MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 48379 bp
Accession: NZ_CP016928 Location: 4694369..4742747 Organism: Dickeya solani RNS 08.23.3.1.A Replicon: chromosome
Accession: NZ_CP016928 Location: 4694369..4742747 Organism: Dickeya solani RNS 08.23.3.1.A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D083_RS20565 () | 4689655..4690329 | + | 675 | WP_022633092.1 | glutathione S-transferase family protein | - |
| D083_RS20570 () | 4690741..4691616 | - | 876 | WP_026594453.1 | alpha/beta hydrolase | - |
| D083_RS20575 () | 4691531..4692748 | - | 1218 | WP_022633094.1 | dienelactone hydrolase family protein | - |
| D083_RS21845 () | 4693150..4693437 | - | 288 | WP_146053333.1 | hypothetical protein | - |
| D083_RS20580 () | 4694900..4695964 | + | 1065 | WP_026594454.1 | DNA cytosine methyltransferase | - |
| D083_RS20585 () | 4695927..4698926 | + | 3000 | WP_080644163.1 | ATP-binding protein | - |
| D083_RS20590 () | 4698928..4700577 | + | 1650 | WP_022633097.1 | hypothetical protein | - |
| D083_RS20595 () | 4700938..4701339 | - | 402 | WP_023637748.1 | hypothetical protein | - |
| D083_RS21855 () | 4701403..4701696 | - | 294 | WP_146053334.1 | hypothetical protein | - |
| D083_RS20600 () | 4702087..4703031 | + | 945 | WP_022633099.1 | DUF1738 domain-containing protein | - |
| D083_RS20605 () | 4703352..4703588 | + | 237 | WP_022633100.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| D083_RS20610 () | 4703591..4703905 | + | 315 | WP_022633101.1 | CcdB family protein | Toxin Detail |
| D083_RS20615 () | 4703902..4704159 | - | 258 | WP_022633102.1 | hypothetical protein | - |
| D083_RS20620 () | 4704335..4705642 | - | 1308 | WP_022633103.1 | type II toxin-antitoxin system HipA family toxin | - |
| D083_RS20625 () | 4705642..4706049 | - | 408 | WP_071598628.1 | helix-turn-helix transcriptional regulator | - |
| D083_RS20635 () | 4706432..4707178 | - | 747 | WP_022633104.1 | hypothetical protein | - |
| D083_RS20640 () | 4707187..4708950 | - | 1764 | Protein_3981 | type IV secretory system conjugative DNA transfer family protein | - |
| D083_RS20650 () | 4709647..4709949 | - | 303 | WP_022633106.1 | KikA | - |
| D083_RS20655 () | 4709990..4711006 | - | 1017 | WP_022633107.1 | Type IV secretion system protein VirB11 | VF |
| D083_RS20660 () | 4710996..4712204 | - | 1209 | Protein_3984 | Type IV secretion system protein PtlG | VF |
| D083_RS20665 () | 4712201..4713091 | - | 891 | WP_022633110.1 | P-type conjugative transfer protein VirB9 | - |
| D083_RS20670 () | 4713091..4713774 | - | 684 | WP_022633111.1 | Type IV secretion system protein PtlE | VF |
| D083_RS20675 () | 4713995..4715023 | - | 1029 | WP_022633112.1 | type IV secretion system protein | - |
| D083_RS20680 () | 4715035..4715259 | - | 225 | WP_022633113.1 | EexN family lipoprotein | - |
| D083_RS20685 () | 4715271..4715987 | - | 717 | WP_022633114.1 | type IV secretion system protein | - |
| D083_RS20690 () | 4716013..4718760 | - | 2748 | WP_022633115.1 | Type IV secretion system protein virB4 | VF |
| D083_RS20695 () | 4718770..4719045 | - | 276 | WP_012769221.1 | hypothetical protein | VF |
