | WP_095169545.1 | ABC transporter ATP-binding protein | - |
| PspS04_RS02645 () | 621704..622471 | + | 768 | WP_095169544.1 | SDR family oxidoreductase | - |
| PspS04_RS02650 () | 622569..623477 | + | 909 | WP_095169543.1 | cation diffusion facilitator family transporter | - |
| PspS04_RS02655 () | 623514..624647 | - | 1134 | WP_159993469.1 | AGE family epimerase/isomerase | - |
| PspS04_RS02660 () | 624703..625275 | - | 573 | WP_095169541.1 | HupE/UreJ family protein | - |
| PspS04_RS02665 () | 625313..625927 | - | 615 | WP_095169540.1 | Galactitol 1-phosphate 5-dehydrogenase | VF |
| PspS04_RS02670 () | 625951..626625 | - | 675 | WP_159993471.1 | urease accessory protein UreF | - |
| PspS04_RS02675 () | 626622..627122 | - | 501 | WP_159993473.1 | urease accessory protein UreE | - |
| PspS04_RS02680 () | 627324..627956 | - | 633 | WP_095169537.1 | TetR family transcriptional regulator | - |
| PspS04_RS02685 () | 628125..628466 | - | 342 | WP_095169536.1 | hypothetical protein | - |
| PspS04_RS02690 () | 628856..630925 | + | 2070 | WP_159993475.1 | AsmA family protein | - |
| PspS04_RS02695 () | 630991..631521 | - | 531 | WP_095169534.1 | bacterioferritin | - |
| PspS04_RS02700 () | 631760..632650 | + | 891 | WP_159993477.1 | triacylglycerol lipase | - |
| PspS04_RS02705 () | 632661..633536 | - | 876 | WP_159993479.1 | DMT family transporter | - |
| PspS04_RS02710 () | 633633..634415 | + | 783 | WP_095169531.1 | helix-turn-helix transcriptional regulator | - |
| PspS04_RS02715 () | 634636..635541 | + | 906 | WP_159993481.1 | hypothetical protein | - |
| PspS04_RS02720 () | 635676..635981 | + | 306 | WP_095169529.1 | phosphate starvation-inducible protein PsiF | - |
| PspS04_RS02725 () | 636109..637122 | + | 1014 | WP_095169528.1 | hypothetical protein | - |
| PspS04_RS02730 () | 637850..639025 | - | 1176 | WP_159993483.1 | IS481 family transposase ISHne2 | Transposase |
| PspS04_RS02735 () | 639308..640582 | - | 1275 | WP_159993485.1 | Hsp70 family protein | - |
| PspS04_RS02740 () | 640875..641816 | + | 942 | WP_159993487.1 | DnaJ domain-containing protein | - |
| PspS04_RS02745 () | 641856..642161 | + | 306 | WP_095171081.1 | chaperone modulator CbpM | - |
| PspS04_RS27560 () | 642167..643072 | - | 906 | WP_159993489.1 | RHS repeat-associated core domain-containing protein | - |
| PspS04_RS02755 () | 643465..648549 | + | 5085 | WP_159993491.1 | hypothetical protein | - |
| PspS04_RS02760 () | 648604..650304 | - | 1701 | WP_159993493.1 | Urease subunit alpha | VF |
| PspS04_RS02765 () | 650444..650749 | - | 306 | WP_095171089.1 | Pirin-like protein YhaK | VF |
| PspS04_RS02770 () | 650746..651279 | - | 534 | WP_159993495.1 | GNAT family N-acetyltransferase | - |
| PspS04_RS02775 () | 651286..651819 | - | 534 | WP_159993497.1 | GNAT family N-acetyltransferase | - |
| PspS04_RS02780 () | 651829..652131 | - | 303 | WP_159993499.1 | Glutathionyl-hydroquinone reductase YqjG | VF |
| PspS04_RS02785 () | 652198..653037 | - | 840 | WP_159993501.1 | urease accessory protein UreD | - |
