MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 177851 bp
Accession: NZ_CP015523 Location: 1..177851 Organism: Sphingomonas sp. NIC1 Replicon: plasmid unnamed2
Accession: NZ_CP015523 Location: 1..177851 Organism: Sphingomonas sp. NIC1 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7E77_RS16250 () | 389..1801 | + | 1413 | WP_063690196.1 | HAMP domain-containing histidine kinase | - |
| A7E77_RS16255 () | 1762..2460 | - | 699 | WP_063690199.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| A7E77_RS16260 () | 2863..3426 | + | 564 | Protein_3 | recombinase family protein | - |
| A7E77_RS17495 () | 3460..3678 | + | 219 | Protein_4 | transposase | - |
| A7E77_RS16265 () | 3642..3884 | + | 243 | WP_151895506.1 | hypothetical protein | - |
| A7E77_RS16270 () | 3935..4226 | + | 292 | Protein_6 | IS66 family insertion sequence element accessory protein TnpB | - |
| A7E77_RS16275 () | 4336..5769 | + | 1434 | WP_056439428.1 | IS66 family transposase | - |
| A7E77_RS16280 () | 5816..7240 | - | 1425 | WP_063690205.1 | transposase | - |
| A7E77_RS16295 () | 8736..9526 | - | 791 | Protein_10 | SDR family oxidoreductase | - |
| A7E77_RS16300 () | 9574..10428 | - | 855 | WP_063690210.1 | SDR family oxidoreductase | - |
| A7E77_RS16305 () | 10458..11258 | - | 801 | WP_192930057.1 | dioxygenase | - |
| A7E77_RS16310 () | 11389..12296 | + | 908 | Protein_13 | LysR family transcriptional regulator | - |
| A7E77_RS16315 () | 12515..13531 | - | 1017 | WP_063690212.1 | zinc-binding alcohol dehydrogenase family protein | - |
| A7E77_RS16320 () | 13616..14155 | - | 540 | Protein_15 | LysR family transcriptional regulator | - |
| A7E77_RS17500 () | 14331..14432 | - | 102 | Protein_16 | transposon DNA-invertase | - |
| A7E77_RS16325 () | 14492..15037 | - | 546 | WP_063690214.1 | peroxidase-related enzyme | - |
| A7E77_RS16330 () | 15132..15925 | + | 794 | Protein_18 | AraC family transcriptional regulator | - |
| A7E77_RS17505 () | 16027..16143 | + | 117 | WP_078462371.1 | conjugal transfer protein TraD | - |
| A7E77_RS16335 () | 16140..16430 | + | 291 | WP_063690216.1 | hypothetical protein | - |
| A7E77_RS18110 () | 16427..16591 | + | 165 | WP_192930060.1 | hypothetical protein | - |
| A7E77_RS17510 () | 16681..17223 | - | 543 | WP_078462357.1 | MarR family transcriptional regulator | - |
| A7E77_RS16340 () | 17328..17804 | + | 477 | WP_010339850.1 | DUF417 family protein | - |
| A7E77_RS16345 () | 17938..18522 | + | 585 | WP_010339849.1 | recombinase family protein | - |
| A7E77_RS16350 () | 18527..21505 | + | 2979 | WP_012449407.1 | Tn3-like element ISMpo10 family transposase | - |
| A7E77_RS16355 () | 21538..21939 | - | 402 | Protein_26 | LysR family transcriptional regulator | - |
| A7E77_RS16360 () | 22053..22847 | + | 795 | WP_063690385.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| A7E77_RS16365 () | 22919..23215 | + | 297 | WP_063690219.1 | antibiotic biosynthesis monooxygenase | - |
| A7E77_RS17810 () | 23226..23408 | + | 183 | WP_151895509.1 | hypothetical protein | - |
