MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 107175 bp
Accession: NZ_CP018016 Location: 5189248..5296422 Organism: Kosakonia radicincitans DSM 16656 Replicon: chromosome
Accession: NZ_CP018016 Location: 5189248..5296422 Organism: Kosakonia radicincitans DSM 16656 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Y71_RS24885 () | 5185105..5186406 | + | 1302 | WP_007372703.1 | anaerobic C4-dicarboxylate transporter | - |
| Y71_RS24890 () | 5186492..5186815 | + | 324 | WP_007372702.1 | divalent cation tolerance protein CutA | - |
| Y71_RS24895 () | 5186791..5188494 | + | 1704 | WP_007372701.1 | protein-disulfide reductase DsbD | - |
| Y71_RS24900 () | 5188541..5189116 | + | 576 | WP_007372700.1 | transcriptional regulator | - |
| Y71_RS30210 () | 5189348..5189560 | + | 213 | WP_139114315.1 | hypothetical protein | - |
| Y71_RS24910 () | 5189580..5190545 | - | 966 | WP_063436918.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| Y71_RS24915 () | 5190580..5192028 | - | 1449 | WP_007372696.1 | TraI domain-containing protein | - |
| Y71_RS24920 () | 5192364..5192924 | + | 561 | WP_035943019.1 | hypothetical protein | - |
| Y71_RS24925 () | 5193101..5194108 | + | 1008 | WP_035943016.1 | hypothetical protein | - |
| Y71_RS24930 () | 5194196..5195404 | + | 1209 | WP_007372693.1 | conjugal transfer protein TraF | - |
| Y71_RS24935 () | 5195452..5195988 | + | 537 | WP_050998956.1 | hypothetical protein | - |
| Y71_RS24940 () | 5196004..5196648 | + | 645 | WP_007372691.1 | hypothetical protein | - |
| Y71_RS24945 () | 5196653..5197111 | + | 459 | WP_007372690.1 | hypothetical protein | - |
| Y71_RS24950 () | 5197108..5197518 | + | 411 | WP_007372689.1 | hypothetical protein | - |
| Y71_RS24955 () | 5197521..5198027 | + | 507 | WP_007372688.1 | hypothetical protein | - |
| Y71_RS24960 () | 5198024..5198509 | + | 486 | WP_007372687.1 | hypothetical protein | - |
| Y71_RS24965 () | 5198521..5198931 | + | 411 | WP_050998931.1 | hypothetical protein | - |
| Y71_RS24970 () | 5198979..5199665 | - | 687 | WP_007372685.1 | type I restriction-modification system subunit M | - |
| Y71_RS24975 () | 5199793..5200743 | - | 951 | WP_007372684.1 | DUF1281 domain-containing protein | - |
| Y71_RS24980 () | 5200840..5201820 | - | 981 | WP_007372683.1 | DUF1738 domain-containing protein | - |
| Y71_RS24985 () | 5201893..5202504 | - | 612 | WP_007372682.1 | hypothetical protein | - |
| Y71_RS24990 () | 5202615..5203082 | - | 468 | WP_035943003.1 | hypothetical protein | - |
| Y71_RS24995 () | 5203136..5203432 | - | 297 | WP_007372680.1 | hypothetical protein | - |
| Y71_RS25000 () | 5203569..5203943 | - | 375 | WP_007372679.1 | hypothetical protein | - |
| Y71_RS25005 () | 5204026..5204415 | - | 390 | WP_063436922.1 | hypothetical protein | - |
| Y71_RS25010 () | 5204702..5205154 | - | 453 | WP_139114316.1 | hypothetical protein | - |
| Y71_RS25015 () | 5205190..5206071 | - | 882 | WP_007372676.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| Y71_RS30215 () | 5208403..5208516 | - | 114 | WP_117111543.1 | hypothetical protein | - |
| Y71_RS25030 () | 5208547..5208735 | - | 189 | WP_159427003.1 | plasmid SOS inhibition protein A | - |
| Y71_RS30540 () | 5209051..5209686 | + | 636 | WP_175393100.1 | hypothetical protein | - |
