MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 70304 bp
Accession: NZ_CP016274 Location: 1..70304 Organism: Yersinia pestis strain Cadman Replicon: plasmid pCD1
Accession: NZ_CP016274 Location: 1..70304 Organism: Yersinia pestis strain Cadman Replicon: plasmid pCD1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAY22_RS21265 () | 1..1319 | + | 1319 | Protein_0 | putative ATP synthase YscN | VF |
| BAY22_RS21270 () | 1316..1780 | + | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| BAY22_RS21275 () | 1780..3147 | + | 1368 | WP_002212950.1 | hypothetical protein | VF |
| BAY22_RS21280 () | 3144..4067 | + | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| BAY22_RS21285 () | 4064..4717 | + | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| BAY22_RS21290 () | 4719..4985 | + | 267 | WP_002212945.1 | hypothetical protein | VF |
| BAY22_RS21295 () | 4982..5767 | + | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| BAY22_RS21300 () | 5767..6831 | + | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| BAY22_RS21305 () | 7407..7802 | + | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| BAY22_RS21310 () | 7926..8741 | + | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| BAY22_RS21315 () | 8820..8918 | + | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| BAY22_RS21320 () | 9144..9557 | + | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| BAY22_RS21325 () | 9563..11386 | + | 1824 | WP_002212923.1 | Yop proteins translocation protein C | VF |
| BAY22_RS21330 () | 11383..12642 | + | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| BAY22_RS21335 () | 12639..12839 | + | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| BAY22_RS21340 () | 12840..13103 | + | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| BAY22_RS21345 () | 13105..13452 | + | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| BAY22_RS21350 () | 13449..13946 | + | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| BAY22_RS21355 () | 13947..14294 | + | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| BAY22_RS21360 () | 14301..15035 | + | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| BAY22_RS21365 () | 15035..15664 | + | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| BAY22_RS21370 () | 15610..16275 | + | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| BAY22_RS21375 () | 16500..16847 | + | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| BAY22_RS24080 () | 17395..18424 | + | 1030 | Protein_23 | IS3 family transposase | - |
| BAY22_RS23575 () | 18443..18715 | + | 273 | Protein_24 | transposase | - |
| BAY22_RS21395 () | 18936..20342 | - | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| BAY22_RS21400 () | 20625..20858 | - | 234 | Protein_26 | transposase domain-containing protein | - |
| BAY22_RS21405 () | 20861..21439 | + | 579 | Protein_27 | IS3 family transposase ISYpe1 | Transposase |
| BAY22_RS21410 () | 22025..22891 | - | 867 | WP_002213287.1 | Effector protein YopJ | VF |
| BAY22_RS21415 () | 23287..25485 | - | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| BAY22_RS21420 () | 25493..25942 | - | 450 | WP_002229809.1 | hypothetical protein | VF |
| BAY22_RS24085 () | 26198..26510 | - | 313 | Protein_31 | IS3 family transposase ISKpn37 | Transposase |
| BAY22_RS23590 () | 26688..26927 | - | 240 | WP_002213291.1 | hypothetical protein | - |
| BAY22_RS21430 () | 28105..28983 | - | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| BAY22_RS21435 () | 28964..29038 | - | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| BAY22_RS21440 () | 29280..29534 | - | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| BAY22_RS21445 () | 29672..29920 | - | 249 | WP_002233137.1 | Phospholipase D | VF |
| BAY22_RS23600 () | 30046..30354 | + | 309 | Protein_37 | DDE-type integrase/transposase/recombinase | - |
| BAY22_RS24820 () | 30337..30744 | - | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| BAY22_RS21455 () | 30768..31085 | - | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
| BAY22_RS21460 () | 31257..31715 | - | 459 | WP_002213246.1 | hypothetical protein | - |
| BAY22_RS21465 () | 31784..32053 | + | 270 | WP_042469136.1 | transposase | - |
| BAY22_RS25095 () | 32151..32309 | - | 159 | Protein_42 | EamA family transporter | - |
| BAY22_RS23610 () | 32379..33682 | - | 1304 | Protein_43 | Adhesin YadA | VF |
| BAY22_RS21485 () | 34282..34632 | + | 351 | Protein_44 | IS3 family transposase IS1351 | Transposase |
