MGE detailed information
MGE type: Genomic_island MGE length: 9943 bp
Accession: NZ_CP018202 Location: 1233856..1243798 Organism: Pseudomonas syringae pv. actinidiae ICMP 9853 Replicon: chromosome
Accession: NZ_CP018202 Location: 1233856..1243798 Organism: Pseudomonas syringae pv. actinidiae ICMP 9853 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JN853_RS06180 () | 1229286..1229768 | + | 483 | WP_003380358.1 | PAS domain-containing protein | - |
| JN853_RS06185 () | 1229864..1231120 | + | 1257 | WP_003380359.1 | 3-phosphoshikimate 1-carboxyvinyltransferase | - |
| JN853_RS06190 () | 1231185..1231421 | + | 237 | WP_003380360.1 | hypothetical protein | - |
| JN853_RS06195 () | 1231497..1232159 | - | 663 | WP_003380361.1 | ChrR family anti-sigma-E factor | - |
| JN853_RS06200 () | 1232159..1232671 | - | 513 | WP_003380362.1 | sigma-70 family RNA polymerase sigma factor | - |
| JN853_RS06205 () | 1232907..1233095 | - | 189 | WP_003380363.1 | hypothetical protein | - |
| JN853_RS06210 () | 1233094..1233669 | + | 576 | WP_003380364.1 | hypothetical protein | - |
| JN853_RS06215 () | 1233856..1234260 | - | 405 | WP_003380365.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| JN853_RS06220 () | 1234260..1234490 | - | 231 | WP_003380366.1 | antitoxin | Antitoxin Detail |
| JN853_RS06225 () | 1234605..1235486 | - | 882 | WP_003380368.1 | aldose 1-epimerase | - |
| JN853_RS06230 () | 1235461..1236432 | - | 972 | WP_003380370.1 | DMT family transporter | - |
| JN853_RS06235 () | 1236516..1237796 | - | 1281 | WP_003380372.1 | TRAP transporter large permease | - |
| JN853_RS06240 () | 1237797..1238324 | - | 528 | WP_003380373.1 | TRAP transporter small permease | - |
| JN853_RS06245 () | 1238388..1239413 | - | 1026 | WP_003380375.1 | TRAP transporter substrate-binding protein | - |
| JN853_RS06250 () | 1239470..1240354 | - | 885 | WP_003380378.1 | 6-deoxy-6-sulfogluconolactonase | VF |
| JN853_RS06255 () | 1240414..1241238 | - | 825 | WP_003380380.1 | NAD(P)-dependent oxidoreductase | - |
| JN853_RS06260 () | 1241417..1242685 | - | 1269 | WP_017698468.1 | OprD family porin | - |
| JN853_RS06270 () | 1243257..1243532 | - | 276 | WP_003382250.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| JN853_RS06275 () | 1243532..1243798 | - | 267 | WP_003382249.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| JN853_RS06280 () | 1243963..1245885 | - | 1923 | WP_017698469.1 | methyl-accepting chemotaxis protein | - |
| JN853_RS06285 () | 1246244..1248124 | + | 1881 | WP_003382247.1 | methyl-accepting chemotaxis protein | - |
| JN853_RS06290 () | 1248252..1248482 | - | 231 | WP_017698470.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|