| A7E77_RS16370 () | 23422..24162 | + | 741 | WP_063690222.1 | SDR family oxidoreductase | - |
| A7E77_RS16375 () | 24274..24567 | + | 294 | WP_063690226.1 | hypothetical protein | - |
| A7E77_RS16380 () | 24629..25555 | - | 927 | WP_078462358.1 | IS110 family transposase | - |
| A7E77_RS16385 () | 25778..26197 | + | 420 | WP_063690229.1 | heme-binding protein | - |
| A7E77_RS16390 () | 26503..27641 | + | 1139 | Protein_34 | glutathione-independent formaldehyde dehydrogenase | - |
| A7E77_RS16395 () | 27673..28140 | + | 468 | Protein_35 | DJ-1/PfpI family protein | - |
| A7E77_RS16400 () | 28220..29731 | + | 1512 | WP_078462179.1 | IS21 family transposase | - |
| A7E77_RS16405 () | 29718..30446 | + | 729 | WP_062127353.1 | IS21-like element helper ATPase IstB | - |
| A7E77_RS16410 () | 30618..30962 | - | 345 | Protein_38 | MerR family DNA-binding protein | - |
| A7E77_RS16415 () | 31026..31793 | + | 768 | WP_017980773.1 | glutaredoxin family protein | - |
| A7E77_RS16420 () | 31815..32141 | - | 327 | WP_017980774.1 | copper-binding protein | - |
| A7E77_RS16425 () | 32141..35276 | - | 3136 | Protein_41 | efflux RND transporter permease subunit | - |
| A7E77_RS16430 () | 35273..36771 | - | 1499 | Protein_42 | efflux RND transporter periplasmic adaptor subunit | - |
| A7E77_RS16435 () | 36768..37997 | - | 1230 | WP_017980777.1 | TolC family protein | - |
| A7E77_RS16440 () | 38883..39332 | - | 450 | WP_024310685.1 | metal-binding protein | - |
| A7E77_RS16445 () | 39401..39793 | - | 393 | WP_042469554.1 | DUF305 domain-containing protein | - |
| A7E77_RS16450 () | 39927..40663 | - | 737 | Protein_46 | hypothetical protein | - |
| A7E77_RS16455 () | 40689..41284 | - | 596 | Protein_47 | cytochrome c | - |
| A7E77_RS16460 () | 41288..42328 | - | 1041 | WP_151895518.1 | copper resistance protein B | - |
| A7E77_RS16465 () | 42577..44609 | - | 2033 | Protein_49 | copper resistance system multicopper oxidase | - |
| A7E77_RS16470 () | 44677..45246 | - | 570 | WP_017980785.1 | RNA polymerase sigma factor | - |
| A7E77_RS16475 () | 45257..45697 | - | 441 | WP_017980786.1 | periplasmic heavy metal sensor | - |
| A7E77_RS16480 () | 45694..45963 | - | 270 | WP_020486670.1 | hypothetical protein | - |
| A7E77_RS16485 () | 46091..46459 | + | 369 | WP_020486671.1 | copper homeostasis periplasmic binding protein CopC | - |
| A7E77_RS16490 () | 46481..47389 | + | 909 | WP_063690235.1 | copper homeostasis membrane protein CopD | - |
| A7E77_RS16495 () | 47441..47709 | + | 269 | Protein_55 | flagellar biosynthetic protein FliQ | - |
| A7E77_RS16500 () | 47755..48087 | - | 333 | WP_017980791.1 | four-helix bundle copper-binding protein | - |
| A7E77_RS16505 () | 48177..49049 | - | 873 | WP_063690241.1 | DUF4396 domain-containing protein | - |
| A7E77_RS16510 () | 49125..50437 | - | 1313 | Protein_58 | type II restriction endonuclease | - |
| A7E77_RS18115 () | 50663..50914 | - | 252 | WP_192930061.1 | hypothetical protein | - |
| A7E77_RS16520 () | 50855..53125 | + | 2271 | WP_078462372.1 | heavy metal translocating P-type ATPase | - |
