MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 140210 bp
Accession: NZ_CP015240 Location: 1126216..1266425 Organism: Escherichia coli strain 2011C-3911 Replicon: chromosome
Accession: NZ_CP015240 Location: 1126216..1266425 Organism: Escherichia coli strain 2011C-3911 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A5956_RS06155 () | 1121518..1122258 | - | 741 | WP_001367953.1 | porin family protein | - |
| A5956_RS06160 () | 1122646..1124472 | + | 1827 | WP_001106664.1 | two-component system sensor histidine kinase AtoS | - |
| A5956_RS06165 () | 1124469..1125854 | + | 1386 | WP_000125284.1 | acetoacetate metabolism transcriptional regulator AtoC | - |
| A5956_RS06170 () | 1126050..1126712 | + | 663 | WP_000850528.1 | acetate CoA-transferase subunit alpha | - |
| A5956_RS06175 () | 1126712..1127362 | + | 651 | WP_000339054.1 | acetate CoA-transferase subunit beta | - |
| A5956_RS06180 () | 1127359..1128681 | + | 1323 | WP_000580275.1 | TIGR00366 family protein | - |
| A5956_RS06185 () | 1128712..1129896 | + | 1185 | WP_000786522.1 | acetyl-CoA acetyltransferase | - |
| A5956_RS25230 () | 1130306..1130962 | - | 657 | Protein_1058 | IS66 family transposase ISEc23 | Transposase |
| A5956_RS27215 () | 1132051..1132230 | + | 180 | WP_071531291.1 | hypothetical protein | - |
| A5956_RS06205 () | 1132282..1132475 | + | 194 | Protein_1060 | hypothetical protein | - |
| A5956_RS27220 () | 1133296..1133632 | - | 337 | Protein_1061 | hypothetical protein | - |
| A5956_RS27225 () | 1134308..1134523 | - | 216 | Protein_1062 | hypothetical protein | - |
| A5956_RS06230 () | 1135977..1138064 | + | 2088 | WP_001223358.1 | bifunctional siderophore receptor/adhesin Iha | - |
| A5956_RS26640 () | 1138205..1138396 | - | 192 | Protein_1064 | IS256 family transposase ISEic2 | Transposase |
| A5956_RS06240 () | 1138410..1140246 | - | 1837 | Protein_1065 | Vitamin B12 transporter BtuB | VF |
| A5956_RS06250 () | 1141147..1141404 | - | 258 | WP_001032733.1 | hypothetical protein | - |
| A5956_RS06255 () | 1141473..1143170 | - | 1698 | WP_000401036.1 | sulfatase | - |
| A5956_RS06260 () | 1143265..1144401 | - | 1137 | WP_001228923.1 | Outer membrane porin protein OmpD | VF |
| A5956_RS06265 () | 1145077..1145285 | + | 209 | Protein_1069 | IS66 family insertion sequence element accessory protein TnpB | - |
| A5956_RS27235 () | 1145272..1145584 | + | 313 | Protein_1070 | IS66 family insertion sequence element accessory protein TnpB | - |
| A5956_RS06280 () | 1146538..1147275 | + | 738 | WP_000634448.1 | AraC family transcriptional regulator | - |
| A5956_RS06285 () | 1148174..1152268 | + | 4095 | WP_032326815.1 | Serine protease SepA autotransporter | VF |
| A5956_RS06295 () | 1152774..1153139 | + | 366 | WP_000997724.1 | hypothetical protein | - |
| A5956_RS06300 () | 1153149..1153340 | + | 192 | WP_000264910.1 | hypothetical protein | - |
| A5956_RS06305 () | 1153374..1153583 | + | 210 | WP_000323309.1 | hypothetical protein | - |
| A5956_RS06310 () | 1153610..1153930 | - | 321 | Protein_1076 | IS66 family transposase ISCro1 | Transposase |
| A5956_RS06315 () | 1153982..1154659 | + | 678 | WP_032327097.1 | IS66 family transposase ISCro1 | Transposase |
| A5956_RS06320 () | 1154659..1155006 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| A5956_RS06325 () | 1155026..1156597 | + | 1572 | WP_000381335.1 | IS66 family transposase ISCro1 | Transposase |
| A5956_RS06330 () | 1156788..1157432 | - | 645 | WP_001376509.1 | hypothetical protein | - |
| A5956_RS06335 () | 1157453..1157722 | - | 270 | WP_000226517.1 | PerC family transcriptional regulator | - |
