MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 64038 bp
Accession: NZ_CP017476 Location: 2457377..2521414 Organism: Hydrogenophaga crassostreae strain LPB0072 Replicon: chromosome
Accession: NZ_CP017476 Location: 2457377..2521414 Organism: Hydrogenophaga crassostreae strain LPB0072 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPB072_RS11310 () | 2452582..2453181 | + | 600 | WP_066089628.1 | DNA repair protein RadC | - |
| LPB072_RS11315 () | 2453292..2453651 | + | 360 | WP_066089631.1 | hypothetical protein | - |
| LPB072_RS11320 () | 2453728..2454333 | + | 606 | WP_066089634.1 | hypothetical protein | - |
| LPB072_RS11325 () | 2454462..2456837 | + | 2376 | WP_157559290.1 | DEAD/DEAH box helicase | - |
| LPB072_RS23145 () | 2456915..2457907 | + | 993 | WP_082876876.1 | Tyrosine recombinase XerD | VF |
| LPB072_RS11335 () | 2458543..2459073 | + | 531 | WP_197508947.1 | hypothetical protein | - |
| LPB072_RS11350 () | 2460786..2462018 | + | 1233 | WP_157559291.1 | TolC family protein | - |
| LPB072_RS11355 () | 2462015..2463640 | + | 1626 | WP_066089648.1 | efflux RND transporter periplasmic adaptor subunit | - |
| LPB072_RS11360 () | 2463637..2466807 | + | 3171 | WP_066089651.1 | efflux RND transporter permease subunit | - |
| LPB072_RS11365 () | 2466926..2468026 | - | 1101 | WP_066089655.1 | cytochrome c oxidase assembly protein | - |
| LPB072_RS11370 () | 2468077..2468625 | - | 549 | WP_066089658.1 | metal-dependent hydrolase | - |
| LPB072_RS11375 () | 2468630..2470588 | - | 1959 | WP_066089661.1 | protein-disulfide reductase DsbD | - |
| LPB072_RS11380 () | 2470585..2471337 | - | 753 | WP_066089664.1 | DsbC family protein | - |
| LPB072_RS11385 () | 2471341..2472951 | - | 1611 | WP_066090837.1 | multicopper oxidase domain-containing protein | - |
| LPB072_RS23440 () | 2472991..2473137 | - | 147 | WP_157559292.1 | hypothetical protein | - |
| LPB072_RS11390 () | 2473130..2474041 | - | 912 | WP_066089668.1 | glycosyl hydrolase | - |
| LPB072_RS11395 () | 2474312..2474740 | - | 429 | WP_066089671.1 | hypothetical protein | - |
| LPB072_RS11400 () | 2474996..2476684 | - | 1689 | WP_066089673.1 | mercury(II) reductase | - |
| LPB072_RS11405 () | 2476681..2476938 | - | 258 | WP_066089676.1 | mercury resistance system transport protein MerF | - |
| LPB072_RS11410 () | 2476935..2477219 | - | 285 | WP_066089679.1 | mercury resistance system periplasmic binding protein MerP | - |
| LPB072_RS11415 () | 2477232..2477582 | - | 351 | WP_066089681.1 | mercuric ion transporter MerT | - |
| LPB072_RS11420 () | 2477757..2478161 | + | 405 | WP_066089684.1 | Hg(II)-responsive transcriptional regulator | - |
| LPB072_RS11425 () | 2478452..2478859 | + | 408 | WP_082876878.1 | c-type cytochrome | - |
| LPB072_RS11430 () | 2479038..2479466 | - | 429 | WP_066089691.1 | cytochrome c | - |
| LPB072_RS11435 () | 2479646..2480155 | - | 510 | WP_066089695.1 | cupredoxin family protein | - |
| LPB072_RS11440 () | 2480228..2481286 | - | 1059 | WP_082876879.1 | copper resistance protein B | - |
| LPB072_RS11445 () | 2481315..2483174 | - | 1860 | WP_066089698.1 | copper resistance system multicopper oxidase | - |
| LPB072_RS11450 () | 2483413..2483679 | + | 267 | WP_066089702.1 | IS3 family transposase ISWsu1 | Transposase |
| LPB072_RS11455 () | 2483715..2484293 | + | 579 | WP_157559293.1 | IS3 family transposase ISD1 | Transposase |
| LPB072_RS11460 () | 2484465..2485745 | - | 1281 | WP_066089704.1 | IS110 family transposase ISMex12 | Transposase |
| LPB072_RS11465 () | 2485851..2486114 | + | 264 | WP_157694138.1 | IS3 family transposase ISD1 | Transposase |
| LPB072_RS11470 () | 2486576..2486857 | + | 282 | WP_082876882.1 | CopK family periplasmic copper-binding protein | - |
| LPB072_RS11475 () | 2486918..2488300 | - | 1383 | WP_066089707.1 | heavy metal sensor histidine kinase | - |
| LPB072_RS11480 () | 2488297..2488983 | - | 687 | WP_066089710.1 | Transcriptional activator protein CopR | VF |
| LPB072_RS23150 () | 2489255..2489491 | + | 237 | WP_082876883.1 | DUF2933 domain-containing protein | - |
| LPB072_RS11485 () | 2489498..2491882 | + | 2385 | WP_082876884.1 | heavy metal translocating P-type ATPase | - |
| LPB072_RS11490 () | 2492426..2492824 | - | 399 | WP_197508815.1 | isoprenylcysteine carboxylmethyltransferase family protein | - |