| Y71_RS25035 () | 5209754..5210440 | + | 687 | WP_035943492.1 | 2,3-diphosphoglycerate-dependent phosphoglycerate mutase | - |
| Y71_RS25040 () | 5210765..5212273 | - | 1509 | WP_007372668.1 | DNA mismatch repair protein MutS | - |
| Y71_RS25045 () | 5212270..5213808 | - | 1539 | WP_007372667.1 | DNA mismatch repair protein MutS | - |
| Y71_RS25050 () | 5214070..5214486 | - | 417 | Protein_4879 | universal stress protein | - |
| Y71_RS25055 () | 5214857..5215246 | - | 390 | WP_035942995.1 | fluoride efflux transporter CrcB | - |
| Y71_RS25060 () | 5215328..5216617 | - | 1290 | WP_007372664.1 | phosphopyruvate hydratase | - |
| Y71_RS25065 () | 5216634..5216969 | - | 336 | Protein_4882 | universal stress protein | - |
| Y71_RS25070 () | 5217062..5217454 | + | 393 | WP_007372662.1 | IS66 family transposase ISCfr14 | Transposase |
| Y71_RS25075 () | 5217451..5217798 | + | 348 | WP_031594183.1 | IS66 family transposase ISCfr14 | Transposase |
| Y71_RS25080 () | 5217848..5219386 | + | 1539 | WP_081120870.1 | IS66 family transposase ISSgsp1 | Transposase |
| Y71_RS30225 () | 5219423..5219521 | - | 99 | Protein_4886 | universal stress protein | - |
| Y71_RS25085 () | 5219518..5220426 | - | 909 | WP_007372658.1 | DHH family phosphoesterase | - |
| Y71_RS25090 () | 5220869..5222026 | + | 1158 | WP_074167171.1 | Na+/H+ antiporter NhaA | - |
| Y71_RS25095 () | 5222155..5223813 | - | 1659 | WP_007372656.1 | FAD-dependent oxidoreductase | - |
| Y71_RS25100 () | 5223974..5224324 | + | 351 | WP_035942979.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| Y71_RS25105 () | 5224627..5225103 | - | 477 | WP_007372654.1 | hypothetical protein | VF |
| Y71_RS25110 () | 5225218..5225655 | - | 438 | WP_035942975.1 | PaaI family thioesterase | - |
| Y71_RS25115 () | 5225819..5226280 | - | 462 | WP_007372652.1 | dinitrogenase iron-molybdenum cofactor family protein | - |
| Y71_RS25120 () | 5226255..5226575 | - | 321 | WP_001137910.1 | DUF134 domain-containing protein | - |
| Y71_RS25125 () | 5226862..5227089 | - | 228 | WP_007372650.1 | hypothetical protein | - |
| Y71_RS25130 () | 5227845..5229320 | + | 1476 | WP_007372649.1 | SulP family inorganic anion transporter | - |
| Y71_RS25135 () | 5229338..5230165 | + | 828 | WP_007372648.1 | universal stress protein | - |
| Y71_RS25140 () | 5230247..5230450 | + | 204 | WP_007372647.1 | hypothetical protein | - |
| Y71_RS25145 () | 5230722..5230952 | - | 231 | WP_007372646.1 | thioredoxin family protein | - |
| Y71_RS25150 () | 5230966..5231967 | - | 1002 | WP_007372645.1 | permease | - |
| Y71_RS25155 () | 5232175..5232669 | - | 495 | WP_202815730.1 | ECF RNA polymerase sigma factor SigM | VF |
| Y71_RS25160 () | 5232841..5233023 | - | 183 | WP_007372642.1 | hypothetical protein | - |
| Y71_RS25165 () | 5233143..5233496 | + | 354 | WP_007372641.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| Y71_RS25170 () | 5233553..5234032 | + | 480 | WP_007372640.1 | arsenate reductase ArsC | - |
| Y71_RS25175 () | 5234055..5234420 | + | 366 | WP_007372639.1 | arsenite efflux transporter metallochaperone ArsD | - |
| Y71_RS25180 () | 5234444..5236210 | + | 1767 | WP_007372638.1 | IS21 family transposase ISMex8 | Transposase |
| Y71_RS25185 () | 5236251..5237540 | + | 1290 | WP_007372637.1 | arsenic transporter | - |
