MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 168543 bp
Accession: NZ_CP017427 Location: 1..168543 Organism: Methylobacterium sp. XJLW Replicon: plasmid unnamed1
Accession: NZ_CP017427 Location: 1..168543 Organism: Methylobacterium sp. XJLW Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A3862_RS30130 () | 572..1147 | + | 576 | WP_124263047.1 | hypothetical protein | - |
| A3862_RS30135 () | 1180..1539 | - | 360 | WP_111474403.1 | hypothetical protein | - |
| A3862_RS30140 () | 1623..2051 | + | 429 | WP_111474404.1 | hypothetical protein | - |
| A3862_RS30145 () | 2345..2593 | + | 249 | WP_111474405.1 | hypothetical protein | - |
| A3862_RS30150 () | 2993..3505 | + | 513 | WP_111474406.1 | hypothetical protein | - |
| A3862_RS30155 () | 3568..4500 | - | 933 | WP_111474407.1 | DUF4238 domain-containing protein | - |
| A3862_RS30160 () | 4529..4786 | - | 258 | WP_124263048.1 | hypothetical protein | - |
| A3862_RS30165 () | 4830..5267 | - | 438 | WP_111474409.1 | type II toxin-antitoxin system MqsA family antitoxin | - |
| A3862_RS30170 () | 5260..5574 | - | 315 | WP_111474410.1 | type II toxin-antitoxin system MqsR family toxin | - |
| A3862_RS30175 () | 5816..7216 | - | 1401 | WP_163006266.1 | IS30 family transposase | - |
| A3862_RS30180 () | 7176..7895 | - | 720 | WP_111474411.1 | TIGR02391 family protein | - |
| A3862_RS30185 () | 7882..8433 | - | 552 | WP_111474412.1 | hypothetical protein | - |
| A3862_RS30190 () | 8884..9537 | - | 654 | Protein_13 | Tn3 family transposase | - |
| A3862_RS30195 () | 9638..10906 | + | 1269 | WP_009867550.1 | IS256-like element ISMex3 family transposase | - |
| A3862_RS30200 () | 10940..11377 | - | 438 | Protein_15 | EAL domain-containing protein | - |
| A3862_RS30205 () | 11543..11884 | - | 342 | WP_111474413.1 | hypothetical protein | - |
| A3862_RS30210 () | 11927..13411 | - | 1485 | WP_111474414.1 | PAS domain S-box protein | - |
| A3862_RS30215 () | 13638..14117 | - | 480 | WP_111474415.1 | PAS domain-containing protein | - |
| A3862_RS30220 () | 14343..15185 | - | 843 | WP_003596510.1 | IS21-like element ISMdi7 family helper ATPase IstB | - |
| A3862_RS30225 () | 15182..16680 | - | 1499 | Protein_20 | IS21-like element ISMdi7 family transposase | - |
| A3862_RS31755 () | 17068..17229 | + | 162 | WP_163006275.1 | hypothetical protein | - |
| A3862_RS30230 () | 17709..18770 | + | 1062 | WP_111474416.1 | tyrosine-type recombinase/integrase | - |
| A3862_RS30240 () | 19327..21651 | + | 2325 | WP_111474418.1 | hypothetical protein | - |
| A3862_RS30245 () | 21648..28169 | + | 6522 | WP_111474419.1 | AAA family ATPase | - |
| A3862_RS30250 () | 28355..29056 | - | 702 | WP_111474420.1 | hypothetical protein | - |
| A3862_RS30255 () | 29053..32436 | - | 3384 | WP_111474421.1 | hypothetical protein | - |
| A3862_RS30260 () | 32433..33335 | - | 903 | WP_111474422.1 | hypothetical protein | - |
| A3862_RS30265 () | 33332..35641 | - | 2310 | WP_164706444.1 | DEAD/DEAH box helicase | - |
| A3862_RS30270 () | 36161..36745 | - | 585 | WP_111474424.1 | VUT family protein | - |
| A3862_RS30275 () | 36742..37485 | - | 744 | WP_111474425.1 | 7-cyano-7-deazaguanine synthase QueC | - |
| A3862_RS30280 () | 37478..37858 | - | 381 | WP_111474495.1 | 6-carboxytetrahydropterin synthase QueD | - |
| A3862_RS30285 () | 37864..38496 | - | 633 | WP_111474426.1 | 7-carboxy-7-deazaguanine synthase | - |
