MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 60076 bp
Accession: NZ_CP016833 Location: 4145481..4205556 Organism: Xanthomonas fragariae isolate Fap29 Replicon: chromosome
Accession: NZ_CP016833 Location: 4145481..4205556 Organism: Xanthomonas fragariae isolate Fap29 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BER93_RS18970 () | 4141390..4141627 | + | 238 | Protein_3711 | transposase | - |
| BER93_RS22620 () | 4141827..4141934 | + | 108 | Protein_3712 | IS30 family transposase | - |
| BER93_RS18975 () | 4141962..4144202 | - | 2241 | WP_002803755.1 | glycine--tRNA ligase subunit beta | - |
| BER93_RS18980 () | 4144390..4145298 | - | 909 | WP_002803757.1 | glycine--tRNA ligase subunit alpha | - |
| BER93_RS18985 () | 4145389..4147203 | + | 1815 | WP_002803759.1 | GspE/PulE family protein | - |
| BER93_RS18990 () | 4147810..4148574 | + | 765 | WP_002803761.1 | glutamine amidotransferase | - |
| BER93_RS18995 () | 4148620..4149519 | + | 900 | WP_002803762.1 | hypothetical protein | - |
| BER93_RS19000 () | 4149843..4150580 | - | 738 | WP_002803765.1 | twin-arginine translocase subunit TatC | - |
| BER93_RS19005 () | 4150577..4151188 | - | 612 | WP_002803767.1 | Sec-independent protein translocase protein TatB | - |
| BER93_RS19010 () | 4151204..4151431 | - | 228 | WP_002803779.1 | Sec-independent protein translocase subunit TatA | - |
| BER93_RS19015 () | 4151505..4152389 | - | 885 | WP_002803781.1 | hypothetical protein | - |
| BER93_RS19020 () | 4152544..4153509 | + | 966 | WP_002803784.1 | ferrochelatase | - |
| BER93_RS19025 () | 4153512..4154378 | + | 867 | WP_040762195.1 | alpha/beta hydrolase | - |
| BER93_RS19030 () | 4154451..4155236 | - | 786 | WP_065975493.1 | M48 family metallopeptidase | - |
| BER93_RS22625 () | 4155330..4155470 | + | 141 | WP_156775375.1 | hypothetical protein | - |
| BER93_RS19035 () | 4155510..4156415 | - | 906 | WP_002803791.1 | recombination-associated protein RdgC | - |
| BER93_RS19040 () | 4156479..4157390 | - | 912 | WP_002803793.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| BER93_RS19050 () | 4157755..4158828 | - | 1074 | WP_002803797.1 | LacI family DNA-binding transcriptional regulator | - |
| BER93_RS22630 () | 4158864..4159435 | + | 572 | Protein_3729 | hypothetical protein | - |
| BER93_RS19065 () | 4159504..4162122 | + | 2619 | Protein_3730 | glycoside hydrolase family 3 C-terminal domain-containing protein | - |
| BER93_RS21575 () | 4162241..4162482 | + | 242 | Protein_3731 | hypothetical protein | - |
| BER93_RS19070 () | 4162459..4163828 | - | 1370 | Protein_3732 | IS5 family transposase IS1478 | Transposase |
| BER93_RS22635 () | 4164065..4164265 | - | 201 | Protein_3733 | IS481 family transposase ISRel12 | Transposase |
| BER93_RS19090 () | 4165701..4166804 | + | 1104 | WP_002803827.1 | type I restriction enzyme HsdR N-terminal domain-containing protein | - |
| BER93_RS19100 () | 4167342..4168148 | + | 807 | WP_002801519.1 | IS5 family transposase ISAzo23 | Transposase |
| BER93_RS22640 () | 4168164..4169698 | - | 1535 | Protein_3737 | GAF domain-containing protein | - |
| BER93_RS19110 () | 4169695..4170288 | - | 594 | WP_002803834.1 | biliverdin-producing heme oxygenase | - |
