MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 76088 bp
Accession: NZ_CP017008 Location: 1..76088 Organism: Pseudomonas syringae pv. actinidiae strain ICMP 20586 Replicon: plasmid pPsa20586
Accession: NZ_CP017008 Location: 1..76088 Organism: Pseudomonas syringae pv. actinidiae strain ICMP 20586 Replicon: plasmid pPsa20586
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PsaNZ45_RS32170 () | 231..479 | + | 249 | WP_017685122.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| PsaNZ45_RS32175 () | 495..845 | + | 351 | WP_017685123.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PsaNZ45_RS32180 () | 977..1561 | - | 585 | Protein_2 | Oxygen regulatory protein NreC | VF |
| PsaNZ45_RS32195 () | 3268..3573 | + | 306 | WP_017706770.1 | hypothetical protein | VF |
| PsaNZ45_RS32200 () | 3563..4372 | + | 810 | WP_017684942.1 | P-type conjugative transfer protein VirB9 | - |
| PsaNZ45_RS32205 () | 4359..5729 | + | 1371 | WP_017684943.1 | Type IV secretion system protein virB10 | VF |
| PsaNZ45_RS32210 () | 5739..6770 | + | 1032 | WP_017684944.1 | Type IV secretion system protein VirB11 | VF |
| PsaNZ45_RS32215 () | 6780..7136 | + | 357 | WP_017684945.1 | hypothetical protein | - |
| PsaNZ45_RS32220 () | 7385..8008 | + | 624 | WP_017684946.1 | glycoside hydrolase family 25 protein | - |
| PsaNZ45_RS32225 () | 8454..8684 | + | 231 | WP_017684963.1 | hypothetical protein | - |
| PsaNZ45_RS32230 () | 8684..10336 | + | 1653 | WP_017684962.1 | type IV secretory system conjugative DNA transfer family protein | - |
| PsaNZ45_RS32235 () | 10377..10739 | + | 363 | WP_015060690.1 | IncN plasmid killer protein | - |
| PsaNZ45_RS32240 () | 10767..12665 | + | 1899 | WP_017684961.1 | DNA topoisomerase III | - |
| PsaNZ45_RS32245 () | 12688..15717 | - | 3030 | WP_017682807.1 | Tn3 family transposase ISPsy42 | Transposase |
| PsaNZ45_RS32250 () | 15746..16318 | - | 573 | WP_004666660.1 | Tn3 family transposase ISPsy42 | Transposase |
| PsaNZ45_RS32255 () | 16498..16749 | + | 252 | WP_003108276.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| PsaNZ45_RS32260 () | 16746..17141 | + | 396 | WP_004666661.1 | type II toxin-antitoxin system VapC family toxin | - |
| PsaNZ45_RS32270 () | 17302..17679 | - | 378 | WP_004666662.1 | hypothetical protein | - |
| PsaNZ45_RS32275 () | 17747..17983 | - | 237 | Protein_19 | Tn3 family transposase ISPsy42 | Transposase |
| PsaNZ45_RS32290 () | 18442..20073 | - | 1632 | WP_020358614.1 | Methyl-accepting chemotaxis protein McpQ | VF |
| PsaNZ45_RS32295 () | 20247..20792 | + | 546 | Protein_21 | IS5 family transposase ISPsy19 | Transposase |
| PsaNZ45_RS32310 () | 21823..22200 | + | 378 | WP_003344294.1 | hypothetical protein | - |
| PsaNZ45_RS32315 () | 22247..23083 | + | 837 | WP_017684524.1 | DUF945 domain-containing protein | - |
| PsaNZ45_RS32320 () | 23151..23351 | + | 201 | WP_017684525.1 | hypothetical protein | - |
| PsaNZ45_RS32325 () | 23417..23695 | - | 279 | WP_017684526.1 | hypothetical protein | - |
| PsaNZ45_RS32335 () | 23993..24337 | - | 345 | WP_017684528.1 | hypothetical protein | - |
| PsaNZ45_RS32340 () | 24583..24912 | + | 330 | WP_003344297.1 | ribbon-helix-helix protein, CopG family | - |
| PsaNZ45_RS32345 () | 24923..26878 | + | 1956 | WP_017684529.1 | Protein TraI | Relaxase |
| PsaNZ45_RS32355 () | 27173..28015 | - | 843 | WP_005734710.1 | Transcriptional activator protein LasR | VF |
| PsaNZ45_RS32360 () | 28073..28666 | - | 594 | WP_005734709.1 | aminodeoxychorismate/anthranilate synthase component II | - |
| PsaNZ45_RS32365 () | 28663..30129 | - | 1467 | WP_005734708.1 | 2-amino-4-deoxychorismate synthase | VF |
| PsaNZ45_RS32370 () | 30759..32111 | + | 1353 | WP_017684531.1 | phenylacetate--CoA ligase family protein | - |
| PsaNZ45_RS32375 () | 32118..32663 | + | 546 | WP_005734707.1 | hypothetical protein | - |
| PsaNZ45_RS32380 () | 32665..33348 | + | 684 | WP_003319174.1 | iron-containing redox enzyme family protein | - |
| PsaNZ45_RS32385 () | 33352..33969 | + | 618 | WP_017699540.1 | flavodoxin family protein | - |
| PsaNZ45_RS32390 () | 33972..34880 | + | 909 | WP_017685046.1 | EamA family transporter | - |
| PsaNZ45_RS32395 () | 34867..35817 | + | 951 | WP_017685047.1 | alpha/beta fold hydrolase | - |
