MGE detailed information
MGE type: Genomic_island MGE length: 29828 bp
Accession: NZ_CP015749 Location: 2614646..2644473 Organism: Pectobacterium parmentieri strain RNS 08-42-1A Replicon: chromosome
Accession: NZ_CP015749 Location: 2614646..2644473 Organism: Pectobacterium parmentieri strain RNS 08-42-1A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A8F97_RS11875 () | 2612708..2613922 | + | 1215 | WP_033071089.1 | tyrosine-type recombinase/integrase | - |
| A8F97_RS11885 () | 2614407..2614628 | + | 222 | WP_033071087.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| A8F97_RS11890 () | 2614646..2615806 | + | 1161 | WP_033071086.1 | serine/threonine-protein phosphatase | - |
| A8F97_RS11895 () | 2615818..2616873 | + | 1056 | WP_033071085.1 | Serine/threonine-protein kinase PrkC | VF |
| A8F97_RS11900 () | 2616870..2617943 | + | 1074 | WP_033071084.1 | serine/threonine protein kinase | - |
| A8F97_RS11905 () | 2617967..2619718 | + | 1752 | WP_033071083.1 | ATP-dependent endonuclease | - |
| A8F97_RS11910 () | 2619715..2621454 | + | 1740 | WP_033071082.1 | ATP-dependent helicase | - |
| A8F97_RS11915 () | 2621508..2621912 | - | 405 | Protein_2378 | DUF1016 family protein | - |
| A8F97_RS11920 () | 2622041..2622616 | - | 576 | WP_033071081.1 | hypothetical protein | - |
| A8F97_RS11925 () | 2622720..2622926 | - | 207 | WP_033071080.1 | AlpA family transcriptional regulator | - |
| A8F97_RS11930 () | 2623030..2623611 | - | 582 | WP_033071079.1 | inovirus-type Gp2 protein | - |
| A8F97_RS11935 () | 2623977..2624771 | + | 795 | WP_033071078.1 | hypothetical protein | - |
| A8F97_RS11940 () | 2624897..2625772 | + | 876 | WP_033071077.1 | GTPase family protein | - |
| A8F97_RS11945 () | 2626142..2626840 | + | 699 | WP_033071076.1 | DeoR family transcriptional regulator | - |
| A8F97_RS11950 () | 2627022..2627591 | + | 570 | WP_033071075.1 | hypothetical protein | - |
| A8F97_RS11955 () | 2627627..2628100 | + | 474 | WP_033071074.1 | hypothetical protein | - |
| A8F97_RS11960 () | 2628117..2628350 | + | 234 | WP_033071073.1 | membrane protein | - |
| A8F97_RS11965 () | 2628438..2628911 | + | 474 | WP_033071072.1 | DNA repair protein RadC | - |
| A8F97_RS11970 () | 2628951..2629286 | + | 336 | WP_033071071.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| A8F97_RS11975 () | 2629357..2629677 | + | 321 | WP_033071070.1 | TA system toxin CbtA family protein | Toxin Detail |
| A8F97_RS11980 () | 2629795..2630628 | + | 834 | WP_033071967.1 | DUF4942 domain-containing protein | - |
| A8F97_RS11985 () | 2630723..2630953 | + | 231 | WP_012765080.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| A8F97_RS11990 () | 2630953..2631357 | + | 405 | WP_033071069.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| A8F97_RS11995 () | 2631747..2632191 | + | 445 | Protein_2394 | DUF4102 domain-containing protein | - |
| A8F97_RS12000 () | 2632311..2632715 | - | 405 | WP_050512634.1 | hypothetical protein | - |
| A8F97_RS12005 () | 2633175..2633495 | - | 321 | WP_033071068.1 | hypothetical protein | - |
| A8F97_RS12010 () | 2633872..2635167 | - | 1296 | WP_033071067.1 | J domain-containing protein | - |
| A8F97_RS12015 () | 2635164..2636870 | - | 1707 | WP_162939894.1 | molecular chaperone HscC | - |
| A8F97_RS12020 () | 2637322..2637660 | - | 339 | WP_025919186.1 | hypothetical protein | - |
| A8F97_RS23230 () | 2638067..2638291 | - | 225 | WP_157985451.1 | LysE family transporter | - |
| A8F97_RS23235 () | 2638416..2638881 | - | 466 | Protein_2401 | nuclear transport factor 2 family protein | - |
| A8F97_RS12025 () | 2638944..2639513 | - | 570 | WP_014699063.1 | TetR family transcriptional regulator | - |
| A8F97_RS12030 () | 2639586..2640044 | - | 459 | WP_081439986.1 | NUDIX domain-containing protein | - |
| A8F97_RS23240 () | 2640191..2640433 | + | 243 | WP_082218643.1 | GIY-YIG nuclease family protein | - |
| A8F97_RS12035 () | 2640913..2641890 | + | 978 | WP_014699061.1 | DUF1852 domain-containing protein | - |
| A8F97_RS12040 () | 2641918..2642949 | + | 1032 | WP_014699060.1 | methionine synthase | - |
| A8F97_RS12045 () | 2643047..2643412 | - | 366 | WP_014699059.1 | DUF4751 family protein | - |
| A8F97_RS12050 () | 2643526..2644473 | - | 948 | WP_014699058.1 | Coagulase/fibrinolysin | VF |
| A8F97_RS12055 () | 2645023..2646477 | + | 1455 | WP_127087862.1 | M20 family metallo-hydrolase | - |
| A8F97_RS12060 () | 2646626..2646847 | - | 222 | WP_005970017.1 | acyl carrier protein | - |
| A8F97_RS12065 () | 2646865..2648298 | - | 1434 | WP_033071066.1 | AMP-binding protein | - |
| A8F97_RS12070 () | 2648295..2649413 | - | 1119 | WP_014699055.1 | cytochrome c552 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|