| D083_RS20700 () | 4719065..4719712 | - | 648 | WP_022633116.1 | Type IV secretion system protein virB1 | VF |
| D083_RS20705 () | 4719782..4720015 | - | 234 | WP_022633117.1 | hypothetical protein | - |
| D083_RS20710 () | 4720581..4721096 | - | 516 | WP_022633118.1 | NAD(P)H-dependent oxidoreductase | - |
| D083_RS20715 () | 4721116..4722081 | - | 966 | WP_022633119.1 | aldo/keto reductase | - |
| D083_RS20720 () | 4722141..4723007 | - | 867 | WP_022633120.1 | SMP-30/gluconolactonase/LRE family protein | - |
| D083_RS20725 () | 4723090..4723563 | - | 474 | WP_022633121.1 | DMT family transporter | - |
| D083_RS20730 () | 4723575..4724972 | - | 1398 | WP_022633122.1 | amidohydrolase family protein | - |
| D083_RS20735 () | 4725104..4725988 | + | 885 | WP_022633123.1 | HTH-type transcriptional regulator PgrR | VF |
| D083_RS20740 () | 4726252..4726461 | - | 210 | WP_022633124.1 | TraR/DksA family transcriptional regulator | - |
| D083_RS20745 () | 4726451..4727035 | - | 585 | WP_022633125.1 | DUF2857 domain-containing protein | - |
| D083_RS20750 () | 4727052..4727246 | - | 195 | WP_022633126.1 | AlpA family transcriptional regulator | - |
| D083_RS20755 () | 4727922..4728179 | - | 258 | WP_012769229.1 | helix-turn-helix domain-containing protein | - |
| D083_RS20760 () | 4728293..4728571 | - | 279 | WP_012884168.1 | HTH-type transcriptional regulator Xre | VF |
| D083_RS20765 () | 4728705..4728992 | + | 288 | WP_022633127.1 | helix-turn-helix domain-containing protein | - |
| D083_RS20770 () | 4729270..4729515 | - | 246 | WP_013318575.1 | helix-turn-helix transcriptional regulator | - |
| D083_RS20775 () | 4730199..4730717 | + | 519 | WP_022633128.1 | Major exported protein | VF |
| D083_RS20780 () | 4730830..4732692 | + | 1863 | WP_022633129.1 | Actin cross-linking toxin VgrG1 | VF |
| D083_RS20785 () | 4732770..4733210 | + | 441 | WP_023637755.1 | DUF1795 domain-containing protein | - |
| D083_RS20790 () | 4733228..4737058 | + | 3831 | Protein_4010 | PAAR domain-containing protein | - |
| D083_RS20795 () | 4737427..4738272 | + | 846 | WP_023637756.1 | hypothetical protein | - |
| D083_RS21930 () | 4738571..4738717 | + | 147 | WP_155246175.1 | hypothetical protein | - |
| D083_RS20805 () | 4738879..4739805 | - | 927 | WP_022633133.1 | hypothetical protein | - |
| D083_RS20815 () | 4740821..4741132 | + | 312 | WP_022633134.1 | DUF736 domain-containing protein | - |
| D083_RS20820 () | 4741288..4742570 | - | 1283 | Protein_4015 | Prophage integrase IntA ; Integrase | Integrase |
| D083_RS20830 () | 4742917..4743708 | - | 792 | WP_022633137.1 | DgsA anti-repressor MtfA | - |
| D083_RS20840 () | 4744571..4745722 | - | 1152 | WP_022633138.1 | type I restriction enzyme HsdR N-terminal domain-containing protein | - |
| D083_RS20845 () | 4745756..4746145 | - | 390 | WP_023637758.1 | helix-turn-helix domain-containing protein | - |
| D083_RS20850 () | 4746573..4746740 | + | 168 | WP_022633139.1 | YqaE/Pmp3 family membrane protein | - |
| D083_RS20855 () | 4746813..4747367 | - | 555 | WP_022633140.1 | flavodoxin family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|