MGE detailed information
MGE type: Conjugative plasmid MGE length: 71276 bp
Accession: NZ_CP019238 Location: 1..71276 Organism: Rhodoferax koreense strain DCY-110 Replicon: plasmid unnamed2
Accession: NZ_CP019238 Location: 1..71276 Organism: Rhodoferax koreense strain DCY-110 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RD110_RS26925 () | 1..329 | - | 329 | WP_157900425.1 | response regulator | - |
| RD110_RS26930 () | 352..1105 | - | 754 | Protein_1 | hypothetical protein | - |
| RD110_RS26935 () | 1114..1563 | - | 450 | WP_076205818.1 | hypothetical protein | - |
| RD110_RS26940 () | 1593..2375 | - | 783 | Protein_3 | hypothetical protein | - |
| RD110_RS26945 () | 2446..3041 | - | 596 | Protein_4 | undecaprenyl-diphosphatase | - |
| RD110_RS26950 () | 3098..3433 | - | 336 | WP_005797945.1 | PepSY domain-containing protein | - |
| RD110_RS26975 () | 5433..5996 | - | 564 | WP_021561445.1 | Tn3 family transposase ISPsy42 | Transposase |
| RD110_RS26980 () | 6232..6552 | - | 321 | WP_021561444.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| RD110_RS26985 () | 6552..6767 | - | 216 | WP_021561443.1 | antitoxin MazE family protein | Antitoxin Detail |
| RD110_RS26990 () | 7152..7811 | + | 660 | WP_011178412.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| RD110_RS26995 () | 7813..8487 | - | 675 | WP_011178411.1 | DNA methylase | - |
| RD110_RS27000 () | 8642..9073 | - | 432 | WP_001665065.1 | Type IV secretion system putative outer membrane lipoprotein/BS1330_II0058 | VF |
| RD110_RS27005 () | 9089..9787 | - | 699 | WP_011114053.1 | conjugal transfer protein TraX | - |
| RD110_RS27010 () | 9787..10053 | - | 267 | WP_010890140.1 | hypothetical protein | - |
| RD110_RS27015 () | 10082..10717 | - | 636 | WP_011114052.1 | hypothetical protein | VF |
| RD110_RS27020 () | 10731..11318 | - | 588 | WP_010890138.1 | conjugal transfer protein TrbM | - |
| RD110_RS27025 () | 11336..13054 | - | 1719 | WP_011114051.1 | P-type conjugative transfer protein TrbL | - |
| RD110_RS27030 () | 13065..13292 | - | 228 | WP_000644148.1 | entry exclusion lipoprotein TrbK | - |
| RD110_RS27035 () | 13302..14066 | - | 765 | WP_010890135.1 | P-type conjugative transfer protein TrbJ | - |
| RD110_RS27040 () | 14087..15508 | - | 1422 | WP_011114050.1 | Type IV secretion system protein virB10 | VF |
| RD110_RS27045 () | 15513..16001 | - | 489 | WP_006122479.1 | conjugal transfer protein TrbH | - |
| RD110_RS27050 () | 16004..16903 | - | 900 | WP_006122480.1 | P-type conjugative transfer protein TrbG | - |
| RD110_RS27055 () | 16921..17703 | - | 783 | WP_006122481.1 | conjugal transfer protein TrbF | - |
| RD110_RS27060 () | 17700..20258 | - | 2559 | WP_011114047.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| RD110_RS27065 () | 20255..20566 | - | 312 | WP_001207961.1 | conjugal transfer protein TrbD | - |
| RD110_RS27070 () | 20570..21034 | - | 465 | WP_011114046.1 | conjugal transfer system pilin TrbC | - |
| RD110_RS27075 () | 21051..22013 | - | 963 | WP_000132020.1 | Type IV secretion system protein PtlH | VF |
| RD110_RS27080 () | 22323..22685 | - | 363 | WP_010890126.1 | transcriptional regulator | - |
| RD110_RS27085 () | 22799..23140 | + | 342 | WP_000019167.1 | single-stranded DNA-binding protein | - |
| RD110_RS27090 () | 23187..24407 | + | 1221 | WP_011114072.1 | replication initiator protein A | - |
| RD110_RS27105 () | 25730..26044 | - | 315 | WP_011117139.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| RD110_RS27110 () | 26041..26310 | - | 270 | WP_001260984.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| RD110_RS27115 () | 26479..26907 | + | 429 | WP_001095942.1 | antirestriction protein | - |
| RD110_RS27120 () | 26959..28164 | + | 1206 | WP_011405605.1 | protein KlcB | - |
| RD110_RS27125 () | 28181..28438 | + | 258 | WP_011117141.1 | transcriptional repressor KorC | - |
| RD110_RS27130 () | 28598..28834 | + | 237 | WP_000041932.1 | stable inheritance protein KleA | - |
| RD110_RS27135 () | 28893..29108 | + | 216 | WP_010890114.1 | DUF2688 domain-containing protein | - |
| RD110_RS27140 () | 29253..29582 | + | 330 | WP_010890113.1 | protein KleE | - |
| RD110_RS27145 () | 29584..30114 | + | 531 | WP_011117143.1 | DUF2761 domain-containing protein | - |