| A3862_RS30290 () | 38563..39711 | - | 1149 | WP_111474496.1 | DGQHR domain-containing protein | - |
| A3862_RS30295 () | 39792..41087 | - | 1296 | WP_111474427.1 | hypothetical protein | - |
| A3862_RS30300 () | 41087..42307 | - | 1221 | WP_111474428.1 | DGQHR domain-containing protein | - |
| A3862_RS30305 () | 42304..42966 | - | 663 | WP_124263050.1 | hypothetical protein | - |
| A3862_RS30310 () | 43825..44400 | + | 576 | WP_111474430.1 | recombinase family protein | - |
| A3862_RS31290 () | 44346..45029 | - | 684 | WP_124263051.1 | hypothetical protein | - |
| A3862_RS30315 () | 45603..46034 | - | 432 | WP_111474431.1 | hypothetical protein | - |
| A3862_RS30320 () | 46244..46786 | + | 543 | WP_111474432.1 | hypothetical protein | - |
| A3862_RS30325 () | 46783..47169 | + | 387 | WP_111474497.1 | hypothetical protein | - |
| A3862_RS30330 () | 47239..47496 | + | 258 | WP_111474433.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
| A3862_RS30335 () | 47498..47920 | + | 423 | WP_111474434.1 | hypothetical protein | - |
| A3862_RS30340 () | 48084..49006 | + | 923 | Protein_44 | HEPN domain-containing protein | - |
| A3862_RS31760 () | 49354..49524 | + | 171 | WP_164706445.1 | hypothetical protein | - |
| A3862_RS30350 () | 49658..49900 | + | 243 | WP_111474435.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| A3862_RS30355 () | 49904..50305 | + | 402 | WP_111474436.1 | type II toxin-antitoxin system VapC family toxin | - |
| A3862_RS30360 () | 50718..51077 | + | 360 | WP_111474437.1 | DUF736 domain-containing protein | - |
| A3862_RS30365 () | 51177..51797 | - | 621 | WP_111474438.1 | amino acid transporter | - |
| A3862_RS30370 () | 52086..53099 | + | 1014 | WP_164706446.1 | DUF1738 domain-containing protein | - |
| A3862_RS30375 () | 53099..53879 | + | 781 | Protein_51 | hypothetical protein | - |
| A3862_RS30380 () | 53904..54449 | - | 546 | WP_111474439.1 | hypothetical protein | - |
| A3862_RS31765 () | 54547..54705 | - | 159 | WP_164706447.1 | hypothetical protein | - |
| A3862_RS30385 () | 54772..55044 | - | 273 | WP_111474440.1 | hypothetical protein | - |
| A3862_RS30390 () | 55537..56005 | + | 469 | Protein_55 | hypothetical protein | - |
| A3862_RS30395 () | 56111..56431 | - | 321 | WP_205782378.1 | hypothetical protein | - |
| A3862_RS30400 () | 56431..58563 | - | 2133 | WP_205782380.1 | TonB-dependent receptor | - |
| A3862_RS30405 () | 59159..59485 | - | 327 | WP_111474441.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| A3862_RS30410 () | 59482..59739 | - | 258 | WP_111474442.1 | antitoxin | Antitoxin Detail |
| A3862_RS30415 () | 60022..62271 | + | 2250 | WP_111474443.1 | ParB/RepB/Spo0J family partition protein | - |
| A3862_RS30420 () | 62250..62810 | - | 561 | WP_111474444.1 | MucR family transcriptional regulator | - |
| A3862_RS30425 () | 63045..67403 | + | 4359 | WP_111474445.1 | strawberry notch family protein | - |
| A3862_RS30430 () | 67429..68487 | + | 1059 | WP_111474446.1 | toprim domain-containing protein | - |
| A3862_RS30435 () | 68833..69762 | + | 930 | WP_111474447.1 | DUF2493 domain-containing protein | - |
| A3862_RS30440 () | 70102..70338 | - | 237 | WP_111474448.1 | hypothetical protein | - |
| A3862_RS30445 () | 70387..70668 | - | 282 | WP_111474449.1 | hypothetical protein | - |
| A3862_RS30450 () | 70810..71277 | - | 468 | WP_111474450.1 | hypothetical protein | - |
| A3862_RS30455 () | 71308..71529 | - | 222 | WP_111474451.1 | hypothetical protein | - |
