MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 73024 bp
Accession: NZ_CP018856 Location: 1..73024 Organism: Xanthomonas citri pv. citri strain LH276 Replicon: plasmid pLH276.2
Accession: NZ_CP018856 Location: 1..73024 Organism: Xanthomonas citri pv. citri strain LH276 Replicon: plasmid pLH276.2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BI316_RS24420 () | 28..246 | + | 219 | WP_003491150.1 | antitoxin MazE family protein | Antitoxin Detail |
| BI316_RS24425 () | 243..569 | + | 327 | WP_173667216.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| BI316_RS24430 () | 623..3598 | - | 2976 | WP_011052978.1 | conjugative relaxase | - |
| BI316_RS24435 () | 3612..5186 | - | 1575 | WP_011052977.1 | type IV secretion system DNA-binding domain-containing protein | - |
| BI316_RS26495 () | 5445..5786 | - | 342 | WP_031425612.1 | hypothetical protein | - |
| BI316_RS24445 () | 5985..6335 | - | 351 | WP_015462612.1 | hypothetical protein | - |
| BI316_RS24455 () | 6626..6898 | + | 273 | WP_005934628.1 | hypothetical protein | - |
| BI316_RS26390 () | 7040..7213 | - | 174 | WP_011052974.1 | hypothetical protein | - |
| BI316_RS24460 () | 7213..7608 | - | 396 | WP_011052973.1 | hypothetical protein | - |
| BI316_RS24465 () | 7956..8402 | + | 447 | WP_011052937.1 | hypothetical protein | - |
| BI316_RS24470 () | 8399..9108 | + | 710 | Protein_10 | plasmid stabilization protein | - |
| BI316_RS24475 () | 9157..9510 | + | 354 | WP_039700904.1 | hypothetical protein | - |
| BI316_RS24480 () | 9905..10114 | - | 210 | WP_015462608.1 | helix-turn-helix domain-containing protein | - |
| BI316_RS24485 () | 10111..10419 | - | 309 | WP_015462607.1 | hypothetical protein | - |
| BI316_RS24490 () | 10875..11501 | + | 627 | WP_005931726.1 | ParA family protein | - |
| BI316_RS24495 () | 11498..11821 | + | 324 | WP_005918229.1 | hypothetical protein | - |
| BI316_RS24500 () | 11966..12280 | + | 315 | WP_005918227.1 | hypothetical protein | - |
| BI316_RS24505 () | 12528..13748 | + | 1221 | WP_011052942.1 | replication initiation protein | - |
| BI316_RS24510 () | 14114..17404 | - | 3291 | WP_075150219.1 | TAL effector repeat-containing protein | - |
| BI316_RS24520 () | 18762..19838 | - | 1077 | WP_040107542.1 | hypothetical protein | - |
| BI316_RS24525 () | 19971..21026 | - | 1056 | WP_011052969.1 | DNA-binding protein | - |
| BI316_RS24530 () | 21218..22492 | + | 1275 | WP_011052968.1 | tyrosine-type recombinase/integrase | - |
| BI316_RS24535 () | 22500..25489 | + | 2990 | Protein_22 | Tn3-like element TnXax1 family transposase | - |
| BI316_RS24540 () | 25622..26899 | + | 1278 | WP_011052966.1 | lytic murein transglycosylase | - |
| BI316_RS24545 () | 26942..27286 | + | 345 | WP_075150220.1 | hypothetical protein | - |
| BI316_RS24550 () | 27366..27908 | - | 543 | WP_011052965.1 | hypothetical protein | - |
| BI316_RS24555 () | 27905..28510 | - | 606 | WP_011052963.1 | M48 family metalloprotease | - |
| BI316_RS24560 () | 28507..28956 | - | 450 | WP_015462602.1 | hypothetical protein | - |
| BI316_RS24565 () | 29283..29882 | - | 600 | WP_015462601.1 | hypothetical protein | - |
| BI316_RS24570 () | 30029..30358 | + | 330 | WP_005918642.1 | hypothetical protein | - |
| BI316_RS26145 () | 30408..30614 | + | 207 | WP_011052961.1 | hypothetical protein | - |
| BI316_RS24575 () | 30668..31084 | + | 417 | WP_087962480.1 | transposase | - |
| BI316_RS24580 () | 31215..31397 | - | 183 | Protein_32 | helix-turn-helix domain-containing protein | - |
| BI316_RS24585 () | 31441..32364 | - | 924 | WP_003491216.1 | recombinase family protein | - |
| BI316_RS24590 () | 32578..32817 | + | 240 | WP_003491212.1 | ribbon-helix-helix domain-containing protein | - |
| BI316_RS24595 () | 32817..33236 | + | 420 | WP_003491210.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| BI316_RS24600 () | 33241..36216 | + | 2976 | WP_011345576.1 | Tn3-like element ISXc4 family transposase | - |
| BI316_RS24605 () | 36235..36933 | + | 699 | WP_058958626.1 | UPF0149 family protein | - |
| BI316_RS24610 () | 36978..37124 | + | 147 | Protein_38 | transposase | - |
| BI316_RS24615 () | 37223..41110 | - | 3888 | WP_075150221.1 | TAL effector repeat-containing protein | - |