| PspS04_RS02790 () | 653068..653766 | - | 699 | WP_159993503.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| PspS04_RS02795 () | 653835..654695 | - | 861 | WP_159993505.1 | urea ABC transporter ATP-binding protein UrtD | - |
| PspS04_RS02800 () | 654692..655771 | - | 1080 | WP_159993507.1 | urea ABC transporter permease subunit UrtC | - |
| PspS04_RS02805 () | 655771..657270 | - | 1500 | WP_174244561.1 | urea ABC transporter permease subunit UrtB | - |
| PspS04_RS02810 () | 657403..658668 | - | 1266 | WP_095171104.1 | urea ABC transporter substrate-binding protein | - |
| PspS04_RS02815 () | 658916..659338 | - | 423 | WP_159993509.1 | hypothetical protein | - |
| PspS04_RS02820 () | 659557..660939 | - | 1383 | WP_159993511.1 | PepSY domain-containing protein | - |
| PspS04_RS02825 () | 661055..663184 | - | 2130 | WP_159993513.1 | Hexuronate transporter | VF |
| PspS04_RS02830 () | 663275..663637 | - | 363 | WP_159998722.1 | DUF2946 domain-containing protein | - |
| PspS04_RS02835 () | 663749..664228 | - | 480 | WP_095171161.1 | copper chaperone PCu(A)C | - |
| PspS04_RS02840 () | 664290..664691 | - | 402 | WP_095171109.1 | DUF2946 domain-containing protein | - |
| PspS04_RS02845 () | 664788..665078 | - | 291 | WP_095171111.1 | putative addiction module antidote protein | Antitoxin Detail |
| PspS04_RS02850 () | 665082..665384 | - | 303 | WP_159993515.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PspS04_RS02855 () | 665588..666316 | - | 729 | WP_159993517.1 | cobalt-precorrin-6A reductase | - |
| PspS04_RS02860 () | 666313..667410 | - | 1098 | WP_159993519.1 | cobalt-precorrin-5B (C(1))-methyltransferase | - |
| PspS04_RS02865 () | 667403..668614 | - | 1212 | WP_159993521.1 | precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE | - |
| PspS04_RS02870 () | 668733..670055 | + | 1323 | WP_159993523.1 | precorrin-3B synthase | - |
| PspS04_RS02875 () | 670048..670674 | + | 627 | WP_095171133.1 | precorrin-8X methylmutase | - |
| PspS04_RS02880 () | 670674..671405 | + | 732 | WP_095171163.1 | precorrin-2 C(20)-methyltransferase | - |
| PspS04_RS02885 () | 671405..673108 | + | 1704 | WP_159993525.1 | precorrin-3B C(17)-methyltransferase | - |
| PspS04_RS02890 () | 673366..673962 | - | 597 | WP_095171137.1 | MarC family protein | - |
| PspS04_RS02895 () | 674237..674998 | + | 762 | WP_159998724.1 | hypothetical protein | - |
| PspS04_RS02900 () | 675059..675754 | + | 696 | WP_159993527.1 | hypothetical protein | - |
| PspS04_RS02905 () | 675751..676383 | + | 633 | WP_159993529.1 | hypothetical protein | - |
| PspS04_RS02910 () | 676407..679181 | - | 2775 | WP_159993531.1 | Sensor histidine kinase RcsC | VF |
| PspS04_RS02915 () | 679284..680576 | - | 1293 | WP_159993533.1 | Phosphoribosylamine--glycine ligase | VF |
| PspS04_RS02920 () | 680730..682337 | - | 1608 | WP_159993535.1 | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | - |
| PspS04_RS02925 () | 682420..682740 | - | 321 | WP_003186237.1 | DNA-binding transcriptional regulator Fis | - |
| PspS04_RS02930 () | 682737..683747 | - | 1011 | WP_095171147.1 | tRNA dihydrouridine synthase DusB | - |