| A7E77_RS16525 () | 53122..53505 | + | 384 | WP_063690251.1 | Cu(I)-responsive transcriptional regulator | - |
| A7E77_RS16530 () | 53558..54079 | - | 522 | WP_017980796.1 | hypothetical protein | - |
| A7E77_RS16535 () | 54292..55539 | + | 1248 | WP_063690254.1 | cytochrome P450 | - |
| A7E77_RS16540 () | 55613..56029 | - | 417 | WP_063690257.1 | helix-turn-helix domain-containing protein | - |
| A7E77_RS16545 () | 56092..56508 | + | 417 | WP_063690260.1 | hypothetical protein | - |
| A7E77_RS16550 () | 57130..57684 | + | 555 | Protein_66 | retropepsin-like domain-containing protein | - |
| A7E77_RS16555 () | 57855..58583 | - | 729 | WP_062127353.1 | IS21-like element helper ATPase IstB | - |
| A7E77_RS16560 () | 58570..60081 | - | 1512 | WP_078462179.1 | IS21 family transposase | - |
| A7E77_RS16565 () | 60199..60717 | + | 519 | Protein_69 | PDZ domain-containing protein | - |
| A7E77_RS16570 () | 60711..61130 | - | 420 | WP_007406847.1 | helix-turn-helix domain-containing protein | - |
| A7E77_RS16575 () | 61206..61832 | + | 627 | WP_063690263.1 | cation diffusion facilitator family transporter | - |
| A7E77_RS16580 () | 61832..63799 | + | 1968 | WP_063690266.1 | FTR1 family protein | - |
| A7E77_RS18120 () | 63837..64016 | - | 180 | WP_192930056.1 | hypothetical protein | - |
| A7E77_RS16590 () | 64228..65505 | + | 1278 | WP_017980803.1 | TolC family protein | - |
| A7E77_RS16595 () | 65505..66683 | + | 1179 | WP_004212877.1 | efflux RND transporter periplasmic adaptor subunit | - |
| A7E77_RS16600 () | 66687..69931 | + | 3245 | Protein_76 | CusA/CzcA family heavy metal efflux RND transporter | - |
| A7E77_RS16605 () | 69985..70473 | + | 489 | WP_017980805.1 | polyketide cyclase | - |
| A7E77_RS16610 () | 70470..70844 | + | 375 | WP_024310663.1 | hypothetical protein | - |
| A7E77_RS16615 () | 70890..71231 | + | 342 | WP_017980807.1 | flagellar hook-basal body complex protein FliE | - |
| A7E77_RS16620 () | 71263..72150 | + | 888 | WP_024310664.1 | membrane protein | - |
| A7E77_RS18125 () | 72297..72539 | + | 243 | WP_181814888.1 | hypothetical protein | - |
| A7E77_RS16630 () | 72543..73229 | + | 687 | WP_017980810.1 | transporter | - |
| A7E77_RS16635 () | 73226..73834 | + | 609 | WP_017980811.1 | cation diffusion facilitator family transporter | - |
| A7E77_RS16640 () | 73831..76330 | + | 2500 | Protein_84 | heavy metal translocating P-type ATPase | - |
| A7E77_RS18130 () | 76346..76783 | + | 438 | WP_147276299.1 | hypothetical protein | - |
| A7E77_RS16645 () | 77000..77455 | + | 456 | WP_017980813.1 | MgtC/SapB family protein | - |
| A7E77_RS16650 () | 77554..77930 | + | 377 | Protein_87 | hypothetical protein | - |
| A7E77_RS16655 () | 77943..78551 | + | 609 | WP_017980815.1 | DedA family protein | - |
| A7E77_RS16665 () | 78881..79132 | + | 252 | Protein_89 | DUF159 family protein | - |
| A7E77_RS16670 () | 79141..80432 | - | 1292 | Protein_90 | Fic family protein | - |
| A7E77_RS16675 () | 80435..80692 | - | 258 | WP_017980819.1 | hypothetical protein | - |