| BI316_RS26395 () | 41356..41577 | - | 222 | WP_011052944.1 | hypothetical protein | - |
| BI316_RS24635 () | 41867..42403 | - | 537 | WP_015463823.1 | plasmid pRiA4b ORF-3 family protein | - |
| BI316_RS24640 () | 42393..42605 | - | 213 | WP_011052947.1 | hypothetical protein | - |
| BI316_RS26150 () | 42602..42853 | - | 252 | WP_125459571.1 | hypothetical protein | - |
| BI316_RS24645 () | 42876..43208 | - | 333 | WP_015463824.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| BI316_RS24650 () | 43208..43465 | - | 258 | WP_011052949.1 | antitoxin | Antitoxin Detail |
| BI316_RS24655 () | 43671..44273 | + | 603 | WP_011052950.1 | recombinase family protein | - |
| BI316_RS24660 () | 44257..44561 | + | 305 | Protein_47 | Tn3 family transposase | - |
| BI316_RS24665 () | 44728..44934 | - | 207 | Protein_48 | Tn3 family transposase | - |
| BI316_RS24670 () | 44979..45548 | - | 570 | Protein_49 | UPF0149 family protein | - |
| BI316_RS24675 () | 45567..46781 | - | 1215 | WP_011050083.1 | IS4-like element ISXac1 family transposase | - |
| BI316_RS26155 () | 46855..47037 | - | 183 | Protein_51 | UPF0149 family protein | - |
| BI316_RS24690 () | 47056..50031 | - | 2976 | WP_011345576.1 | Tn3-like element ISXc4 family transposase | - |
| BI316_RS24695 () | 50036..50455 | - | 420 | WP_003491210.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| BI316_RS24700 () | 50455..50694 | - | 240 | WP_003491212.1 | ribbon-helix-helix domain-containing protein | - |
| BI316_RS24705 () | 50908..51831 | + | 924 | WP_003491216.1 | recombinase family protein | - |
| BI316_RS24710 () | 51938..52510 | - | 573 | WP_011053004.1 | recombinase family protein | - |
| BI316_RS24715 () | 52701..52961 | + | 261 | WP_011053003.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| BI316_RS24720 () | 52958..53359 | + | 402 | WP_011053002.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| BI316_RS24725 () | 53384..53647 | + | 264 | WP_005917846.1 | hypothetical protein | - |
| BI316_RS24730 () | 53654..54841 | + | 1188 | WP_011053001.1 | zeta toxin family protein | - |
| BI316_RS24735 () | 55121..56347 | + | 1227 | WP_015472949.1 | plasmid replication initiator protein | - |
| BI316_RS24745 () | 57152..57919 | + | 768 | WP_011052998.1 | ParA family protein | - |
| BI316_RS24750 () | 57933..58964 | + | 1032 | WP_011052997.1 | ParB/RepB/Spo0J family partition protein | - |
| BI316_RS24755 () | 59016..59345 | + | 330 | WP_011052996.1 | partition gene repressor | - |
| BI316_RS24760 () | 59349..59585 | + | 237 | WP_015462622.1 | Wgr family protein | - |
| BI316_RS25440 () | 59700..60786 | + | 1087 | Protein_66 | IS3 family transposase | - |
| BI316_RS26400 () | 60951..61166 | - | 216 | WP_155400515.1 | hypothetical protein | - |
| BI316_RS24785 () | 61479..61769 | + | 291 | WP_003490957.1 | hypothetical protein | - |
| BI316_RS24790 () | 61790..62167 | + | 378 | WP_011052992.1 | TrbC/VirB2 family protein | - |
| BI316_RS24795 () | 62164..62463 | + | 300 | WP_040156233.1 | VirB3 family type IV secretion system protein | - |
| BI316_RS24800 () | 62486..65119 | + | 2634 | WP_075150224.1 | type VI secretion protein | - |
| BI316_RS24805 () | 65116..65784 | + | 669 | WP_040156235.1 | hypothetical protein | - |
| BI316_RS24810 () | 65832..66044 | + | 213 | WP_015462617.1 | hypothetical protein | - |
| BI316_RS24815 () | 66037..66417 | + | 381 | WP_015462616.1 | hypothetical protein | - |
| BI316_RS24820 () | 66419..67285 | + | 867 | WP_011052987.1 | type IV secretion system protein | - |
| BI316_RS24825 () | 67282..67956 | + | 675 | WP_011052986.1 | type IV secretion system protein | - |
| BI316_RS24830 () | 67981..68763 | + | 783 | WP_011052985.1 | P-type conjugative transfer protein VirB9 | - |
| BI316_RS24835 () | 68765..69985 | + | 1221 | WP_011052984.1 | TrbI/VirB10 family protein | - |
| BI316_RS24840 () | 69996..71018 | + | 1023 | WP_011052983.1 | P-type DNA transfer ATPase VirB11 | - |
| BI316_RS24845 () | 71029..71907 | + | 879 | WP_011052982.1 | transglycosylase SLT domain-containing protein | - |
| BI316_RS24850 () | 72033..72452 | + | 420 | WP_011052981.1 | hypothetical protein | - |
| BI316_RS24855 () | 72529..72915 | + | 387 | WP_003491149.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|