| PspS04_RS02935 () | 683934..685187 | - | 1254 | WP_159993537.1 | DUF3426 domain-containing protein | - |
| PspS04_RS02940 () | 685218..686096 | - | 879 | WP_159993539.1 | 50S ribosomal protein L11 methyltransferase | - |
| PspS04_RS02945 () | 687111..688469 | - | 1359 | WP_095170173.1 | acetyl-CoA carboxylase biotin carboxylase subunit | - |
| PspS04_RS02950 () | 688487..688948 | - | 462 | WP_095170174.1 | acetyl-CoA carboxylase biotin carboxyl carrier protein | - |
| PspS04_RS02955 () | 688997..689449 | - | 453 | WP_159993541.1 | type II 3-dehydroquinate dehydratase | - |
| PspS04_RS02960 () | 689656..691617 | - | 1962 | WP_159993543.1 | hypothetical protein | VF |
| PspS04_RS02965 () | 691670..693340 | - | 1671 | WP_095170177.1 | Regulator of RpoS | VF |
| PspS04_RS02970 () | 693626..694693 | + | 1068 | WP_159993545.1 | DUF2333 family protein | - |
| PspS04_RS02975 () | 694697..695254 | + | 558 | WP_159993547.1 | NUDIX hydrolase | - |
| PspS04_RS02980 () | 695456..695827 | + | 372 | WP_095170180.1 | translation initiation factor Sui1 | - |
| PspS04_RS02985 () | 696049..697962 | + | 1914 | WP_159993549.1 | arginine decarboxylase | - |
| PspS04_RS02990 () | 698196..699296 | + | 1101 | Protein_586 | hypothetical protein | VF |
| PspS04_RS02995 () | 699606..699743 | + | 138 | Protein_587 | hypothetical protein | VF |
| PspS04_RS03000 () | 699740..700525 | + | 786 | WP_095170183.1 | DUF4123 domain-containing protein | - |
| PspS04_RS03005 () | 700553..701902 | - | 1350 | WP_159993551.1 | MATE family efflux transporter | - |
| PspS04_RS03010 () | 702081..706982 | + | 4902 | WP_159993553.1 | alpha-2-macroglobulin family protein | - |
| PspS04_RS03015 () | 707017..707310 | - | 294 | WP_095170186.1 | hypothetical protein | - |
| PspS04_RS03020 () | 707422..709773 | + | 2352 | WP_174244608.1 | peptidoglycan glycosyltransferase PbpC | - |
| PspS04_RS03025 () | 709911..710213 | + | 303 | WP_095170187.1 | nucleotide pyrophosphohydrolase | - |
| PspS04_RS03030 () | 710213..710962 | + | 750 | WP_095170188.1 | methyltransferase domain-containing protein | - |
| PspS04_RS03035 () | 710986..711606 | + | 621 | WP_159993555.1 | DUF4136 domain-containing protein | - |
| PspS04_RS03040 () | 711647..712204 | + | 558 | WP_095170190.1 | DUF4136 domain-containing protein | - |
| PspS04_RS03045 () | 712309..714255 | + | 1947 | WP_159993557.1 | hypothetical protein | - |
| PspS04_RS03050 () | 714252..716849 | - | 2598 | WP_159998728.1 | PAS domain-containing sensor histidine kinase | - |
| PspS04_RS03055 () | 716993..717439 | - | 447 | WP_159993559.1 | pilus assembly protein | - |
| PspS04_RS03060 () | 717515..717985 | + | 471 | WP_159993561.1 | prepilin peptidase | - |
| PspS04_RS03065 () | 718099..718902 | + | 804 | WP_202982080.1 | Regulator of RpoS | VF |
| PspS04_RS03070 () | 718926..719198 | - | 273 | WP_159993565.1 | DUF3613 domain-containing protein | - |
| PspS04_RS03075 () | 719216..719938 | - | 723 | WP_159993567.1 | tetratricopeptide repeat protein | - |
| PspS04_RS03080 () | 719949..720833 | - | 885 | WP_159993569.1 | type II secretion system F family protein | - |