| BAY22_RS21490 () | 34665..36980 | - | 2316 | WP_002213256.1 | Tn3 family transposase ISEc63 | Transposase |
| BAY22_RS21495 () | 37144..37695 | + | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| BAY22_RS21500 () | 37714..38178 | + | 465 | WP_002224338.1 | hypothetical protein | - |
| BAY22_RS21505 () | 38317..38646 | + | 330 | WP_002229829.1 | hypothetical protein | - |
| BAY22_RS21515 () | 38746..39845 | + | 1100 | WP_086016640.1 | IS3 family transposase ISYpe1 | Transposase |
| BAY22_RS21520 () | 39993..40418 | - | 426 | WP_002213267.1 | hypothetical protein | VF |
| BAY22_RS21525 () | 40794..41192 | - | 399 | Protein_51 | IS21 family transposase IS21 | Transposase |
| BAY22_RS21530 () | 41192..42118 | - | 927 | Protein_52 | IS21 family transposase IS21 | Transposase |
| BAY22_RS21535 () | 42207..43229 | + | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| BAY22_RS21540 () | 43229..44008 | + | 780 | WP_001297096.1 | IS21 family transposase IS100kyp | Transposase |
| BAY22_RS24670 () | 44075..44323 | - | 249 | Protein_55 | IS21 family transposase IS21 | Transposase |
| BAY22_RS21550 () | 44426..45070 | + | 645 | Protein_56 | IS3 family transposase ISYen3 | Transposase |
| BAY22_RS21555 () | 45133..45525 | - | 393 | WP_002213403.1 | YopE regulator | VF |
| BAY22_RS21560 () | 45719..46378 | + | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| BAY22_RS21565 () | 46518..46817 | - | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| BAY22_RS21570 () | 46810..47052 | - | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| BAY22_RS24100 () | 47218..47510 | - | 293 | Protein_61 | IS6 family transposase ISEas1 | Transposase |
| BAY22_RS25100 () | 47596..47769 | + | 174 | WP_002213357.1 | hypothetical protein | - |
| BAY22_RS24825 () | 47918..48154 | - | 237 | WP_154020274.1 | hypothetical protein | - |
| BAY22_RS21580 () | 48314..49279 | - | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| BAY22_RS21585 () | 49276..50442 | - | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| BAY22_RS24675 () | 51202..52347 | - | 1146 | Protein_66 | IS3 family transposase | - |
| BAY22_RS21605 () | 52454..53083 | - | 630 | WP_002229770.1 | hypothetical protein | - |
| BAY22_RS24110 () | 53229..53522 | - | 294 | Protein_68 | IS3 family transposase | - |
| BAY22_RS21610 () | 53681..54229 | - | 549 | WP_002213007.1 | hypothetical protein | VF |
| BAY22_RS21615 () | 54729..55697 | + | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
| BAY22_RS21620 () | 55697..56095 | + | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| BAY22_RS23650 () | 56501..56782 | + | 282 | Protein_72 | DDE-type integrase/transposase/recombinase | - |
| BAY22_RS21630 () | 56800..57219 | + | 420 | WP_002222515.1 | hypothetical protein | - |
| BAY22_RS24680 () | 57747..57965 | - | 219 | Protein_74 | IS6 family transposase | - |
| BAY22_RS24830 () | 57968..58213 | + | 246 | WP_116442925.1 | transposase | - |
| BAY22_RS21635 () | 58095..58412 | + | 318 | Protein_76 | IS256 family transposase ISSod4 | Transposase |
| BAY22_RS21640 () | 58455..59684 | - | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| BAY22_RS21645 () | 60078..60287 | - | 210 | WP_002229781.1 | hypothetical protein | - |
| BAY22_RS24115 () | 60308..60945 | + | 638 | Protein_79 | IS6 family transposase | - |
| BAY22_RS21650 () | 61413..62333 | - | 921 | WP_002212987.1 | Protein YopD | VF |
| BAY22_RS21655 () | 62352..63557 | - | 1206 | WP_002212985.1 | Protein YopB | VF |
| BAY22_RS21660 () | 63535..64041 | - | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| BAY22_RS21665 () | 64054..65034 | - | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| BAY22_RS21670 () | 65036..65323 | - | 288 | WP_002212973.1 | hypothetical protein | VF |
| BAY22_RS21675 () | 65365..65805 | - | 441 | WP_002220918.1 | hypothetical protein | VF |
| BAY22_RS21680 () | 65802..67916 | - | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| BAY22_RS21685 () | 67903..68247 | - | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| BAY22_RS21690 () | 68244..68612 | - | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| BAY22_RS21695 () | 68609..68980 | - | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| BAY22_RS21700 () | 68967..69245 | - | 279 | WP_002212965.1 | Protein TyeA | VF |
| BAY22_RS21705 () | 69226..70107 | - | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|