| A5956_RS06340 () | 1157801..1158439 | - | 639 | WP_000502848.1 | ParB N-terminal domain-containing protein | - |
| A5956_RS06345 () | 1158424..1159656 | - | 1233 | WP_001285503.1 | phosphoadenosine phosphosulfate reductase | - |
| A5956_RS06350 () | 1160156..1162837 | - | 2682 | WP_000256226.1 | DUF2726 domain-containing protein | - |
| A5956_RS06360 () | 1163078..1163903 | - | 826 | Protein_1085 | hypothetical protein | VF |
| A5956_RS06370 () | 1164328..1166073 | - | 1746 | WP_024177317.1 | NERD domain-containing protein | - |
| A5956_RS06375 () | 1166251..1166799 | - | 549 | WP_021293029.1 | Attachment invasion locus protein | VF |
| A5956_RS27250 () | 1167368..1167682 | - | 315 | WP_000931686.1 | hypothetical protein | - |
| A5956_RS06385 () | 1167786..1168022 | - | 237 | WP_000500956.1 | hypothetical protein | - |
| A5956_RS06390 () | 1168009..1177122 | - | 9114 | WP_064055993.1 | 16S rRNA endonuclease CdiA | VF |
| A5956_RS06395 () | 1177138..1177665 | - | 528 | WP_001243916.1 | Leukotoxin-activating lysine-acyltransferase LtxC | VF |
| A5956_RS06400 () | 1177675..1179327 | - | 1653 | WP_001376511.1 | ShlB/FhaC/HecB family hemolysin secretion/activation protein | - |
| A5956_RS06405 () | 1180003..1180194 | + | 192 | WP_001287885.1 | DUF4222 domain-containing protein | - |
| A5956_RS06410 () | 1180247..1180480 | - | 234 | WP_000124190.1 | hypothetical protein | - |
| A5956_RS06415 () | 1180576..1181199 | - | 624 | WP_001367955.1 | hypothetical protein | - |
| A5956_RS06420 () | 1181288..1181785 | - | 498 | WP_021552435.1 | hypothetical protein | - |
| A5956_RS06425 () | 1182135..1182542 | - | 408 | WP_072095404.1 | inovirus-type Gp2 protein | - |
| A5956_RS25275 () | 1182723..1182920 | - | 198 | WP_001367978.1 | inovirus-type Gp2 protein | - |
| A5956_RS06430 () | 1183004..1183264 | + | 261 | Protein_1099 | IS3 family transposase ISSfl10 | Transposase |
| A5956_RS06435 () | 1183329..1184480 | + | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| A5956_RS06440 () | 1184487..1185383 | + | 897 | Protein_1101 | IS3 family transposase ISSd1 | Transposase |
| A5956_RS06445 () | 1185657..1186082 | - | 426 | WP_001013311.1 | hypothetical protein | - |
| A5956_RS06450 () | 1186079..1186462 | - | 384 | WP_000271013.1 | hypothetical protein | - |
| A5956_RS06455 () | 1186723..1187292 | - | 570 | WP_000221481.1 | inovirus Gp2 family protein | - |
| A5956_RS06470 () | 1188039..1188188 | - | 150 | WP_071528427.1 | hemolysin activation protein | - |
| A5956_RS06475 () | 1188940..1189146 | + | 207 | WP_000632607.1 | AlpA family transcriptional regulator | - |
| A5956_RS06480 () | 1189227..1189517 | + | 291 | Protein_1107 | malate transporter | - |
| A5956_RS06495 () | 1189590..1190767 | + | 1178 | WP_085968792.1 | IS3 family transposase ISCfr6 | Transposase |
| A5956_RS06500 () | 1190788..1191096 | + | 309 | WP_000889293.1 | hypothetical protein | - |
| A5956_RS06505 () | 1191418..1192902 | - | 1485 | WP_001297234.1 | DUF3987 domain-containing protein | - |
| A5956_RS06510 () | 1194132..1195004 | + | 873 | WP_001069680.1 | GTPase family protein | - |
| A5956_RS06515 () | 1195332..1198451 | + | 3120 | WP_032326872.1 | autotransporter adhesin Ag43 | - |
| A5956_RS06520 () | 1198572..1201088 | + | 2517 | WP_032326871.1 | hypothetical protein | - |
| A5956_RS06525 () | 1201164..1201619 | + | 456 | WP_000581507.1 | hypothetical protein | - |
| A5956_RS06530 () | 1201698..1201931 | + | 234 | WP_001119729.1 | DUF905 family protein | - |
| A5956_RS06535 () | 1202031..1202849 | + | 819 | WP_001234626.1 | DUF945 domain-containing protein | - |