| PspS04_RS03085 () | 720835..721719 | - | 885 | WP_159993571.1 | type II secretion system F family protein | - |
| PspS04_RS03090 () | 721738..723015 | - | 1278 | WP_159993573.1 | Putative prophage major tail sheath protein | VF |
| PspS04_RS03095 () | 723012..724202 | - | 1191 | WP_159993575.1 | pilus assembly protein | - |
| PspS04_RS03100 () | 724199..725422 | - | 1224 | WP_159993577.1 | hypothetical protein | VF |
| PspS04_RS03105 () | 725443..726405 | - | 963 | WP_159993579.1 | Flp pilus assembly protein CpaB | - |
| PspS04_RS03110 () | 726738..726941 | + | 204 | WP_159993581.1 | Flp family type IVb pilin | - |
| PspS04_RS03115 () | 726989..727402 | + | 414 | WP_159993583.1 | Regulator of RpoS | VF |
| PspS04_RS03120 () | 727443..727643 | + | 201 | WP_159993585.1 | Flp family type IVb pilin | - |
| PspS04_RS03125 () | 727812..728261 | + | 450 | WP_095170204.1 | DMT family transporter | - |
| PspS04_RS03130 () | 728266..729120 | - | 855 | WP_159993587.1 | acyl dehydratase | - |
| PspS04_RS03135 () | 729123..730475 | - | 1353 | WP_159993589.1 | DNA primase | VF |
| PspS04_RS03140 () | 730594..731871 | + | 1278 | WP_159993591.1 | acetyl-CoA C-acetyltransferase | - |
| PspS04_RS03145 () | 731890..733836 | - | 1947 | WP_159993593.1 | methyl-accepting chemotaxis protein | - |
| PspS04_RS03150 () | 734183..735076 | + | 894 | WP_095170209.1 | serine protein kinase RIO | - |
| PspS04_RS03155 () | 735131..735544 | - | 414 | WP_095170210.1 | Cu(I)-responsive transcriptional regulator | - |
| PspS04_RS03160 () | 735541..737937 | - | 2397 | WP_159993595.1 | heavy metal translocating P-type ATPase | - |
| PspS04_RS03165 () | 738046..738423 | - | 378 | WP_159993597.1 | hypothetical protein | - |
| PspS04_RS03170 () | 738570..738770 | + | 201 | WP_095170213.1 | cation transporter | - |
| PspS04_RS03175 () | 738861..740054 | + | 1194 | WP_159993599.1 | multidrug effflux MFS transporter | - |
| PspS04_RS27485 () | 740056..740226 | - | 171 | WP_174244562.1 | hypothetical protein | - |
| PspS04_RS03180 () | 740373..741386 | - | 1014 | WP_159993601.1 | Multifunctional CCA protein | VF |
| PspS04_RS03185 () | 741504..742433 | + | 930 | WP_159993603.1 | hypothetical protein | VF |
| PspS04_RS03190 () | 742740..743474 | + | 735 | WP_095170217.1 | ArsR family transcriptional regulator | - |
| PspS04_RS03195 () | 743609..744982 | + | 1374 | WP_159993605.1 | MFS transporter | - |
| PspS04_RS03200 () | 745019..745972 | - | 954 | WP_159993607.1 | adenosine deaminase | - |
| PspS04_RS03205 () | 746100..747182 | - | 1083 | WP_095170220.1 | BMP family ABC transporter substrate-binding protein | - |
| PspS04_RS03210 () | 747446..748534 | + | 1089 | WP_159993609.1 | calcium:proton antiporter | - |
| PspS04_RS03215 () | 748568..749926 | - | 1359 | WP_159993611.1 | 8-oxoguanine deaminase | - |
| PspS04_RS03220 () | 750098..750784 | - | 687 | WP_095170222.1 | SDR family oxidoreductase | - |
| PspS04_RS03225 () | 750809..751159 | - | 351 | WP_095170223.1 | MerR family DNA-binding transcriptional regulator | - |
