MGE detailed information
MGE type: Prophage MGE length: 80379 bp
Accession: NZ_CP016355 Location: 608351..688729 Organism: Lacticaseibacillus paracasei subsp. paracasei strain TMW 1.1434 Replicon: chromosome
Accession: NZ_CP016355 Location: 608351..688729 Organism: Lacticaseibacillus paracasei subsp. paracasei strain TMW 1.1434 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BBD24_RS02885 () | 603764..604981 | + | 1218 | WP_003604441.1 | MFS transporter | - |
| BBD24_RS02890 () | 605000..605899 | + | 900 | WP_100908409.1 | shikimate dehydrogenase | - |
| BBD24_RS02895 () | 606344..607159 | + | 816 | WP_003573694.1 | homoserine O-succinyltransferase | - |
| BBD24_RS02900 () | 607193..608122 | + | 930 | WP_022671487.1 | cysteine synthase A | - |
| BBD24_RS02905 () | 608351..609766 | + | 1416 | WP_016365202.1 | IS5-like element ISLca2 family transposase | - |
| BBD24_RS02910 () | 609885..610430 | - | 546 | WP_100908410.1 | hydrophobic protein | - |
| BBD24_RS02920 () | 610751..611920 | - | 1170 | WP_003569067.1 | site-specific integrase | - |
| BBD24_RS02925 () | 612033..612293 | - | 261 | WP_003606553.1 | hypothetical protein | - |
| BBD24_RS02930 () | 612324..613244 | - | 921 | WP_003574021.1 | IS30 family transposase | - |
| BBD24_RS02935 () | 613437..614057 | + | 621 | WP_003586911.1 | hypothetical protein | - |
| BBD24_RS02950 () | 614469..615176 | - | 708 | WP_003586913.1 | zinc ribbon domain-containing protein | - |
| BBD24_RS02955 () | 615335..615565 | - | 231 | Protein_551 | hypothetical protein | - |
| BBD24_RS02965 () | 615686..616528 | - | 843 | WP_157810981.1 | IS3 family transposase | - |
| BBD24_RS02970 () | 616582..616833 | - | 252 | WP_003586983.1 | IS3 family transposase | - |
| BBD24_RS02975 () | 616914..617111 | - | 198 | Protein_554 | hypothetical protein | - |
| BBD24_RS02980 () | 617104..617457 | - | 354 | WP_003572184.1 | helix-turn-helix transcriptional regulator | - |
| BBD24_RS02985 () | 617701..617949 | + | 249 | WP_003574003.1 | hypothetical protein | - |
| BBD24_RS02990 () | 617991..618191 | + | 201 | WP_003572187.1 | hypothetical protein | - |
| BBD24_RS02995 () | 618162..618995 | - | 834 | WP_003586916.1 | TIGR02391 family protein | - |
| BBD24_RS03000 () | 619056..619814 | + | 759 | WP_010493122.1 | ORF6C domain-containing protein | - |
| BBD24_RS03005 () | 619815..619994 | + | 180 | WP_003572193.1 | hypothetical protein | - |
| BBD24_RS03010 () | 619987..620238 | - | 252 | WP_003606636.1 | DUF1883 domain-containing protein | - |
| BBD24_RS03015 () | 620304..620660 | + | 357 | WP_003586919.1 | DUF771 domain-containing protein | - |
| BBD24_RS03025 () | 620745..620948 | + | 204 | WP_003572201.1 | hypothetical protein | - |
| BBD24_RS03030 () | 620931..621476 | - | 546 | WP_003586921.1 | hypothetical protein | - |
| BBD24_RS03035 () | 621657..621971 | + | 315 | WP_003661649.1 | hypothetical protein | - |
| BBD24_RS03040 () | 621964..622710 | + | 747 | WP_003586926.1 | DnaD domain protein | - |
| BBD24_RS03045 () | 622725..623549 | + | 825 | WP_003574014.1 | ATP-binding protein | - |
| BBD24_RS03050 () | 623549..624067 | + | 519 | WP_003574016.1 | exonuclease domain-containing protein | - |
| BBD24_RS03055 () | 624114..624536 | + | 423 | WP_003564822.1 | hypothetical protein | - |
| BBD24_RS03060 () | 624538..625275 | + | 738 | WP_003572217.1 | hypothetical protein | - |
| BBD24_RS03065 () | 625287..625574 | + | 288 | WP_010493149.1 | hypothetical protein | - |
