MGE detailed information
MGE type: Genomic_island MGE length: 21228 bp
Accession: NZ_CP017669 Location: 5251815..5273042 Organism: Escherichia coli strain PA20 Replicon: chromosome
Accession: NZ_CP017669 Location: 5251815..5273042 Organism: Escherichia coli strain PA20 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AU473_RS27060 () | 5247541..5248083 | + | 543 | WP_000934391.1 | hypothetical protein | - |
| AU473_RS27070 () | 5248376..5250526 | + | 2151 | WP_001298933.1 | pyruvate/proton symporter BtsT | - |
| AU473_RS27075 () | 5250576..5250779 | + | 204 | WP_000467859.1 | YbdD/YjiX family protein | - |
| AU473_RS27080 () | 5250790..5251746 | + | 957 | WP_001297640.1 | GTPase | - |
| AU473_RS27085 () | 5251815..5253173 | - | 1359 | WP_001304004.1 | DUF262 domain-containing protein | - |
| AU473_RS27090 () | 5253182..5253466 | - | 285 | WP_001304005.1 | DUF262 domain-containing protein | - |
| AU473_RS27095 () | 5253744..5256176 | + | 2433 | WP_000819018.1 | DEAD/DEAH box helicase family protein | - |
| AU473_RS27100 () | 5256243..5257712 | + | 1470 | WP_001302468.1 | type I restriction-modification system subunit M | - |
| AU473_RS27105 () | 5257712..5259466 | + | 1755 | WP_000110082.1 | restriction endonuclease subunit S | - |
| - () | 5259616..5259692 | - | 77 | NuclAT_15 | - | Antitoxin Detail |
| - () | 5259616..5259692 | - | 77 | NuclAT_15 | - | Antitoxin Detail |
| - () | 5259616..5259692 | - | 77 | NuclAT_15 | - | Antitoxin Detail |
| - () | 5259616..5259692 | - | 77 | NuclAT_15 | - | Antitoxin Detail |
| - () | 5259616..5259692 | - | 77 | NuclAT_16 | - | Antitoxin Detail |
| - () | 5259616..5259692 | - | 77 | NuclAT_16 | - | Antitoxin Detail |
| - () | 5259616..5259692 | - | 77 | NuclAT_16 | - | Antitoxin Detail |
| - () | 5259616..5259692 | - | 77 | NuclAT_16 | - | Antitoxin Detail |
| AU473_RS27110 () | 5259687..5260028 | + | 342 | WP_000132630.1 | endoribonuclease SymE | Toxin Detail |
| AU473_RS31130 () | 5260075..5261238 | - | 1164 | WP_001304006.1 | DUF1524 domain-containing protein | - |
| AU473_RS27120 () | 5261286..5262167 | - | 882 | WP_001304007.1 | DUF262 domain-containing protein | - |
| AU473_RS27125 () | 5262264..5262428 | - | 165 | WP_000394274.1 | DUF1127 domain-containing protein | - |
| AU473_RS27130 () | 5262605..5264017 | + | 1413 | WP_000199295.1 | PLP-dependent aminotransferase family protein | - |
| AU473_RS32520 () | 5264260..5264460 | - | 201 | WP_001310455.1 | hypothetical protein | - |
| AU473_RS27135 () | 5264465..5265217 | - | 753 | Protein_5145 | Recombination-promoting nuclease RpnD | VF |
| AU473_RS27140 () | 5265684..5266916 | + | 1233 | WP_001136983.1 | multidrug efflux MFS transporter MdtM | - |
| AU473_RS27145 () | 5266957..5268228 | + | 1272 | WP_001037406.1 | DUF445 domain-containing protein | - |
| AU473_RS27150 () | 5268344..5269495 | + | 1152 | WP_001302771.1 | 2-hydroxyacyl-CoA dehydratase subunit D | - |
| AU473_RS27155 () | 5269505..5270272 | + | 768 | WP_000222489.1 | hypothetical protein | - |
| AU473_RS27160 () | 5270269..5270535 | + | 267 | WP_000657677.1 | DUF3343 domain-containing protein | - |
| AU473_RS27165 () | 5270847..5273042 | + | 2196 | WP_000535069.1 | hypothetical protein | VF |
| AU473_RS27170 () | 5273308..5274150 | + | 843 | WP_000746206.1 | YjiK family protein | - |
| AU473_RS27175 () | 5274218..5275396 | + | 1179 | WP_001089435.1 | MFS transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli O157:H7 str. EDL933 | NC_002655 | 5456776..5475497 | 0.003 | |||
| Escherichia coli O157:H7 str. Sakai | NC_002695 | 5426911..5445631 | 0.003 |