MGE detailed information
MGE type: Conjugative plasmid MGE length: 35270 bp
Accession: NZ_CP016611 Location: 1..35270 Organism: Xylella fastidiosa strain Salento-2 Replicon: plasmid pSal2
Accession: NZ_CP016611 Location: 1..35270 Organism: Xylella fastidiosa strain Salento-2 Replicon: plasmid pSal2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BC375_RS12470 | 7..1407 | + | 1401 | WP_046417521.1 | TrbI/VirB10 family protein | - |
| BC375_RS11975 (BC375_11265) | 1426..2211 | + | 786 | WP_046417519.1 | P-type conjugative transfer protein TrbJ | - |
| BC375_RS12475 (BC375_11270) | 2224..2538 | + | 315 | WP_155561293.1 | EexN family lipoprotein | - |
| BC375_RS11985 (BC375_11275) | 2544..3941 | + | 1398 | WP_046417516.1 | P-type conjugative transfer protein TrbL | - |
| BC375_RS11990 | 3947..4681 | + | 735 | WP_232755968.1 | hypothetical protein | VF |
| BC375_RS11995 (BC375_11280) | 4577..5056 | - | 480 | Protein_6 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| BC375_RS12000 (BC375_11285) | 5046..5300 | + | 255 | WP_230950296.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| BC375_RS12480 | 5302..5475 | + | 174 | WP_155641416.1 | hypothetical protein | - |
| BC375_RS12005 (BC375_11290) | 5850..6176 | - | 327 | WP_004091396.1 | DNA-binding protein | - |
| BC375_RS12010 (BC375_11295) | 6306..6626 | - | 321 | WP_046417511.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| BC375_RS12015 | 6763..6849 | - | 87 | Protein_11 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| BC375_RS12020 (BC375_11300) | 7044..7286 | + | 243 | WP_004085758.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| BC375_RS12025 (BC375_11305) | 7279..7566 | + | 288 | WP_004085905.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| BC375_RS12030 (BC375_11310) | 7654..8211 | + | 558 | WP_046417502.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| BC375_RS12035 | 8398..12513 | - | 4116 | WP_046417500.1 | zincin-like metallopeptidase domain-containing protein | - |
| BC375_RS12040 (BC375_11320) | 12519..12881 | - | 363 | WP_046417499.1 | hypothetical protein | - |
| BC375_RS12045 (BC375_11325) | 12884..14941 | - | 2058 | WP_046417497.1 | DNA topoisomerase 3 | - |
| BC375_RS12050 (BC375_11330) | 14970..15506 | - | 537 | WP_046417495.1 | conjugative transfer signal peptidase TraF | - |
| BC375_RS12055 (BC375_11335) | 15503..17437 | - | 1935 | WP_046417494.1 | type IV secretory system conjugative DNA transfer family protein | - |
| BC375_RS12060 (BC375_11340) | 17434..19926 | - | 2493 | WP_046417493.1 | Protein TraI | Relaxase |
| BC375_RS12065 (BC375_11345) | 19961..20314 | - | 354 | WP_046417491.1 | conjugal transfer transcriptional regulator TraJ | - |
| BC375_RS12070 (BC375_11350) | 20528..20917 | + | 390 | WP_046417489.1 | TraK family protein | - |
| BC375_RS12075 (BC375_11355) | 20917..21642 | + | 726 | WP_046417487.1 | AAA family ATPase | - |
| BC375_RS12080 (BC375_11360) | 21648..22094 | + | 447 | WP_230950297.1 | conjugal transfer protein TraM | - |
| BC375_RS12085 (BC375_11365) | 22156..22752 | - | 597 | WP_046417484.1 | hypothetical protein | - |
| BC375_RS12090 (BC375_11370) | 22779..23132 | - | 354 | WP_004091455.1 | hypothetical protein | - |
| BC375_RS12095 (BC375_11375) | 23230..24249 | - | 1020 | WP_171817035.1 | ParB/RepB/Spo0J family partition protein | - |
| BC375_RS12100 (BC375_11380) | 24258..25022 | - | 765 | WP_046417477.1 | Chromosome-partitioning ATPase Soj | VF |
| BC375_RS12105 (BC375_11385) | 25019..25324 | - | 306 | WP_046417543.1 | transcriptional regulator KorA | - |
| BC375_RS12110 (BC375_11390) | 25520..25840 | - | 321 | WP_046417474.1 | KleE stable inheritance protein | - |
| BC375_RS12115 (BC375_11395) | 26556..27467 | - | 912 | WP_004091489.1 | replication protein RepA | - |
| BC375_RS12120 (BC375_11400) | 27511..27858 | - | 348 | WP_050812600.1 | hypothetical protein | - |
| BC375_RS12125 (BC375_11405) | 27902..28261 | - | 360 | WP_004091494.1 | single-stranded DNA-binding protein | - |
| BC375_RS12130 (BC375_11410) | 28379..28735 | + | 357 | WP_012382841.1 | transcriptional regulator | - |
| BC375_RS12135 (BC375_11415) | 28933..29892 | + | 960 | WP_046417547.1 | Putative conjugal transfer protein | VF |
| BC375_RS12140 (BC375_11420) | 29905..30297 | + | 393 | WP_046417535.1 | TrbC/VirB2 family protein | - |
| BC375_RS12145 (BC375_11425) | 30300..30620 | + | 321 | WP_046417532.1 | conjugal transfer protein TrbD | - |
| BC375_RS12150 (BC375_11430) | 30608..33172 | + | 2565 | WP_046417530.1 | conjugal transfer protein TrbE | - |
| BC375_RS12155 (BC375_11435) | 33169..33885 | + | 717 | WP_046417528.1 | conjugal transfer protein TrbF | - |
| BC375_RS12160 (BC375_11440) | 33902..34792 | + | 891 | WP_046417527.1 | P-type conjugative transfer protein TrbG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|