| A7E77_RS16680 () | 80820..81205 | - | 386 | Protein_92 | DUF3768 domain-containing protein | - |
| A7E77_RS16685 () | 81537..81812 | + | 276 | WP_024310666.1 | HU family DNA-binding protein | - |
| A7E77_RS17525 () | 81903..82382 | + | 480 | WP_078462361.1 | hypothetical protein | - |
| A7E77_RS16690 () | 82455..82787 | + | 333 | WP_017980823.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| A7E77_RS16695 () | 82799..83242 | + | 444 | WP_017980824.1 | arsenate reductase (glutaredoxin) | - |
| A7E77_RS16700 () | 83247..84326 | + | 1080 | WP_017980825.1 | ACR3 family arsenite efflux transporter | - |
| A7E77_RS16705 () | 84323..84760 | + | 438 | WP_017980826.1 | GNAT family N-acetyltransferase | - |
| A7E77_RS16710 () | 84760..85515 | + | 756 | Protein_99 | arsenical resistance protein ArsH | - |
| A7E77_RS16715 () | 85557..85888 | - | 332 | Protein_100 | YnfA family protein | - |
| A7E77_RS16720 () | 86297..86875 | + | 579 | WP_017980829.1 | response regulator | - |
| A7E77_RS17530 () | 87436..87676 | - | 241 | Protein_102 | hypothetical protein | - |
| A7E77_RS16730 () | 87957..88591 | - | 635 | Protein_103 | hypothetical protein | - |
| A7E77_RS16735 () | 88593..88883 | - | 291 | WP_063690275.1 | hypothetical protein | - |
| A7E77_RS16745 () | 90064..90486 | - | 423 | WP_020486653.1 | hypothetical protein | - |
| A7E77_RS17535 () | 90483..91563 | - | 1081 | Protein_106 | Fic family protein | - |
| A7E77_RS16755 () | 91918..93354 | - | 1437 | WP_192930054.1 | AAA family ATPase | - |
| A7E77_RS16760 () | 93330..93803 | - | 474 | WP_192930055.1 | AAA family ATPase | - |
| A7E77_RS16765 () | 93818..94810 | - | 993 | WP_078462363.1 | relaxase domain-containing protein | - |
| A7E77_RS16775 () | 94905..95717 | - | 813 | WP_017980687.1 | hypothetical protein | - |
| A7E77_RS16780 () | 95714..96031 | - | 318 | WP_017980688.1 | hypothetical protein | - |
| A7E77_RS16785 () | 96366..96749 | - | 384 | WP_017980689.1 | hypothetical protein | - |
| A7E77_RS16790 () | 96746..96988 | - | 243 | WP_017980690.1 | hypothetical protein | - |
| A7E77_RS16795 () | 96985..97320 | - | 336 | WP_017980691.1 | hypothetical protein | - |
| A7E77_RS16800 () | 97317..97712 | - | 396 | WP_017980692.1 | hypothetical protein | - |
| A7E77_RS16805 () | 97726..98601 | - | 876 | WP_151895510.1 | hypothetical protein | - |
| A7E77_RS16810 () | 98764..99186 | - | 423 | WP_063690297.1 | hypothetical protein | - |
| A7E77_RS16815 () | 99183..99761 | - | 579 | WP_017980695.1 | hypothetical protein | - |
| A7E77_RS16820 () | 99826..100107 | + | 282 | WP_078462365.1 | helix-turn-helix domain-containing protein | - |
| A7E77_RS16825 () | 100673..100882 | - | 210 | WP_063690300.1 | hypothetical protein | - |
| A7E77_RS16830 () | 101285..102475 | - | 1191 | WP_017980698.1 | replication initiator protein A | - |
| A7E77_RS16835 () | 102555..103610 | - | 1056 | WP_017980699.1 | ParB/RepB/Spo0J family partition protein | - |
| A7E77_RS16840 () | 103678..104806 | - | 1129 | Protein_123 | AAA family ATPase | - |