| BER93_RS21590 () | 4170388..4171168 | - | 781 | Protein_3739 | MFS transporter | - |
| BER93_RS19125 () | 4171295..4173460 | - | 2166 | WP_002803836.1 | lytic murein transglycosylase | - |
| BER93_RS19130 () | 4173847..4174053 | - | 207 | WP_002803837.1 | hypothetical protein | - |
| BER93_RS19135 () | 4174288..4174677 | - | 390 | WP_002803838.1 | YchJ family protein | - |
| BER93_RS19140 () | 4174863..4175642 | + | 780 | WP_002803839.1 | TSUP family transporter | - |
| BER93_RS19150 () | 4175924..4177105 | - | 1182 | WP_002803842.1 | DUF3322 and DUF2220 domain-containing protein | - |
| BER93_RS19155 () | 4177221..4180635 | - | 3415 | Protein_3745 | ATP-binding protein | - |
| BER93_RS19165 () | 4180936..4181637 | - | 702 | WP_002803844.1 | DUF4194 domain-containing protein | - |
| BER93_RS19170 () | 4181621..4183093 | - | 1473 | WP_002803846.1 | DUF3375 domain-containing protein | - |
| BER93_RS21595 () | 4183809..4183810 | - | 2 | WP_088079897.1 | IS5 family transposase | - |
| BER93_RS19180 () | 4184232..4184861 | - | 630 | WP_052032093.1 | GTP cyclohydrolase I FolE | - |
| BER93_RS19185 () | 4184932..4186293 | - | 1362 | WP_002803861.1 | MFS transporter | - |
| BER93_RS19190 () | 4186424..4186846 | - | 423 | WP_002803865.1 | hypothetical protein | - |
| BER93_RS19195 () | 4187163..4188179 | - | 1017 | WP_040762221.1 | hypothetical protein | - |
| BER93_RS19200 () | 4189449..4189655 | + | 207 | WP_002803872.1 | hypothetical protein | - |
| BER93_RS19205 () | 4189642..4190754 | + | 1113 | WP_002803875.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| BER93_RS19210 () | 4191112..4192109 | + | 998 | Protein_3755 | IS3 family transposase | - |
| BER93_RS19215 () | 4192399..4193367 | - | 969 | WP_065975413.1 | IS5 family transposase IS1646 | Transposase |
| BER93_RS21600 () | 4193612..4194625 | - | 1014 | WP_082244192.1 | hypothetical protein | - |
| BER93_RS19220 () | 4194806..4195408 | - | 603 | WP_083215096.1 | IS5 family transposase IS1478 | Transposase |
| BER93_RS22650 () | 4195514..4195816 | - | 303 | WP_145954077.1 | hypothetical protein | - |
| BER93_RS19225 () | 4196018..4196350 | + | 333 | WP_002803887.1 | hypothetical protein | - |
| BER93_RS19230 () | 4196894..4197184 | - | 291 | WP_002803896.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| BER93_RS19235 () | 4197203..4197484 | - | 282 | WP_002803897.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| BER93_RS19240 () | 4197948..4200023 | - | 2076 | WP_065975458.1 | exodeoxyribonuclease V subunit alpha | - |
| BER93_RS19245 () | 4200020..4203889 | - | 3870 | WP_002803902.1 | exodeoxyribonuclease V subunit beta | - |
| BER93_RS19250 () | 4203886..4207290 | - | 3405 | WP_002803905.1 | exodeoxyribonuclease V subunit gamma | - |
| BER93_RS19255 () | 4207693..4208487 | + | 795 | WP_002803908.1 | ATP-binding cassette domain-containing protein | - |
| BER93_RS19260 () | 4208487..4209236 | + | 750 | WP_002803911.1 | MlaE family lipid ABC transporter permease subunit | - |
| BER93_RS19265 () | 4209248..4209781 | + | 534 | WP_002803915.1 | outer membrane lipid asymmetry maintenance protein MlaD | - |
| BER93_RS19270 () | 4209778..4210440 | + | 663 | WP_002803917.1 | ABC transporter substrate-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|