| LPB072_RS11495 () | 2493293..2494327 | - | 1035 | WP_157694139.1 | hypothetical protein | VF |
| LPB072_RS11500 () | 2494572..2495900 | - | 1329 | WP_066089721.1 | Murein DD-endopeptidase MepM | VF |
| LPB072_RS11505 () | 2495938..2496576 | - | 639 | WP_197508816.1 | SCO family protein | - |
| LPB072_RS11510 () | 2496578..2497234 | - | 657 | WP_066089724.1 | thioredoxin domain-containing protein | - |
| LPB072_RS11515 () | 2497231..2497647 | - | 417 | WP_066089727.1 | disulfide bond formation protein B | - |
| LPB072_RS11520 () | 2497644..2498168 | - | 525 | WP_066089730.1 | Lipoprotein signal peptidase | VF |
| LPB072_RS11525 () | 2498665..2499105 | - | 441 | WP_082876886.1 | DUF3703 domain-containing protein | - |
| LPB072_RS11530 () | 2499020..2499676 | - | 657 | WP_066089738.1 | cation diffusion facilitator family transporter | - |
| LPB072_RS11535 () | 2499756..2500178 | + | 423 | WP_066089740.1 | Cd(II)/Pb(II)-responsive transcriptional regulator | - |
| LPB072_RS11540 () | 2500714..2501712 | - | 999 | WP_066089742.1 | hypothetical protein | - |
| LPB072_RS11545 () | 2501801..2502721 | - | 921 | WP_082876887.1 | DUF3262 family protein | - |
| LPB072_RS11550 () | 2502724..2503575 | - | 852 | WP_066089745.1 | hypothetical protein | - |
| LPB072_RS11555 () | 2503589..2504344 | - | 756 | WP_066089748.1 | DsbC family protein | - |
| LPB072_RS11560 () | 2504382..2504894 | - | 513 | WP_082876888.1 | PH domain-containing protein | - |
| LPB072_RS11565 () | 2504916..2505218 | - | 303 | WP_066089751.1 | hypothetical protein | - |
| LPB072_RS11570 () | 2505413..2505847 | - | 435 | WP_066089754.1 | hypothetical protein | - |
| LPB072_RS11575 () | 2506028..2506810 | - | 783 | WP_066089759.1 | SprT-like domain-containing protein | - |
| LPB072_RS11580 () | 2506900..2507157 | + | 258 | WP_066089762.1 | plasmid stability protein stbC | Antitoxin Detail |
| LPB072_RS11585 () | 2507154..2507579 | + | 426 | WP_066089765.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LPB072_RS11590 () | 2507586..2507807 | + | 222 | WP_066089768.1 | hypothetical protein | - |
| LPB072_RS23445 () | 2507884..2508102 | + | 219 | WP_157559295.1 | hypothetical protein | - |
| LPB072_RS11595 () | 2508120..2509709 | - | 1590 | WP_066089770.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| LPB072_RS11600 () | 2509767..2510159 | - | 393 | WP_157559296.1 | hypothetical protein | - |
| LPB072_RS11605 () | 2510156..2511538 | - | 1383 | WP_082876889.1 | integrating conjugative element protein | - |
| LPB072_RS11610 () | 2511553..2512833 | - | 1281 | WP_197508817.1 | TraU family protein | - |
| LPB072_RS11615 () | 2512854..2513333 | - | 480 | WP_066089778.1 | DUF1525 domain-containing protein | - |
| LPB072_RS11620 () | 2513335..2513829 | - | 495 | WP_066089781.1 | DUF1525 domain-containing protein | - |
| LPB072_RS11625 () | 2513826..2514086 | - | 261 | WP_066089785.1 | hypothetical protein | - |
| LPB072_RS11630 () | 2514076..2517039 | - | 2964 | WP_082876941.1 | conjugative transfer ATPase | - |
| LPB072_RS11635 () | 2517095..2517619 | - | 525 | WP_082876891.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| LPB072_RS11640 () | 2517606..2519036 | - | 1431 | WP_066089791.1 | TIGR03752 family integrating conjugative element protein | - |
| LPB072_RS11645 () | 2519059..2519823 | - | 765 | WP_096349074.1 | TIGR03749 family integrating conjugative element protein | - |
| LPB072_RS11650 () | 2520156..2520944 | - | 789 | WP_066089797.1 | TIGR03746 family integrating conjugative element protein | - |
| LPB072_RS11655 () | 2520941..2521414 | - | 474 | WP_096349061.1 | TIGR03750 family conjugal transfer protein | - |
| LPB072_RS11660 () | 2521436..2521837 | - | 402 | WP_082876892.1 | DUF2976 domain-containing protein | - |
| LPB072_RS11665 () | 2521908..2522141 | - | 234 | WP_157694140.1 | DUF3262 family protein | - |
| LPB072_RS11670 () | 2522161..2522451 | - | 291 | WP_066090859.1 | RAQPRD family integrative conjugative element protein | - |
| LPB072_RS11675 () | 2522558..2523316 | - | 759 | WP_066089803.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| LPB072_RS11680 () | 2523313..2525586 | - | 2274 | WP_066089806.1 | type IV conjugative transfer system coupling protein TraD | - |
| LPB072_RS23155 () | 2525597..2526115 | - | 519 | WP_082876894.1 | integrating conjugative element protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|