| PsaNZ45_RS32410 () | 36794..38086 | - | 1293 | WP_017685048.1 | glycoside hydrolase family 68 protein | - |
| PsaNZ45_RS32420 () | 38354..38974 | + | 621 | WP_005769724.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PsaNZ45_RS32425 () | 38993..39289 | - | 297 | WP_017685207.1 | hypothetical protein | - |
| PsaNZ45_RS32440 () | 39940..43314 | + | 3375 | WP_017684689.1 | hypothetical protein | VF |
| PsaNZ45_RS32445 () | 43342..43764 | + | 423 | WP_017684688.1 | hypothetical protein | - |
| PsaNZ45_RS32450 () | 43785..44348 | + | 564 | WP_010206573.1 | hypothetical protein | - |
| PsaNZ45_RS32455 () | 44536..44964 | + | 429 | WP_017684687.1 | GntR family transcriptional regulator | - |
| PsaNZ45_RS32460 () | 45044..45271 | + | 228 | WP_017684686.1 | hypothetical protein | - |
| PsaNZ45_RS32465 () | 45669..46982 | + | 1314 | WP_017684685.1 | replication initiation protein | - |
| PsaNZ45_RS32470 () | 47194..47508 | + | 315 | WP_017684684.1 | HU family DNA-binding protein | - |
| PsaNZ45_RS32480 () | 48102..48620 | + | 519 | WP_017684683.1 | DUF4113 domain-containing protein | - |
| PsaNZ45_RS35150 () | 48632..48853 | + | 222 | WP_017684682.1 | hypothetical protein | - |
| PsaNZ45_RS32490 () | 49307..49744 | + | 438 | WP_074291445.1 | DUF4113 domain-containing protein | - |
| PsaNZ45_RS32495 () | 50320..50571 | - | 252 | WP_020316509.1 | ribbon-helix-helix protein, CopG family | - |
| PsaNZ45_RS32500 () | 50668..51324 | - | 657 | WP_017685030.1 | AAA family ATPase | - |
| PsaNZ45_RS34915 () | 51440..51595 | + | 156 | WP_153303633.1 | hypothetical protein | - |
| PsaNZ45_RS32510 () | 52159..52707 | - | 549 | WP_017685033.1 | hypothetical protein | - |
| PsaNZ45_RS32515 () | 52804..53265 | + | 462 | WP_020365478.1 | SOS response-associated peptidase family protein | - |
| PsaNZ45_RS32520 () | 53535..54308 | - | 774 | Protein_56 | type III effector | - |
| PsaNZ45_RS32525 () | 54412..55014 | - | 603 | Protein_57 | type III effector | - |
| PsaNZ45_RS32530 () | 55389..57833 | + | 2445 | WP_017685035.1 | hypothetical protein | - |
| PsaNZ45_RS32535 () | 57977..58201 | - | 225 | Protein_59 | transposase | - |
| PsaNZ45_RS32540 () | 58942..59187 | + | 246 | WP_017685036.1 | hypothetical protein | - |
| PsaNZ45_RS32550 () | 59742..60158 | + | 417 | WP_017685037.1 | hypothetical protein | - |
| PsaNZ45_RS32555 () | 60196..60426 | + | 231 | WP_017685038.1 | hypothetical protein | - |
| PsaNZ45_RS32560 () | 60516..61055 | + | 540 | WP_017685039.1 | hypothetical protein | - |
| PsaNZ45_RS32575 () | 63283..63462 | + | 180 | WP_017685223.1 | hypothetical protein | - |
| PsaNZ45_RS32580 () | 63731..63955 | + | 225 | WP_017699623.1 | carbon storage regulator | - |
| PsaNZ45_RS32585 () | 63985..64398 | + | 414 | WP_017685173.1 | TraR/DksA family transcriptional regulator | - |
| PsaNZ45_RS32590 () | 64436..64657 | + | 222 | WP_004666801.1 | hypothetical protein | - |
| PsaNZ45_RS32600 () | 64983..65603 | - | 621 | WP_005769724.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PsaNZ45_RS32605 () | 65991..66401 | + | 411 | Protein_70 | ParA family protein | - |
| PsaNZ45_RS32610 () | 66454..67635 | - | 1182 | Protein_71 | IS3 family transposase ISPsy28 | Transposase |
| PsaNZ45_RS32620 () | 67928..68467 | - | 540 | WP_017685167.1 | hypothetical protein | - |
| PsaNZ45_RS32625 () | 68864..69118 | - | 255 | WP_003381350.1 | hypothetical protein | - |
| PsaNZ45_RS32630 () | 69145..69405 | - | 261 | Protein_74 | hypothetical protein | - |
| PsaNZ45_RS32640 () | 69467..70644 | + | 1178 | WP_164706461.1 | IS3 family transposase ISPsy28 | Transposase |
| PsaNZ45_RS32645 () | 70666..71004 | - | 339 | WP_017685230.1 | hypothetical protein | - |
| PsaNZ45_RS34920 () | 71141..71428 | - | 288 | WP_153303634.1 | hypothetical protein | - |
| PsaNZ45_RS32650 () | 71510..71902 | - | 393 | WP_017685201.1 | hypothetical protein | - |
| PsaNZ45_RS32655 () | 72080..73147 | + | 1068 | WP_074556923.1 | IS630 family transposase ISPsy32 | Transposase |
| PsaNZ45_RS32660 () | 73345..73707 | - | 363 | Protein_80 | IS91 family transposase ISMno23 | Transposase |
| PsaNZ45_RS33710 () | 73757..75336 | + | 1580 | WP_085991147.1 | IS3 family transposase ISPsy31 | Transposase |
| PsaNZ45_RS32675 () | 75373..75978 | - | 606 | Protein_82 | site-specific integrase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|