MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 39887 bp
Accession: NZ_CP019223 Location: 1..39887 Organism: Mycobacterium intracellulare subsp. chimaera strain CDC 2015-22-71 isolate PA-Patient Replicon: plasmid pDHQP20152271_2
Accession: NZ_CP019223 Location: 1..39887 Organism: Mycobacterium intracellulare subsp. chimaera strain CDC 2015-22-71 isolate PA-Patient Replicon: plasmid pDHQP20152271_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWK49_RS28540 () | 981..1271 | - | 291 | WP_042910035.1 | helix-turn-helix domain-containing protein | - |
| BWK49_RS28545 () | 1491..2180 | + | 690 | WP_046182264.1 | Crp/Fnr family transcriptional regulator | - |
| BWK49_RS28550 () | 2322..3719 | - | 1398 | WP_046182251.1 | IS1380 family transposase ISMav7 | Transposase |
| BWK49_RS28555 () | 4225..4674 | - | 450 | WP_046182252.1 | hypothetical protein | - |
| BWK49_RS28560 () | 4671..5279 | - | 609 | WP_052742708.1 | Chromosome-partitioning ATPase Soj | VF |
| BWK49_RS28565 () | 5377..5637 | + | 261 | WP_046182265.1 | hypothetical protein | - |
| BWK49_RS28570 () | 5692..6051 | + | 360 | WP_052742707.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| BWK49_RS28575 () | 6654..6932 | + | 279 | WP_046182254.1 | hypothetical protein | - |
| BWK49_RS28580 () | 7217..9058 | + | 1842 | WP_046182255.1 | Long-chain-fatty-acid--AMP ligase FadD32 | VF |
| BWK49_RS28585 () | 9141..9461 | - | 321 | WP_046182256.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| BWK49_RS28590 () | 9458..9667 | - | 210 | WP_046182257.1 | antitoxin MazE family protein | - |
| BWK49_RS28595 () | 9772..10353 | + | 582 | WP_046182267.1 | hypothetical protein | - |
| BWK49_RS28600 () | 10495..11724 | + | 1230 | WP_172417610.1 | hypothetical protein | - |
| BWK49_RS28605 () | 12081..12590 | - | 510 | WP_046182258.1 | hypothetical protein | - |
| BWK49_RS28610 () | 13087..13293 | + | 207 | WP_046182259.1 | hypothetical protein | - |
| BWK49_RS28615 () | 13722..14744 | + | 1023 | WP_052742709.1 | plasmid replication protein | - |
| BWK49_RS28620 () | 14863..15117 | - | 255 | WP_142383129.1 | antitoxin VbhA family protein | - |
| BWK49_RS28625 () | 15353..18187 | + | 2835 | WP_054585406.1 | Multifunctional conjugation protein TraI | Relaxase |
| BWK49_RS28630 () | 18332..19129 | + | 798 | WP_046182240.1 | sigma 54 modulation/S30EA ribosomal C-terminal domain-containing protein | - |
| BWK49_RS28635 () | 19198..19587 | + | 390 | Protein_20 | pyridoxamine 5'-phosphate oxidase family protein | - |
| BWK49_RS28640 () | 19816..20100 | + | 285 | WP_082122855.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| BWK49_RS28645 () | 20097..20372 | + | 276 | WP_046182242.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| BWK49_RS28650 () | 20490..20705 | - | 216 | WP_046182243.1 | hypothetical protein | - |
| BWK49_RS28655 () | 20782..21057 | + | 276 | WP_046182244.1 | hypothetical protein | - |
| BWK49_RS28660 () | 21206..21772 | + | 567 | WP_046182262.1 | Tn3 family transposase TnBth3 | Transposase |
| BWK49_RS29990 () | 22248..23000 | + | 753 | WP_172417609.1 | 1-aminocyclopropane-1-carboxylate synthase | - |
| BWK49_RS28675 () | 23234..24190 | + | 957 | WP_082122856.1 | fatty acid desaturase | - |
| BWK49_RS28680 () | 24205..25500 | - | 1296 | WP_046182245.1 | glycosyltransferase | - |
| BWK49_RS28685 () | 25627..35895 | - | 10269 | WP_046182246.1 | Linear gramicidin synthase subunit D | VF |
| BWK49_RS28690 () | 36438..36890 | - | 453 | WP_046182247.1 | transposase | - |
| BWK49_RS28695 () | 36799..37476 | - | 678 | WP_142383130.1 | IS1380 family transposase ISCku8 | Transposase |
| BWK49_RS28705 () | 37711..39144 | + | 1434 | WP_082122853.1 | DUF2156 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|