| A7E77_RS16845 () | 104948..105340 | + | 393 | Protein_124 | site-specific DNA-methyltransferase | - |
| A7E77_RS16855 () | 105419..106518 | + | 1100 | WP_151895511.1 | IS3 family transposase | - |
| A7E77_RS16860 () | 106652..106960 | + | 309 | WP_017980705.1 | DUF1778 domain-containing protein | - |
| A7E77_RS16865 () | 106957..107511 | + | 555 | WP_017980706.1 | GNAT family N-acetyltransferase | - |
| A7E77_RS16870 () | 107965..110930 | - | 2966 | Protein_128 | Tn3 family transposase | - |
| A7E77_RS16875 () | 111097..111651 | + | 555 | WP_063690394.1 | recombinase family protein | - |
| A7E77_RS16880 () | 112770..114020 | + | 1251 | WP_078462366.1 | MBL fold metallo-hydrolase | - |
| A7E77_RS16885 () | 114031..114405 | + | 375 | WP_063690307.1 | hypothetical protein | - |
| A7E77_RS16890 () | 114770..115435 | - | 666 | WP_017980708.1 | sensor histidine kinase | - |
| A7E77_RS16895 () | 115432..115710 | - | 279 | WP_151895512.1 | helix-turn-helix domain-containing protein | - |
| A7E77_RS16900 () | 115966..117477 | + | 1512 | WP_078462179.1 | IS21 family transposase | - |
| A7E77_RS16905 () | 117464..118192 | + | 729 | WP_062127353.1 | IS21-like element helper ATPase IstB | - |
| A7E77_RS16910 () | 118296..118733 | - | 438 | WP_063690313.1 | cyclic nucleotide-binding domain-containing protein | - |
| A7E77_RS18135 () | 118726..118893 | - | 168 | WP_181814892.1 | hypothetical protein | - |
| A7E77_RS16930 () | 120322..121104 | - | 783 | WP_063690318.1 | DUF5131 family protein | - |
| A7E77_RS16935 () | 121277..121738 | - | 462 | WP_063690320.1 | type II toxin-antitoxin system VapC family toxin | - |
| A7E77_RS16940 () | 121731..121978 | - | 248 | Protein_141 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| A7E77_RS16945 () | 122210..122863 | + | 654 | WP_037477043.1 | recombinase family protein | - |
| A7E77_RS16950 () | 122915..123496 | + | 582 | WP_018251168.1 | ANTAR domain-containing protein | - |
| A7E77_RS16955 () | 123493..124701 | + | 1209 | WP_018251169.1 | ABC transporter substrate-binding protein | - |
| A7E77_RS16960 () | 124908..126149 | + | 1242 | WP_018251170.1 | NarK/NasA family nitrate transporter | - |
| A7E77_RS16965 () | 126225..127430 | + | 1206 | WP_018251171.1 | hypothetical protein | - |
| A7E77_RS16970 () | 127618..130155 | + | 2538 | WP_018251172.1 | nitrite reductase large subunit NirB | - |
| A7E77_RS16975 () | 130152..130490 | + | 339 | WP_018251173.1 | nitrite reductase small subunit NirD | - |
| A7E77_RS16980 () | 130492..133086 | + | 2595 | WP_018251174.1 | nitrate reductase | - |
| A7E77_RS16985 () | 133079..133864 | + | 786 | WP_018251175.1 | uroporphyrinogen-III C-methyltransferase | - |
| A7E77_RS16990 () | 134213..134851 | + | 639 | WP_063690399.1 | recombinase family protein | - |
| A7E77_RS16995 () | 135221..138588 | - | 3368 | Protein_152 | UvrD-helicase domain-containing protein | - |
| A7E77_RS17000 () | 138588..141309 | - | 2722 | Protein_153 | PD-(D/E)XK nuclease family protein | - |