| BBD24_RS03070 () | 625644..625976 | + | 333 | WP_003586929.1 | hypothetical protein | - |
| BBD24_RS03080 () | 626491..626934 | + | 444 | WP_010493154.1 | autolysin regulatory protein arpU | - |
| BBD24_RS03085 () | 627447..628100 | + | 654 | WP_003586931.1 | hypothetical protein | - |
| BBD24_RS03090 () | 628351..629347 | + | 997 | Protein_575 | IS30 family transposase | - |
| BBD24_RS03095 () | 629543..629761 | - | 219 | WP_003573729.1 | CsbD family protein | - |
| BBD24_RS03100 () | 630184..631400 | + | 1217 | Protein_577 | hypothetical protein | - |
| BBD24_RS03110 () | 631387..631722 | + | 336 | WP_010493173.1 | ribonucleoside-diphosphate reductase | - |
| BBD24_RS03120 () | 631884..632192 | + | 309 | WP_100908412.1 | transposase | - |
| BBD24_RS03125 () | 632238..632966 | + | 729 | WP_100908413.1 | helix-turn-helix domain-containing protein | - |
| BBD24_RS03130 () | 632900..633841 | + | 942 | WP_014951815.1 | IS3 family transposase | - |
| BBD24_RS03140 () | 634146..635561 | - | 1416 | WP_019890870.1 | IS5-like element ISLca2 family transposase | - |
| BBD24_RS03145 () | 635696..636319 | + | 624 | Protein_583 | DDE-type integrase/transposase/recombinase | - |
| BBD24_RS03160 () | 636967..638397 | - | 1431 | WP_049176765.1 | ISLre2 family transposase | - |
| BBD24_RS03165 () | 638649..638927 | + | 279 | WP_003586951.1 | hypothetical protein | - |
| BBD24_RS03170 () | 638939..639205 | + | 267 | WP_014566886.1 | hypothetical protein | - |
| BBD24_RS03175 () | 639229..640754 | + | 1526 | Protein_587 | DUF5011 domain-containing protein | - |
| BBD24_RS03180 () | 640773..641249 | + | 477 | WP_014566884.1 | PcfB family protein | - |
| BBD24_RS03185 () | 641249..643150 | + | 1902 | WP_100908414.1 | type IV secretory system conjugative DNA transfer family protein | - |
| BBD24_RS03190 () | 643168..643374 | + | 207 | WP_003571730.1 | hypothetical protein | - |
| BBD24_RS03195 () | 643394..644227 | + | 834 | WP_003571732.1 | hypothetical protein | - |
| BBD24_RS03205 () | 644415..645257 | - | 843 | WP_157810982.1 | IS3 family transposase | - |
| BBD24_RS03210 () | 645311..645562 | - | 252 | WP_003586983.1 | IS3 family transposase | - |
| BBD24_RS03215 () | 645679..646095 | + | 417 | Protein_594 | DDE-type integrase/transposase/recombinase | - |
| BBD24_RS03220 () | 646256..646717 | - | 462 | Protein_595 | transposase | - |
| BBD24_RS03225 () | 646730..646993 | - | 264 | WP_003587109.1 | hypothetical protein | - |
| BBD24_RS03230 () | 647053..649875 | - | 2823 | WP_003587111.1 | cation-transporting P-type ATPase | - |
| BBD24_RS03235 () | 650183..650970 | + | 788 | WP_100908416.1 | IS5 family transposase | - |
| BBD24_RS03240 () | 650967..651128 | - | 162 | WP_016363761.1 | hypothetical protein | - |
| BBD24_RS03245 () | 651487..652074 | - | 588 | WP_003586668.1 | site-specific integrase | - |
| BBD24_RS03250 () | 652151..652429 | + | 279 | WP_003586674.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| BBD24_RS03255 () | 652429..652803 | + | 375 | WP_003586676.1 | type II toxin-antitoxin system YafQ family toxin | - |
| BBD24_RS03260 () | 653073..654488 | - | 1416 | WP_016365202.1 | IS5-like element ISLca2 family transposase | - |
| BBD24_RS03265 () | 654897..655364 | + | 468 | WP_003587210.1 | DNA starvation/stationary phase protection protein | - |
| BBD24_RS03270 () | 655611..656354 | + | 744 | WP_003587212.1 | ABC transporter ATP-binding protein | - |
| BBD24_RS03275 () | 656332..657579 | + | 1248 | WP_010620835.1 | ABC transporter permease | - |