| A5956_RS06540 () | 1202904..1203389 | + | 486 | WP_032326869.1 | antirestriction protein | - |
| A5956_RS06545 () | 1203405..1203881 | + | 477 | WP_001186726.1 | RadC family protein | - |
| A5956_RS06550 () | 1203944..1204165 | + | 222 | WP_000692329.1 | DUF987 domain-containing protein | - |
| A5956_RS06560 () | 1204328..1204702 | + | 375 | WP_001280952.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| A5956_RS06565 () | 1204749..1205126 | + | 378 | WP_000854902.1 | TA system toxin CbtA family protein | Toxin Detail |
| A5956_RS06570 () | 1205123..1205611 | + | 489 | WP_000779175.1 | hypothetical protein | - |
| A5956_RS06575 () | 1205623..1205820 | + | 198 | WP_000839249.1 | DUF957 domain-containing protein | - |
| A5956_RS06580 () | 1205905..1206747 | + | 843 | WP_001280537.1 | DUF4942 domain-containing protein | - |
| A5956_RS06585 () | 1207090..1207626 | - | 537 | WP_000942795.1 | Type II secretion system protein M | VF |
| A5956_RS06590 () | 1207628..1208806 | - | 1179 | WP_000094974.1 | Type II secretion system protein L | VF |
| A5956_RS06595 () | 1208803..1209780 | - | 978 | WP_000633238.1 | Putative type II secretion system protein K | VF |
| A5956_RS06600 () | 1209783..1210382 | - | 600 | WP_001255040.1 | Type II secretion system protein J | VF |
| A5956_RS06605 () | 1210379..1210750 | - | 372 | WP_000820125.1 | Type II secretion system protein I | VF |
| A5956_RS06610 () | 1210747..1211310 | - | 564 | WP_001115140.1 | Type II secretion system protein H | VF |
| A5956_RS06615 () | 1211314..1211769 | - | 456 | WP_001087285.1 | Type II secretion system protein G | VF |
| A5956_RS06620 () | 1211786..1213009 | - | 1224 | WP_001173395.1 | Type II secretion system protein F | VF |
| A5956_RS06625 () | 1213009..1214502 | - | 1494 | WP_000249322.1 | Type II secretion system protein E | VF |
| A5956_RS06630 () | 1214502..1216562 | - | 2061 | WP_000498816.1 | Type II secretion system protein D | VF |
| A5956_RS06635 () | 1216592..1217551 | - | 960 | WP_000135063.1 | Type II secretion system protein C | VF |
| A5956_RS06640 () | 1217569..1217979 | - | 411 | WP_001324279.1 | type II secretion system pilot lipoprotein GspS-beta | - |
| A5956_RS06645 () | 1218045..1218854 | - | 810 | WP_001351318.1 | Leader peptidase PppA | VF |
| A5956_RS06650 () | 1218994..1223559 | - | 4566 | WP_001034523.1 | hypothetical protein | VF |
| A5956_RS06660 () | 1224045..1225727 | - | 1683 | WP_000259303.1 | glycolate permease GlcA | - |
| A5956_RS06665 () | 1226083..1228254 | - | 2172 | WP_000084057.1 | malate synthase G | - |
| A5956_RS06670 () | 1228276..1228680 | - | 405 | WP_000853256.1 | protein GlcG | - |
| A5956_RS06675 () | 1228685..1229908 | - | 1224 | WP_001194664.1 | glycolate oxidase subunit GlcF | - |
| A5956_RS06680 () | 1229919..1230971 | - | 1053 | WP_000943059.1 | glycolate oxidase subunit GlcE | - |
| A5956_RS06685 () | 1230971..1232470 | - | 1500 | WP_000026117.1 | glycolate oxidase subunit GlcD | - |
| A5956_RS06690 () | 1232721..1233485 | + | 765 | WP_001297764.1 | transcriptional regulator GlcC | - |
| A5956_RS06695 () | 1233492..1234634 | - | 1143 | WP_000388786.1 | DNA-binding protein | - |
| A5956_RS06700 () | 1235005..1236726 | + | 1722 | WP_001390306.1 | 4-hydroxyphenylalkanoate adenylyltransferase | VF |
| A5956_RS06705 () | 1236723..1237637 | + | 915 | WP_001077177.1 | NAD-dependent epimerase/dehydratase family protein | - |
| A5956_RS06710 () | 1237669..1237917 | + | 249 | WP_000248097.1 | acyl carrier protein | - |
| A5956_RS06715 () | 1237917..1239089 | + | 1173 | WP_000524972.1 | 8-amino-7-oxononanoate synthase | VF |
