MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 93595 bp
Accession: NZ_CP017620 Location: 1..93595 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain 22792 Replicon: plasmid unnamed1
Accession: NZ_CP017620 Location: 1..93595 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain 22792 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BKC12_RS00010 () | 4987..5726 | + | 740 | Protein_1 | conjugal transfer pilus acetylase TraX | - |
| BKC12_RS00015 () | 5781..6344 | + | 564 | WP_071953345.1 | fertility inhibition protein FinO | - |
| BKC12_RS00020 () | 6459..6743 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| BKC12_RS00025 () | 6756..6911 | + | 156 | WP_000983042.1 | hypothetical protein | - |
| BKC12_RS00030 () | 7077..7519 | + | 443 | Protein_5 | phospholipase | - |
| BKC12_RS00035 () | 7698..7964 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| BKC12_RS00045 () | 8214..8291 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| BKC12_RS00050 () | 8272..9153 | + | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| BKC12_RS00060 () | 10013..10234 | + | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| BKC12_RS00065 () | 10331..11089 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| BKC12_RS00070 () | 11356..11913 | - | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| BKC12_RS00075 () | 12003..12902 | - | 900 | WP_010999938.1 | YjiK family protein | - |
| BKC12_RS25770 () | 12899..13045 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| BKC12_RS00080 () | 13035..13688 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| BKC12_RS00085 () | 13933..14283 | - | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| BKC12_RS00090 () | 14268..14480 | - | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| BKC12_RS00095 () | 14912..15787 | - | 876 | WP_014343944.1 | hypothetical protein | - |
| BKC12_RS00100 () | 16040..16597 | - | 558 | WP_010999940.1 | membrane protein | - |
| BKC12_RS00105 () | 16612..17304 | - | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| BKC12_RS00110 () | 17297..19705 | - | 2409 | WP_071953346.1 | outer membrane usher protein PefC | - |
| BKC12_RS00115 () | 19933..20451 | - | 519 | WP_000748205.1 | major pilin PefA | - |
| BKC12_RS00120 () | 20726..21028 | - | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| BKC12_RS00130 () | 21747..22128 | + | 382 | Protein_23 | YgiW/YdeI family stress tolerance OB fold protein | - |
| BKC12_RS25450 () | 22405..22741 | + | 337 | Protein_24 | site-specific integrase | - |
| BKC12_RS00140 () | 23000..23989 | - | 990 | Protein_25 | RepB family plasmid replication initiator protein | - |
| BKC12_RS25020 () | 24483..24779 | - | 297 | WP_001687482.1 | hypothetical protein | - |
| BKC12_RS00155 () | 25263..25784 | - | 522 | WP_010999942.1 | hypothetical protein | - |
| BKC12_RS00160 () | 26460..26678 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| BKC12_RS00165 () | 26680..26985 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| BKC12_RS00170 () | 26987..27277 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| BKC12_RS00175 () | 27274..27795 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| BKC12_RS00180 () | 27830..28612 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| BKC12_RS00185 () | 28621..29294 | + | 674 | Protein_33 | EAL domain-containing protein | - |
| BKC12_RS00190 () | 29298..29807 | + | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| BKC12_RS00195 () | 29801..30286 | + | 486 | WP_000905606.1 | membrane protein | - |
| BKC12_RS25455 () | 30563..30850 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| BKC12_RS00200 () | 31006..31566 | + | 561 | WP_071953347.1 | inverse autotransporter beta domain-containing protein | - |
| BKC12_RS00205 () | 31633..31983 | - | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| BKC12_RS00210 () | 32040..32464 | + | 425 | Protein_39 | IS200/IS605 family transposase | - |
| BKC12_RS00215 () | 32591..33241 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| BKC12_RS00220 () | 33502..34227 | - | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| BKC12_RS00225 () | 34508..36277 | - | 1770 | WP_014344527.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| BKC12_RS25775 () | 36329..36496 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| BKC12_RS00230 () | 36459..37226 | - | 768 | WP_001526990.1 | virulence protein SpvA | - |
| BKC12_RS00235 () | 37400..37564 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| BKC12_RS00240 () | 37738..38631 | - | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| BKC12_RS00245 () | 39240..40277 | + | 1038 | WP_001121399.1 | IS630 family transposase | - |
| BKC12_RS00250 () | 40466..41491 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| BKC12_RS00255 () | 41424..43088 | - | 1665 | WP_000098783.1 | IS481 family transposase | - |
| BKC12_RS00260 () | 43072..43632 | - | 561 | WP_001240331.1 | recombinase family protein | - |
| BKC12_RS00265 () | 43839..44579 | - | 741 | WP_001541566.1 | carbonic anhydrase | - |
| BKC12_RS00270 () | 45234..45722 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| BKC12_RS00275 () | 45981..47096 | + | 1116 | WP_071953348.1 | DNA-binding protein | - |
| BKC12_RS00280 () | 47182..47598 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| BKC12_RS00285 () | 47782..48117 | + | 336 | WP_001527010.1 | hypothetical protein | - |