| Y71_RS25190 () | 5237598..5238026 | + | 429 | WP_007372636.1 | glutaredoxin-dependent arsenate reductase | - |
| Y71_RS25195 () | 5238099..5238608 | + | 510 | WP_007372635.1 | arsenate reductase ArsC | - |
| Y71_RS25200 () | 5238886..5239245 | + | 360 | WP_202815731.1 | tyrosine-protein phosphatase | - |
| Y71_RS25205 () | 5239544..5240266 | + | 723 | WP_007372633.1 | arsenical resistance protein ArsH | - |
| Y71_RS25210 () | 5240349..5240879 | - | 531 | WP_007372632.1 | GNAT family N-acetyltransferase | - |
| Y71_RS25215 () | 5241210..5241425 | - | 216 | WP_007372631.1 | hypothetical protein | - |
| Y71_RS25220 () | 5241722..5244388 | + | 2667 | WP_007372630.1 | DNA repair ATPase | - |
| Y71_RS25225 () | 5244583..5244873 | + | 291 | WP_035942963.1 | hypothetical protein | - |
| Y71_RS25230 () | 5244917..5246461 | - | 1545 | WP_007372628.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| Y71_RS25235 () | 5246475..5246813 | - | 339 | WP_007372627.1 | hypothetical protein | - |
| Y71_RS25240 () | 5246815..5248239 | - | 1425 | WP_007372626.1 | integrating conjugative element protein | - |
| Y71_RS25245 () | 5248251..5249222 | - | 972 | WP_007372625.1 | TIGR03756 family integrating conjugative element protein | - |
| Y71_RS25250 () | 5249219..5249626 | - | 408 | WP_007372624.1 | TIGR03757 family integrating conjugative element protein | - |
| Y71_RS25255 () | 5249794..5252220 | - | 2427 | WP_007372623.1 | ATP-binding protein | - |
| Y71_RS25260 () | 5252348..5252581 | + | 234 | WP_007372622.1 | PerC family transcriptional regulator | - |
| Y71_RS25265 () | 5252743..5253147 | - | 405 | WP_007372621.1 | hypothetical protein | - |
| Y71_RS25270 () | 5253159..5255957 | - | 2799 | WP_007372620.1 | conjugative transfer ATPase | - |
| Y71_RS25275 () | 5255957..5256376 | - | 420 | WP_035943490.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| Y71_RS25280 () | 5256418..5257929 | - | 1512 | WP_007372618.1 | TIGR03752 family integrating conjugative element protein | - |
| Y71_RS25285 () | 5257926..5258834 | - | 909 | WP_007372617.1 | TIGR03749 family integrating conjugative element protein | - |
| Y71_RS25290 () | 5258834..5259478 | - | 645 | WP_007372616.1 | TIGR03746 family integrating conjugative element protein | - |
| Y71_RS25295 () | 5259475..5259849 | - | 375 | WP_007372615.1 | TIGR03750 family conjugal transfer protein | - |
| Y71_RS25300 () | 5259859..5260224 | - | 366 | WP_007372614.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| Y71_RS25305 () | 5260238..5260483 | - | 246 | WP_007372613.1 | TIGR03758 family integrating conjugative element protein | - |
| Y71_RS25310 () | 5260474..5260791 | - | 318 | WP_007372612.1 | hypothetical protein | - |
| Y71_RS25315 () | 5261045..5262109 | + | 1065 | WP_007372611.1 | HNH endonuclease | - |
| Y71_RS25320 () | 5262119..5262625 | + | 507 | WP_035943488.1 | YrhA family protein | - |
| Y71_RS25325 () | 5262786..5263547 | - | 762 | WP_007372609.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| Y71_RS25330 () | 5263528..5265645 | - | 2118 | WP_007372608.1 | type IV conjugative transfer system coupling protein TraD | - |
| Y71_RS25335 () | 5265642..5266418 | - | 777 | WP_007372607.1 | hypothetical protein | - |
| Y71_RS25340 () | 5266422..5266796 | - | 375 | WP_007372606.1 | hypothetical protein | - |