| RD110_RS27150 () | 30228..30530 | + | 303 | WP_010890110.1 | transcriptional regulator KorA | - |
| RD110_RS27155 () | 30527..31291 | + | 765 | WP_000855329.1 | ParA family protein | - |
| RD110_RS27160 () | 31288..32337 | + | 1050 | WP_011114060.1 | ParB/RepB/Spo0J family partition protein | - |
| RD110_RS27165 () | 32517..33548 | + | 1032 | WP_011117145.1 | DNA-binding protein | - |
| RD110_RS27170 () | 33719..34066 | + | 348 | WP_000664557.1 | hypothetical protein | - |
| RD110_RS27175 () | 34095..34748 | + | 654 | WP_000826922.1 | hypothetical protein | - |
| RD110_RS27180 () | 34951..35391 | - | 441 | WP_000718516.1 | conjugal transfer protein TraM | - |
| RD110_RS27185 () | 35391..36116 | - | 726 | WP_001062597.1 | protein TraL | - |
| RD110_RS27190 () | 36116..36514 | - | 399 | WP_001127128.1 | TraK family protein | - |
| RD110_RS27195 () | 36888..37262 | + | 375 | WP_000426567.1 | conjugal transfer transcriptional regulator TraJ | - |
| RD110_RS27200 () | 37297..39537 | + | 2241 | WP_011117146.1 | Protein TraI | Relaxase |
| RD110_RS27205 () | 39534..41447 | + | 1914 | WP_000694765.1 | Conjugal transfer protein TraG | VF |
| RD110_RS27210 () | 41444..41980 | + | 537 | WP_006122512.1 | conjugative transfer signal peptidase TraF | - |
| RD110_RS27215 () | 41992..44055 | + | 2064 | WP_011114056.1 | DNA topoisomerase III | - |
| RD110_RS27220 () | 44077..44466 | + | 390 | WP_006122510.1 | protein TraD | - |
| RD110_RS27225 () | 44470..48816 | + | 4347 | WP_011117147.1 | DUF1738 domain-containing protein | - |
| RD110_RS27235 () | 49107..52022 | + | 2916 | WP_044402914.1 | Tn3 family transposase TnpA_IS1071 | Transposase |
| RD110_RS27240 () | 52166..52759 | + | 594 | Protein_57 | FAD-dependent oxidoreductase | - |
| RD110_RS27245 () | 52868..54415 | + | 1548 | WP_076205821.1 | IS91 family transposase ISPps1 | Transposase |
| RD110_RS27250 () | 54674..55249 | + | 576 | WP_076205829.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| RD110_RS27255 () | 55316..55747 | - | 432 | WP_005797960.1 | EamA family transporter | - |
| RD110_RS27260 () | 55776..57128 | - | 1353 | WP_029310059.1 | Swarming motility regulation sensor protein RssA | VF |
| RD110_RS27265 () | 57104..57769 | - | 666 | WP_005797956.1 | Transcriptional regulatory protein QseB | VF |
| RD110_RS27270 () | 57792..58550 | - | 759 | WP_011875625.1 | membrane protein | - |
| RD110_RS27275 () | 58560..59009 | - | 450 | WP_076205818.1 | hypothetical protein | - |
| RD110_RS27280 () | 59039..59821 | - | 783 | WP_005797951.1 | membrane protein | - |
| RD110_RS27285 () | 59892..60488 | - | 597 | WP_011517526.1 | undecaprenyl-diphosphatase | - |
| RD110_RS27290 () | 60545..60880 | - | 336 | WP_005797945.1 | PepSY domain-containing protein | - |
| RD110_RS27315 () | 62880..63443 | - | 564 | WP_021561445.1 | Tn3 family transposase ISPsy42 | Transposase |
| RD110_RS27320 () | 63679..63999 | - | 321 | WP_021561444.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| RD110_RS27325 () | 63999..64214 | - | 216 | WP_021561443.1 | antitoxin MazE family protein | Antitoxin Detail |
| RD110_RS27330 () | 64599..65258 | + | 660 | WP_011178412.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| RD110_RS27335 () | 65260..65934 | - | 675 | WP_011178411.1 | DNA methylase | - |
| RD110_RS27340 () | 66089..66520 | - | 432 | WP_001665065.1 | Type IV secretion system putative outer membrane lipoprotein/BS1330_II0058 | VF |
| RD110_RS27345 () | 66536..67234 | - | 699 | WP_011114053.1 | conjugal transfer protein TraX | - |
| RD110_RS27350 () | 67234..67500 | - | 267 | WP_010890140.1 | hypothetical protein | - |
| RD110_RS27355 () | 67529..68164 | - | 636 | WP_011114052.1 | hypothetical protein | VF |
| RD110_RS27360 () | 68178..68765 | - | 588 | WP_010890138.1 | conjugal transfer protein TrbM | - |
| RD110_RS27365 () | 68783..70503 | - | 1721 | Protein_79 | P-type conjugative transfer protein TrbL | - |
| RD110_RS27370 () | 70514..70741 | - | 228 | WP_076205824.1 | entry exclusion lipoprotein TrbK | - |
| RD110_RS27375 () | 70751..71276 | - | 526 | WP_076205826.1 | P-type conjugative transfer protein TrbJ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|