| BBD24_RS03280 () | 657584..658255 | + | 672 | WP_003587215.1 | TetR/AcrR family transcriptional regulator | - |
| BBD24_RS03285 () | 658434..659849 | + | 1416 | WP_019890870.1 | IS5-like element ISLca2 family transposase | - |
| BBD24_RS03290 () | 659928..660664 | - | 737 | Protein_609 | nicotinate phosphoribosyltransferase | - |
| BBD24_RS03295 () | 660727..661172 | + | 446 | Protein_610 | transposase | - |
| BBD24_RS03300 () | 661236..662253 | + | 1018 | Protein_611 | IS30 family transposase | - |
| BBD24_RS03305 () | 662374..662922 | - | 549 | WP_100908686.1 | DNA starvation/stationary phase protection protein | - |
| BBD24_RS03310 () | 662932..663153 | - | 222 | WP_003582479.1 | cation transporter | - |
| BBD24_RS03315 () | 663195..665093 | - | 1899 | WP_016377436.1 | heavy metal translocating P-type ATPase | - |
| BBD24_RS03320 () | 665328..665630 | - | 303 | Protein_615 | IS5/IS1182 family transposase | - |
| BBD24_RS03335 () | 666707..667138 | + | 432 | WP_003607154.1 | CopY/TcrY family copper transport repressor | - |
| BBD24_RS03340 () | 667389..669655 | + | 2267 | Protein_618 | copper-translocating P-type ATPase | - |
| BBD24_RS03345 () | 669730..670056 | - | 327 | Protein_619 | MFS transporter | - |
| BBD24_RS03350 () | 670078..670367 | - | 290 | Protein_620 | transposase | - |
| BBD24_RS03355 () | 670427..670648 | - | 222 | Protein_621 | transposase | - |
| BBD24_RS03360 () | 670845..672377 | + | 1533 | WP_003606758.1 | ABC transporter permease/substrate-binding protein | - |
| BBD24_RS03365 () | 672377..673315 | + | 939 | WP_003606756.1 | ABC transporter ATP-binding protein | - |
| BBD24_RS03370 () | 673545..674606 | + | 1062 | WP_003589055.1 | ABC transporter permease | - |
| BBD24_RS03375 () | 674611..675282 | + | 672 | WP_003606755.1 | ABC transporter ATP-binding protein | - |
| BBD24_RS03380 () | 675389..676072 | + | 684 | WP_049169626.1 | IS6 family transposase | - |
| BBD24_RS03385 () | 676315..676743 | - | 429 | WP_003586786.1 | hypothetical protein | - |
| BBD24_RS03395 () | 676932..677597 | - | 666 | Protein_628 | IS30 family transposase | - |
| BBD24_RS03400 () | 677734..679149 | + | 1416 | WP_019890870.1 | IS5-like element ISLca2 family transposase | - |
| BBD24_RS03405 () | 679315..681486 | - | 2172 | WP_003607130.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| BBD24_RS03410 () | 681658..682647 | + | 990 | WP_003586769.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| BBD24_RS03415 () | 682644..683129 | + | 486 | WP_003586772.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| BBD24_RS03425 () | 683861..684103 | + | 243 | WP_016363783.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| BBD24_RS03430 () | 684096..684377 | + | 282 | WP_003573774.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| BBD24_RS03435 () | 684577..684975 | + | 399 | WP_003586778.1 | DUF1722 domain-containing protein | - |
| BBD24_RS03440 () | 685220..686329 | - | 1110 | WP_003607129.1 | hypothetical protein | - |
| BBD24_RS03445 () | 686331..687773 | - | 1443 | WP_003586782.1 | hypothetical protein | - |
| BBD24_RS03455 () | 688046..688729 | + | 684 | WP_002816607.1 | IS6 family transposase | - |
| BBD24_RS03460 () | 689062..691830 | + | 2769 | WP_003607349.1 | CRISPR-associated helicase/endonuclease Cas3 | - |
| BBD24_RS03465 () | 691811..693520 | + | 1710 | WP_003586647.1 | type I-E CRISPR-associated protein Cse1/CasA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|