| PspS04_RS03230 () | 751243..751677 | + | 435 | WP_159993613.1 | hypothetical protein | - |
| PspS04_RS03235 () | 751681..752607 | - | 927 | WP_095170225.1 | ABC transporter permease | - |
| PspS04_RS03240 () | 752607..753713 | - | 1107 | WP_095170226.1 | ABC transporter permease | - |
| PspS04_RS03245 () | 753727..755292 | - | 1566 | WP_159993615.1 | 4,5-DOPA dioxygenase extradiol | VF |
| PspS04_RS03250 () | 755845..756426 | - | 582 | WP_159993617.1 | IMPACT family protein | - |
| PspS04_RS03255 () | 756437..757087 | - | 651 | WP_095170229.1 | TetR/AcrR family transcriptional regulator | - |
| PspS04_RS03260 () | 757188..758108 | - | 921 | WP_095170230.1 | LysR family transcriptional regulator | - |
| PspS04_RS03265 () | 758233..759582 | + | 1350 | WP_159993619.1 | aspartate aminotransferase family protein | - |
| PspS04_RS03270 () | 759725..761218 | + | 1494 | WP_159993621.1 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | - |
| PspS04_RS03290 () | 766993..770442 | + | 3450 | WP_159993623.1 | exodeoxyribonuclease V subunit gamma | - |
| PspS04_RS03295 () | 770442..774131 | + | 3690 | WP_159993625.1 | exodeoxyribonuclease V subunit beta | - |
| PspS04_RS03300 () | 774128..776230 | + | 2103 | WP_159993627.1 | exodeoxyribonuclease V subunit alpha | - |
| PspS04_RS03305 () | 776377..776952 | + | 576 | WP_159993629.1 | YfiR family protein | - |
| PspS04_RS03310 () | 776949..778217 | + | 1269 | WP_159993631.1 | Modulator of drug activity B | VF |
| PspS04_RS03315 () | 778222..778725 | + | 504 | WP_095171300.1 | Sensor protein QseC | VF |
| PspS04_RS03320 () | 778722..779669 | - | 948 | WP_095171298.1 | LysR family transcriptional regulator | - |
| PspS04_RS03325 () | 779819..781345 | + | 1527 | WP_095171296.1 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | - |
| PspS04_RS03330 () | 781359..782246 | + | 888 | WP_095171294.1 | 3-hydroxyisobutyrate dehydrogenase | - |
| PspS04_RS03335 () | 782530..782874 | - | 345 | WP_095171292.1 | cupin domain-containing protein | - |
| PspS04_RS03340 () | 782979..783350 | - | 372 | WP_095171290.1 | MerR family transcriptional regulator | - |
| PspS04_RS03345 () | 783406..783981 | - | 576 | WP_095171288.1 | NAD(P)H-dependent oxidoreductase | - |
| PspS04_RS03350 () | 784205..784870 | + | 666 | WP_095171286.1 | arylformamidase | - |
| PspS04_RS03355 () | 784867..785721 | + | 855 | WP_095171285.1 | tryptophan 2,3-dioxygenase | - |
| PspS04_RS03360 () | 785800..787203 | - | 1404 | WP_159993633.1 | amino acid permease | - |
| PspS04_RS03365 () | 787281..788303 | - | 1023 | WP_159993635.1 | anthranilate 1,2-dioxygenase electron transfer component AntC | - |
| PspS04_RS03370 () | 788416..788907 | - | 492 | WP_159993637.1 | anthranilate 1,2-dioxygenase small subunit | - |
| PspS04_RS03375 () | 788910..790298 | - | 1389 | WP_095171278.1 | anthranilate 1,2-dioxygenase large subunit | - |
| PspS04_RS03380 () | 790698..791711 | + | 1014 | WP_095171276.1 | AraC family transcriptional regulator | - |
| PspS04_RS03385 () | 791724..792197 | - | 474 | WP_095171274.1 | Lrp/AsnC family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|