MGE detailed information
MGE type: Genomic_island MGE length: 9929 bp
Accession: NZ_CP016928 Location: 550444..560372 Organism: Dickeya solani RNS 08.23.3.1.A Replicon: chromosome
Accession: NZ_CP016928 Location: 550444..560372 Organism: Dickeya solani RNS 08.23.3.1.A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D083_RS02310 () | 545582..545980 | + | 399 | WP_022633731.1 | cupin domain-containing protein | - |
| D083_RS02315 () | 546136..547170 | - | 1035 | WP_022633732.1 | harpin HrpZ family protein | - |
| D083_RS02320 () | 547331..547741 | - | 411 | WP_022633733.1 | hypothetical protein | - |
| D083_RS02325 () | 547738..547926 | - | 189 | WP_022633734.1 | hypothetical protein | - |
| D083_RS02330 () | 547961..550030 | - | 2070 | WP_023637836.1 | type III secretion system outer membrane ring subunit SctC | - |
| D083_RS02335 () | 550023..550457 | - | 435 | WP_022633737.1 | hypothetical protein | - |
| D083_RS02340 () | 550444..550671 | - | 228 | WP_022633738.1 | type III secretion protein HrpF | - |
| D083_RS02345 () | 550956..551354 | - | 399 | WP_026594479.1 | type II toxin-antitoxin system YafO family toxin | Toxin Detail |
| D083_RS02350 () | 551357..551650 | - | 294 | WP_022633740.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| D083_RS02355 () | 551868..552917 | - | 1050 | WP_022633741.1 | hypothetical protein | - |
| D083_RS02360 () | 553457..554617 | + | 1161 | WP_022633742.1 | alpha/beta fold hydrolase | - |
| D083_RS02365 () | 554628..555941 | - | 1314 | WP_022633743.1 | lytic murein transglycosylase | - |
| D083_RS02370 () | 556203..556805 | - | 603 | WP_022633745.1 | type III secretion system stator protein SctL | - |
| D083_RS02375 () | 556934..557527 | - | 594 | WP_023637837.1 | hypothetical protein | - |
| D083_RS02380 () | 557530..558312 | - | 783 | WP_023637838.1 | Yop proteins translocation lipoprotein J | VF |
| D083_RS02385 () | 558399..558764 | - | 366 | WP_022633748.1 | EscI/YscI/HrpB family type III secretion system inner rod protein | - |
| D083_RS02390 () | 558845..559051 | - | 207 | WP_033111884.1 | hypothetical protein | - |
| D083_RS02395 () | 559217..560200 | - | 984 | WP_022633749.1 | C4-dicarboxylate transport transcriptional regulatory protein DctD | VF |
| D083_RS02405 () | 560643..561284 | - | 642 | WP_022633751.1 | response regulator transcription factor | - |
| D083_RS02410 () | 561318..562784 | - | 1467 | WP_022633752.1 | PAS domain S-box protein | - |
| D083_RS02415 () | 563050..563604 | - | 555 | WP_022633753.1 | RNA polymerase sigma factor | - |
| D083_RS02420 () | 563927..565096 | + | 1170 | WP_022633754.1 | type III secretion system gatekeeper subunit SctW | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|