| A3862_RS31770 () | 72099..72272 | + | 174 | WP_164706448.1 | hypothetical protein | - |
| A3862_RS30460 () | 72546..74492 | - | 1947 | Protein_70 | conjugal transfer protein TraG | - |
| A3862_RS30465 () | 74489..74686 | - | 198 | WP_111474452.1 | conjugal transfer protein TraD | - |
| A3862_RS30470 () | 74670..74948 | - | 279 | WP_111474453.1 | conjugal transfer protein TraC | - |
| A3862_RS30475 () | 75419..79156 | + | 3738 | WP_111474454.1 | Ti-type conjugative transfer relaxase TraA | - |
| A3862_RS30480 () | 79314..79664 | + | 351 | WP_111474455.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| A3862_RS30485 () | 79661..80278 | + | 618 | WP_111474456.1 | hypothetical protein | - |
| A3862_RS30490 () | 80508..80795 | + | 288 | WP_111474457.1 | hypothetical protein | - |
| A3862_RS30495 () | 80792..82090 | + | 1299 | WP_111474458.1 | Fic family protein | - |
| A3862_RS30500 () | 82087..83001 | + | 915 | WP_111474459.1 | hypothetical protein | - |
| A3862_RS30505 () | 83182..83436 | - | 255 | WP_124263052.1 | hypothetical protein | - |
| A3862_RS30510 () | 83448..83744 | - | 297 | WP_111474461.1 | helix-turn-helix domain-containing protein | - |
| A3862_RS30515 () | 83816..84187 | - | 372 | WP_111474462.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| A3862_RS30520 () | 84670..85086 | - | 417 | WP_111474463.1 | hypothetical protein | - |
| A3862_RS30525 () | 85083..88070 | - | 2988 | WP_111474464.1 | hypothetical protein | - |
| A3862_RS30530 () | 88067..88537 | - | 471 | WP_111474465.1 | hypothetical protein | - |
| A3862_RS30535 () | 88549..88803 | - | 255 | WP_012606221.1 | hypothetical protein | - |
| A3862_RS30540 () | 88800..90083 | - | 1284 | WP_111474466.1 | DotG/IcmE/VirB10 family protein | - |
| A3862_RS30545 () | 90095..91282 | - | 1188 | WP_111474467.1 | type IV secretion protein IcmK | - |
| A3862_RS30550 () | 91279..91935 | - | 657 | WP_111474468.1 | DotI/IcmL family type IV secretion protein | - |
| A3862_RS30555 () | 91932..92207 | - | 276 | WP_111474469.1 | hypothetical protein | - |
| A3862_RS30560 () | 92209..92985 | - | 777 | WP_111474470.1 | hypothetical protein | - |
| A3862_RS30565 () | 93567..94133 | + | 567 | WP_111474471.1 | hypothetical protein | - |
| A3862_RS30570 () | 94150..94671 | - | 522 | WP_111474472.1 | hypothetical protein | - |
| A3862_RS31775 () | 94771..94911 | + | 141 | WP_164706449.1 | hypothetical protein | - |
| A3862_RS30575 () | 94915..96048 | + | 1134 | WP_111474473.1 | type IV secretory system conjugative DNA transfer family protein | - |
| A3862_RS30580 () | 96052..97233 | + | 1182 | WP_111474474.1 | Flp pilus assembly complex ATPase component TadA | - |
| A3862_RS30585 () | 97202..97852 | + | 651 | WP_111474499.1 | DUF882 domain-containing protein | - |
| A3862_RS30590 () | 97849..98094 | + | 246 | WP_111474475.1 | hypothetical protein | - |
| A3862_RS30595 () | 98079..98756 | + | 678 | WP_111474476.1 | hypothetical protein | - |
| A3862_RS31295 () | 98753..99169 | + | 417 | WP_124263053.1 | hypothetical protein | - |
| A3862_RS30600 () | 99259..100116 | + | 858 | WP_111474477.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| A3862_RS30605 () | 100113..100877 | + | 765 | WP_111474478.1 | hypothetical protein | - |
| A3862_RS30610 () | 100874..101896 | + | 1023 | WP_111474479.1 | hypothetical protein | - |
| A3862_RS30615 () | 101893..102879 | + | 987 | WP_111474480.1 | hypothetical protein | - |