| Y71_RS25345 () | 5266811..5267455 | - | 645 | WP_007372605.1 | restriction endonuclease | - |
| Y71_RS25350 () | 5267455..5267985 | - | 531 | WP_007372604.1 | integrating conjugative element protein | - |
| Y71_RS25355 () | 5267982..5268593 | - | 612 | WP_007372603.1 | hypothetical protein | VF |
| Y71_RS25360 () | 5268572..5269285 | - | 714 | WP_007372602.1 | TIGR03759 family integrating conjugative element protein | - |
| Y71_RS25365 () | 5269303..5270160 | - | 858 | WP_007372601.1 | hypothetical protein | - |
| Y71_RS25370 () | 5270279..5271439 | - | 1161 | WP_007372600.1 | IS91 family transposase ISShvi3 | Transposase |
| Y71_RS25380 () | 5272463..5273581 | - | 1119 | Protein_4945 | hypothetical protein | VF |
| Y71_RS25385 () | 5273587..5274243 | - | 657 | WP_007372595.1 | hypothetical protein | VF |
| Y71_RS25390 () | 5274240..5274719 | - | 480 | WP_007372594.1 | hypothetical protein | VF |
| Y71_RS25395 () | 5274724..5275320 | - | 597 | WP_007372593.1 | hypothetical protein | VF |
| Y71_RS25400 () | 5275330..5276445 | - | 1116 | WP_007372592.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| Y71_RS25405 () | 5276435..5278009 | - | 1575 | WP_007372591.1 | Type II secretion system protein E | VF |
| Y71_RS25410 () | 5278017..5278514 | - | 498 | WP_007372590.1 | hypothetical protein | VF |
| Y71_RS25415 () | 5278501..5279781 | - | 1281 | WP_071532028.1 | hypothetical protein | VF |
| Y71_RS25420 () | 5279784..5281457 | - | 1674 | WP_007372588.1 | Outer membrane lipoprotein BfpB | VF |
| Y71_RS25425 () | 5281477..5281920 | - | 444 | WP_007372587.1 | hypothetical protein | VF |
| Y71_RS25430 () | 5281922..5283208 | - | 1287 | WP_007372586.1 | hypothetical protein | VF |
| Y71_RS25435 () | 5283441..5283923 | - | 483 | WP_007372585.1 | GNAT family N-acetyltransferase | Toxin Detail |
| Y71_RS25440 () | 5283914..5284198 | - | 285 | WP_007372584.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| Y71_RS25445 () | 5284354..5284854 | - | 501 | WP_007372583.1 | single-stranded DNA-binding protein | - |
| Y71_RS25450 () | 5284930..5285421 | - | 492 | WP_007372582.1 | DUF3577 domain-containing protein | - |
| Y71_RS25455 () | 5286054..5288066 | - | 2013 | WP_007372580.1 | DNA topoisomerase III | - |
| Y71_RS25460 () | 5288084..5288806 | - | 723 | WP_007372579.1 | TIGR03761 family integrating conjugative element protein | - |
| Y71_RS25465 () | 5289053..5290291 | - | 1239 | WP_007372578.1 | helix-turn-helix domain-containing protein | - |
| Y71_RS25470 () | 5290370..5290600 | - | 231 | WP_007372576.1 | hypothetical protein | - |
| Y71_RS25475 () | 5290600..5291199 | - | 600 | WP_007372575.1 | DUF2857 domain-containing protein | - |
| Y71_RS25480 () | 5291284..5292027 | - | 744 | WP_007372574.1 | DUF2786 domain-containing protein | - |
| Y71_RS25485 () | 5292017..5292274 | - | 258 | WP_007372573.1 | TraR/DksA C4-type zinc finger protein | - |
| Y71_RS25490 () | 5292267..5293973 | - | 1707 | WP_007372572.1 | ParB family protein | - |
| Y71_RS25495 () | 5293970..5295334 | - | 1365 | WP_007372571.1 | replicative DNA helicase | - |
| Y71_RS25500 () | 5295334..5296218 | - | 885 | WP_035943483.1 | Tyrosine-protein kinase CpsD | VF |
| Y71_RS25510 () | 5297444..5299142 | - | 1699 | Protein_4970 | LysM peptidoglycan-binding domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|