| A7E77_RS17005 () | 141451..141804 | + | 354 | WP_063690323.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| A7E77_RS17010 () | 141816..142136 | + | 321 | WP_063690326.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| A7E77_RS17015 () | 142210..143403 | + | 1194 | WP_078462367.1 | hypothetical protein | - |
| A7E77_RS17020 () | 143531..145240 | + | 1710 | WP_063690328.1 | phospholipase D family protein | - |
| A7E77_RS17025 () | 145237..148989 | + | 3753 | WP_063690330.1 | hypothetical protein | - |
| A7E77_RS17030 () | 148986..149405 | + | 420 | WP_063690332.1 | hypothetical protein | - |
| A7E77_RS17035 () | 149592..150245 | + | 654 | WP_063690335.1 | recombinase family protein | - |
| A7E77_RS17040 () | 150381..151049 | - | 669 | WP_078462368.1 | TetR/AcrR family transcriptional regulator | - |
| A7E77_RS17045 () | 151135..152205 | + | 1071 | WP_192930058.1 | catalase family protein | - |
| A7E77_RS17050 () | 152228..152922 | + | 695 | Protein_163 | hypothetical protein | - |
| A7E77_RS17055 () | 152922..154295 | + | 1374 | WP_063690341.1 | hypothetical protein | - |
| A7E77_RS17540 () | 154297..154746 | + | 450 | WP_069319930.1 | thioesterase family protein | - |
| A7E77_RS17065 () | 154743..155906 | + | 1164 | WP_063690347.1 | patatin-like phospholipase family protein | - |
| A7E77_RS17070 () | 155997..157469 | + | 1473 | WP_078462375.1 | TolC family protein | - |
| A7E77_RS17075 () | 157456..158481 | + | 1026 | WP_078462369.1 | HlyD family secretion protein | - |
| A7E77_RS17080 () | 158490..159616 | + | 1127 | Protein_169 | ABC transporter permease | - |
| A7E77_RS17085 () | 159613..160707 | + | 1095 | WP_063690355.1 | ABC transporter permease | - |
| A7E77_RS17090 () | 160894..162225 | - | 1332 | WP_063690357.1 | HAMP domain-containing protein | - |
| A7E77_RS17095 () | 162228..162905 | - | 678 | WP_063690408.1 | response regulator transcription factor | - |
| A7E77_RS17100 () | 162913..164288 | - | 1376 | Protein_173 | TolC family protein | - |
| A7E77_RS17105 () | 164285..167406 | - | 3122 | Protein_174 | efflux RND transporter permease subunit | - |
| A7E77_RS17110 () | 167406..168383 | - | 978 | WP_063690359.1 | hypothetical protein | - |
| A7E77_RS17115 () | 168499..169152 | - | 654 | WP_063690362.1 | DedA family protein | - |
| A7E77_RS18140 () | 169238..169453 | - | 216 | WP_063690365.1 | hypothetical protein | - |
| A7E77_RS17125 () | 169647..169865 | - | 219 | WP_151895516.1 | hypothetical protein | - |
| A7E77_RS17545 () | 169905..170600 | - | 696 | WP_078462370.1 | phosphatase PAP2 family protein | - |
| A7E77_RS17130 () | 170615..171592 | - | 978 | WP_192930059.1 | gluconolactonase | - |
| A7E77_RS17135 () | 171622..174695 | - | 3074 | Protein_181 | efflux RND transporter permease subunit | - |
| A7E77_RS17140 () | 174695..175716 | - | 1022 | Protein_182 | efflux RND transporter periplasmic adaptor subunit | - |
| A7E77_RS17145 () | 175734..177040 | - | 1307 | Protein_183 | TolC family protein | - |
| A7E77_RS17150 () | 177139..177453 | - | 315 | WP_063690375.1 | PepSY domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|