| A3862_RS30620 () | 102888..105143 | + | 2256 | WP_012778764.1 | DotA/TraY family protein | - |
| A3862_RS30625 () | 105147..106469 | + | 1323 | WP_012778765.1 | hypothetical protein | - |
| A3862_RS30630 () | 106573..107094 | + | 522 | Protein_106 | helix-turn-helix domain-containing protein | - |
| A3862_RS30635 () | 107213..108439 | + | 1227 | WP_041359064.1 | plasmid partitioning protein RepA | - |
| A3862_RS30640 () | 108436..109440 | + | 1005 | WP_041359132.1 | plasmid partitioning protein RepB | - |
| A3862_RS30645 () | 109645..110856 | + | 1212 | WP_012778768.1 | replication initiation protein RepC | - |
| A3862_RS30650 () | 111744..112106 | + | 363 | WP_012778769.1 | hypothetical protein | - |
| A3862_RS30655 () | 112534..113421 | + | 888 | WP_017980906.1 | hypothetical protein | - |
| A3862_RS30665 () | 114064..114927 | - | 864 | WP_111474481.1 | IS21-like element helper ATPase IstB | - |
| A3862_RS30670 () | 114929..116180 | - | 1252 | Protein_113 | IS21 family transposase | - |
| A3862_RS30675 () | 116349..116612 | - | 264 | WP_024310576.1 | DksA/TraR family C4-type zinc finger protein | - |
| A3862_RS30680 () | 116740..117636 | - | 897 | WP_017980832.1 | bestrophin family protein | - |
| A3862_RS30685 () | 117704..117820 | - | 117 | WP_017980833.1 | DUF2474 domain-containing protein | - |
| A3862_RS30690 () | 117820..118830 | - | 1011 | WP_017980834.1 | cytochrome d ubiquinol oxidase subunit II | - |
| A3862_RS30695 () | 118827..120239 | - | 1413 | WP_169863546.1 | cytochrome ubiquinol oxidase subunit I | - |
| A3862_RS30700 () | 120564..120854 | + | 291 | WP_017980836.1 | metal/formaldehyde-sensitive transcriptional repressor | - |
| A3862_RS30705 () | 121120..122040 | + | 921 | WP_017980837.1 | LysR family transcriptional regulator | - |
| A3862_RS30710 () | 122085..122759 | - | 675 | WP_024310570.1 | SDR family oxidoreductase | - |
| A3862_RS30715 () | 123159..124373 | + | 1215 | WP_088412030.1 | glutathione-independent formaldehyde dehydrogenase | - |
| A3862_RS30720 () | 124718..125827 | + | 1110 | WP_017980840.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| A3862_RS30725 () | 125879..126277 | + | 399 | WP_017980841.1 | VOC family protein | - |
| A3862_RS30730 () | 126425..127255 | + | 831 | WP_017980842.1 | S-formylglutathione hydrolase | - |
| A3862_RS30735 () | 127276..128607 | + | 1332 | WP_111474482.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| A3862_RS30740 () | 128604..129926 | + | 1323 | WP_021233328.1 | DUF3422 family protein | - |
| A3862_RS30745 () | 129989..131965 | + | 1977 | WP_017980845.1 | excinuclease ABC subunit UvrB | - |
| A3862_RS30750 () | 131988..134642 | + | 2655 | WP_017980846.1 | excinuclease ABC subunit UvrA | - |
| A3862_RS30755 () | 134787..135872 | + | 1086 | WP_026151879.1 | Dyp-type peroxidase | - |
| A3862_RS30760 () | 135865..136686 | + | 822 | WP_017980848.1 | bacteriocin family protein | - |
| A3862_RS30765 () | 136739..137320 | + | 582 | WP_017980849.1 | PRC-barrel domain-containing protein | - |
| A3862_RS30770 () | 137332..137628 | - | 297 | WP_021233331.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| A3862_RS30775 () | 137625..137903 | - | 279 | WP_021233332.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| A3862_RS30780 () | 138020..139939 | - | 1920 | WP_017980852.1 | type IV secretory system conjugative DNA transfer family protein | - |
| A3862_RS30785 () | 139961..140971 | - | 1011 | WP_111474483.1 | P-type DNA transfer ATPase VirB11 | - |