| A5956_RS06720 () | 1239125..1240204 | - | 1080 | WP_001300858.1 | LPS export ABC transporter permease LptG | - |
| A5956_RS06725 () | 1240201..1241271 | - | 1071 | WP_000779644.1 | LPS export ABC transporter permease LptF | - |
| A5956_RS06730 () | 1241301..1241861 | - | 561 | WP_001351319.1 | YtfJ family protein | - |
| A5956_RS06735 () | 1241873..1242697 | - | 825 | WP_000984976.1 | hypothetical protein | - |
| A5956_RS06740 () | 1242697..1244046 | - | 1350 | WP_000896885.1 | lipopolysaccharide biosynthesis protein | - |
| A5956_RS06745 () | 1244092..1244850 | - | 759 | WP_000339513.1 | hypothetical protein | - |
| A5956_RS06750 () | 1244882..1245595 | - | 714 | WP_001076231.1 | thymidylate kinase | - |
| A5956_RS06755 () | 1245769..1246461 | + | 693 | WP_001190779.1 | thymidylate kinase | - |
| A5956_RS06760 () | 1246515..1248014 | - | 1500 | WP_000933272.1 | inorganic phosphate transporter PitB | - |
| A5956_RS06765 () | 1248306..1250165 | - | 1860 | WP_001297309.1 | bifunctional glutathionylspermidine amidase/synthase | - |
| A5956_RS06770 () | 1250370..1251236 | + | 867 | WP_001298746.1 | glutathione-dependent disulfide-bond oxidoreductase | - |
| A5956_RS06775 () | 1251536..1252516 | + | 981 | WP_000399648.1 | IS110 family transposase IS621 | Transposase |
| A5956_RS06780 () | 1252638..1252886 | - | 249 | WP_000334896.1 | hydrogenase maturation factor HybG | - |
| A5956_RS06785 () | 1252899..1253240 | - | 342 | WP_000544953.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| A5956_RS06790 () | 1253233..1253721 | - | 489 | WP_000134014.1 | hydrogenase-2 assembly chaperone | - |
| A5956_RS06795 () | 1253714..1254208 | - | 495 | WP_001221953.1 | HyaD/HybD family hydrogenase maturation endopeptidase | - |
| A5956_RS06800 () | 1254208..1255911 | - | 1704 | WP_000083065.1 | hydrogenase 2 large subunit | - |
| A5956_RS06805 () | 1255908..1257086 | - | 1179 | WP_000017680.1 | Ni/Fe-hydrogenase cytochrome b subunit | - |
| A5956_RS06810 () | 1257076..1258062 | - | 987 | WP_001081870.1 | hydrogenase 2 operon protein HybA | - |
| A5956_RS06815 () | 1258065..1259183 | - | 1119 | WP_000145410.1 | hydrogenase 2 small subunit | - |
| A5956_RS06825 () | 1259372..1259659 | - | 288 | WP_001059136.1 | DUF2623 domain-containing protein | - |
| A5956_RS06830 () | 1259778..1260665 | - | 888 | WP_001297303.1 | dienelactone hydrolase family protein | - |
| A5956_RS06835 () | 1260822..1261862 | + | 1041 | WP_000262154.1 | L-glyceraldehyde 3-phosphate reductase | - |
| A5956_RS06840 () | 1261902..1262396 | - | 495 | WP_000439331.1 | TIGR00645 family protein | - |
| A5956_RS06845 () | 1262587..1263471 | + | 885 | WP_000018760.1 | putative oxidoreductase YghA | VF |
| A5956_RS06850 () | 1263510..1263935 | - | 426 | WP_001240712.1 | TonB system transport protein ExbD | - |
| A5956_RS06855 () | 1263942..1264676 | - | 735 | WP_000527844.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| A5956_RS06865 () | 1264928..1266115 | + | 1188 | WP_001315867.1 | cystathionine beta-lyase | - |
| A5956_RS06870 () | 1266255..1266914 | + | 660 | WP_000268419.1 | DedA family protein | - |
| A5956_RS06875 () | 1266954..1267853 | - | 900 | WP_001298382.1 | DNA-binding transcriptional regulator YqhC | - |
| A5956_RS06885 () | 1268047..1269210 | + | 1164 | WP_001058807.1 | alcohol dehydrogenase | - |
| A5956_RS06890 () | 1269315..1270142 | + | 828 | WP_000013149.1 | 2,5-didehydrogluconate reductase DkgA | - |
| A5956_RS06895 () | 1270342..1271268 | + | 927 | WP_000691598.1 | YbjP/YqhG family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|