| BKC12_RS00290 () | 48174..48740 | + | 567 | WP_001541562.1 | DUF2913 family protein | - |
| BKC12_RS00295 () | 48772..49713 | - | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| BKC12_RS00300 () | 50128..51333 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| BKC12_RS00305 () | 51333..52307 | + | 975 | WP_071953349.1 | ParB/RepB/Spo0J family partition protein | - |
| BKC12_RS00310 () | 52389..53663 | - | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| BKC12_RS00315 () | 53663..54085 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| BKC12_RS25025 () | 54596..55066 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| BKC12_RS00325 () | 55059..55415 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| BKC12_RS00335 () | 55797..56462 | + | 666 | WP_071953350.1 | DNA methylase | - |
| BKC12_RS00340 () | 56462..56683 | + | 222 | WP_001109588.1 | hypothetical protein | - |
| BKC12_RS00345 () | 56739..57152 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| BKC12_RS00350 () | 57224..57969 | + | 746 | Protein_67 | hypothetical protein | - |
| BKC12_RS00355 () | 58146..58452 | + | 307 | Protein_68 | DUF1472 domain-containing protein | - |
| BKC12_RS00360 () | 58465..58899 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| BKC12_RS00365 () | 58966..59400 | + | 435 | WP_071953351.1 | DUF1380 family protein | - |
| BKC12_RS00370 () | 59636..59959 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| BKC12_RS25470 () | 59923..60138 | + | 216 | WP_138858474.1 | hypothetical protein | - |
| BKC12_RS00390 () | 60732..61250 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| BKC12_RS00395 () | 61305..61547 | + | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| BKC12_RS00400 () | 61616..63613 | + | 1998 | WP_071953352.1 | ParB/RepB/Spo0J family partition protein | - |
| BKC12_RS00405 () | 63653..64087 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| BKC12_RS00410 () | 64084..64821 | + | 738 | WP_071953353.1 | plasmid SOS inhibition protein A | - |
| BKC12_RS25780 () | 65070..65228 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| BKC12_RS25785 () | 65331..66149 | + | 819 | Protein_79 | DUF945 domain-containing protein | - |
| BKC12_RS00430 () | 66455..66925 | - | 471 | WP_001526856.1 | transglycosylase SLT domain-containing protein | - |
| BKC12_RS00440 () | 67340..67720 | + | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| BKC12_RS00445 () | 67913..68598 | + | 686 | Protein_82 | PAS domain-containing protein | - |
| BKC12_RS00450 () | 68691..68918 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| BKC12_RS00455 () | 68960..69322 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| BKC12_RS00460 () | 69337..69648 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| BKC12_RS00465 () | 69670..70236 | + | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| BKC12_RS00470 () | 70223..70969 | + | 747 | WP_071953354.1 | type-F conjugative transfer system secretin TraK | - |
| BKC12_RS00475 () | 70969..72390 | + | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| BKC12_RS00480 () | 72380..72976 | + | 597 | WP_000527896.1 | conjugal transfer protein TraP | - |
| BKC12_RS00485 () | 72954..73199 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| BKC12_RS00490 () | 73196..73712 | + | 517 | Protein_91 | type IV conjugative transfer system lipoprotein TraV | - |
| BKC12_RS00495 () | 73847..74068 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| BKC12_RS00500 () | 74061..74528 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| BKC12_RS00505 () | 74645..74908 | + | 264 | WP_001239256.1 | hypothetical protein | - |
| BKC12_RS00510 () | 74924..77582 | + | 2659 | Protein_95 | type IV secretion system protein TraC | - |
| BKC12_RS25480 () | 77557..77922 | + | 366 | Protein_96 | type-F conjugative transfer system protein TrbI | - |
| BKC12_RS00515 () | 77925..78365 | + | 441 | Protein_97 | type-F conjugative transfer system protein TraW | - |
| BKC12_RS00520 () | 78362..79354 | + | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| BKC12_RS00525 () | 79373..79681 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| BKC12_RS00530 () | 79666..80304 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| BKC12_RS00535 () | 80341..80760 | + | 420 | WP_001229397.1 | HNH endonuclease | - |
| BKC12_RS00540 () | 80757..82583 | + | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| BKC12_RS00545 () | 82594..82809 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| BKC12_RS00550 () | 82821..83570 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| BKC12_RS00555 () | 83784..84077 | + | 294 | WP_071953355.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| BKC12_RS00560 () | 84064..84612 | + | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| BKC12_RS00565 () | 84602..85984 | + | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| BKC12_RS00570 () | 85981..88803 | + | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| BKC12_RS00575 () | 88819..89313 | + | 495 | WP_010999946.1 | entry exclusion protein | - |
| BKC12_RS00580 () | 89349..90080 | + | 732 | WP_071953356.1 | complement resistance protein TraT | - |
| BKC12_RS00585 () | 90457..92604 | + | 2148 | Protein_111 | type IV conjugative transfer system coupling protein TraD | - |
| BKC12_RS00590 () | 92613..93011 | - | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | - |
| BKC12_RS00595 () | 93011..93238 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|