| A3862_RS30790 () | 140975..142264 | - | 1290 | WP_017980854.1 | type IV secretion system protein VirB10 | - |
| A3862_RS30795 () | 142266..143273 | - | 1008 | WP_017980855.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| A3862_RS30800 () | 143275..143793 | - | 519 | WP_111474500.1 | type IV secretion system protein | - |
| A3862_RS30805 () | 143885..144637 | - | 753 | WP_043768345.1 | IS6-like element ISMex25 family transposase | - |
| A3862_RS30810 () | 144719..144943 | - | 225 | Protein_141 | aldo/keto reductase | - |
| A3862_RS30815 () | 145015..145578 | - | 564 | WP_111474484.1 | type 1 glutamine amidotransferase | - |
| A3862_RS30820 () | 145629..145958 | - | 330 | WP_111474485.1 | zinc ribbon domain-containing protein | - |
| A3862_RS30825 () | 146043..147197 | - | 1155 | WP_111474486.1 | glutathione-independent formaldehyde dehydrogenase | - |
| A3862_RS30830 () | 147234..147536 | - | 303 | WP_111474487.1 | antibiotic biosynthesis monooxygenase | - |
| A3862_RS30835 () | 147771..148954 | + | 1184 | WP_111474488.1 | IS3 family transposase | - |
| A3862_RS30840 () | 148987..149351 | - | 365 | Protein_147 | transposase | - |
| A3862_RS31780 () | 149523..149678 | + | 156 | WP_164706443.1 | hypothetical protein | - |
| A3862_RS30845 () | 149743..150867 | + | 1125 | WP_111474489.1 | alkene reductase | - |
| A3862_RS30850 () | 150956..151927 | + | 972 | WP_111474490.1 | LLM class oxidoreductase | - |
| A3862_RS30855 () | 152147..152452 | + | 306 | WP_066419976.1 | helix-turn-helix domain-containing protein | - |
| A3862_RS30860 () | 152575..152859 | - | 285 | WP_111474491.1 | DUF3363 domain-containing protein | - |
| A3862_RS30865 () | 153026..154231 | - | 1206 | WP_111474492.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| A3862_RS30870 () | 154376..155035 | - | 660 | WP_111474501.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| A3862_RS30875 () | 155102..155854 | + | 753 | WP_111474493.1 | IS6 family transposase | - |
| A3862_RS30880 () | 156031..156843 | - | 813 | WP_015823814.1 | c-type cytochrome | - |
| A3862_RS30885 () | 156840..158454 | - | 1615 | Protein_157 | cbb3-type cytochrome c oxidase subunit I | - |
| A3862_RS30890 () | 158444..159006 | - | 563 | Protein_158 | cytochrome C oxidase subunit II | - |
| A3862_RS31785 () | 159019..159195 | - | 177 | WP_012779162.1 | hypothetical protein | - |
| A3862_RS30895 () | 159200..160454 | - | 1255 | Protein_160 | cytochrome c | - |
| A3862_RS30900 () | 160466..161065 | - | 600 | WP_015823818.1 | c-type cytochrome | - |
| A3862_RS30905 () | 161553..162241 | + | 689 | Protein_162 | Crp/Fnr family transcriptional regulator | - |
| A3862_RS30910 () | 162442..162677 | + | 236 | Protein_163 | hypothetical protein | - |
| A3862_RS30915 () | 162663..162935 | - | 273 | WP_041358075.1 | hypothetical protein | - |
| A3862_RS30920 () | 162960..163232 | - | 273 | WP_015823822.1 | hypothetical protein | - |
| A3862_RS30925 () | 163213..164312 | + | 1100 | WP_085985478.1 | IS3-like element ISMex11 family transposase | - |
| A3862_RS30930 () | 164623..164763 | + | 141 | Protein_167 | IS5/IS1182 family transposase | - |
| A3862_RS30935 () | 164870..166150 | - | 1281 | WP_015823824.1 | SulP family inorganic anion transporter | - |
| A3862_RS30940 () | 166451..167948 | + | 1498 | Protein_169 | IS21-like element ISMdi7 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|