MGE detailed information
MGE type: Prophage MGE length: 57279 bp
Accession: NZ_CP015228 Location: 1976333..2033611 Organism: Escherichia coli strain 09-00049 Replicon: chromosome
Accession: NZ_CP015228 Location: 1976333..2033611 Organism: Escherichia coli strain 09-00049 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJ12_RS11325 () | 1971928..1972131 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| GJ12_RS11330 () | 1972167..1973627 | - | 1461 | WP_000527797.1 | mannitol dehydrogenase family protein | - |
| GJ12_RS11335 () | 1973716..1974999 | - | 1284 | Protein_1939 | MHS family MFS transporter YdfJ | - |
| GJ12_RS31285 () | 1975601..1975714 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| GJ12_RS11340 () | 1975783..1976016 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| GJ12_RS11345 () | 1976333..1976923 | + | 591 | WP_000086522.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| GJ12_RS11350 () | 1977021..1977596 | - | 576 | WP_000885614.1 | tail fiber assembly protein | - |
| GJ12_RS11355 () | 1977596..1980994 | - | 3399 | WP_065225633.1 | prophage tail fiber N-terminal domain-containing protein | - |
| GJ12_RS11360 () | 1981059..1981658 | - | 600 | WP_001233167.1 | Outer membrane protein X | VF |
| GJ12_RS11365 () | 1981726..1985121 | - | 3396 | WP_065225634.1 | host specificity protein J | - |
| GJ12_RS11370 () | 1985182..1985829 | - | 648 | WP_073972164.1 | tail assembly protein | - |
| GJ12_RS11375 () | 1985727..1986470 | - | 744 | WP_000140707.1 | C40 family peptidase | - |
| GJ12_RS11380 () | 1986475..1987173 | - | 699 | WP_001152368.1 | phage minor tail protein L | - |
| GJ12_RS11385 () | 1987183..1987512 | - | 330 | WP_000447251.1 | phage tail protein | - |
| GJ12_RS11390 () | 1987512..1990577 | - | 3066 | WP_065225635.1 | phage tail tape measure protein | - |
| GJ12_RS11395 () | 1990549..1990878 | - | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| GJ12_RS11400 () | 1990887..1991273 | - | 387 | WP_001384509.1 | phage minor tail protein G | - |
| GJ12_RS11405 () | 1991334..1992077 | - | 744 | WP_000211131.1 | phage tail protein | - |
| GJ12_RS11410 () | 1992088..1992489 | - | 402 | WP_001079398.1 | phage minor tail U family protein | - |
| GJ12_RS11415 () | 1992486..1993064 | - | 579 | WP_061892320.1 | phage tail protein | - |
| GJ12_RS11420 () | 1993076..1993351 | - | 276 | WP_024207680.1 | DNA breaking-rejoining protein | - |
| GJ12_RS11425 () | 1993344..1993667 | - | 324 | WP_001097041.1 | DUF2190 family protein | - |
| GJ12_RS11430 () | 1993754..1995781 | - | 2028 | WP_001136588.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| GJ12_RS11435 () | 1995726..1997234 | - | 1509 | WP_021542121.1 | phage portal protein | - |
| GJ12_RS11440 () | 1997234..1997446 | - | 213 | WP_021545871.1 | hypothetical protein | - |
| GJ12_RS11445 () | 1997443..1999542 | - | 2100 | WP_000507029.1 | phage terminase large subunit family protein | - |
| GJ12_RS11450 () | 1999551..2000090 | - | 540 | WP_000421825.1 | DUF1441 family protein | - |
| GJ12_RS11455 () | 2000641..2000847 | - | 207 | WP_000548593.1 | hypothetical protein | - |
| GJ12_RS11460 () | 2001143..2001316 | - | 174 | WP_001019207.1 | addiction module toxin, GnsA/GnsB family | - |
| GJ12_RS11465 () | 2001489..2001644 | - | 156 | WP_001443523.1 | hypothetical protein | - |
| GJ12_RS29110 () | 2001792..2001980 | - | 189 | WP_071526745.1 | cold-shock protein | - |
| GJ12_RS11470 () | 2001991..2002203 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| GJ12_RS11475 () | 2002567..2003064 | - | 498 | WP_001071776.1 | DUF2514 domain-containing protein | - |
| GJ12_RS11480 () | 2003061..2003594 | - | 534 | WP_001092966.1 | lysozyme | - |
| GJ12_RS11485 () | 2003591..2003902 | - | 312 | WP_000189918.1 | DUF1327 domain-containing protein | - |
| GJ12_RS11490 () | 2003907..2004122 | - | 216 | WP_000839562.1 | phage lysis protein EssD | - |
| GJ12_RS11495 () | 2004374..2004748 | - | 375 | WP_001348108.1 | hypothetical protein | - |
| GJ12_RS11500 () | 2004920..2005348 | - | 429 | WP_000506936.1 | cell envelope integrity protein TolA | - |
| GJ12_RS31290 () | 2005715..2005846 | - | 132 | WP_047626566.1 | DUF3927 family protein | - |
| GJ12_RS11525 () | 2006742..2007563 | - | 822 | WP_000762885.1 | antitermination protein | - |
| GJ12_RS11530 () | 2007578..2007934 | - | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| GJ12_RS11535 () | 2007947..2008996 | - | 1050 | WP_053292618.1 | DUF968 domain-containing protein | - |
| GJ12_RS11540 () | 2008998..2009276 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| GJ12_RS11545 () | 2009343..2009594 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| GJ12_RS11550 () | 2009811..2009966 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| GJ12_RS11555 () | 2010038..2010325 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| GJ12_RS11560 () | 2010325..2010564 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| GJ12_RS29115 () | 2010589..2010894 | + | 306 | WP_071527819.1 | hypothetical protein | - |
| GJ12_RS11565 () | 2011097..2011429 | + | 333 | WP_001317460.1 | FlxA-like family protein | - |
| GJ12_RS11570 () | 2011866..2013206 | - | 1341 | WP_000589012.1 | ISNCY family transposase ISCARN112 | Transposase |
| GJ12_RS11575 () | 2013240..2013659 | - | 420 | WP_001151195.1 | DUF977 family protein | - |
| GJ12_RS11580 () | 2013700..2014665 | - | 966 | WP_000054504.1 | hypothetical protein | - |
| GJ12_RS11585 () | 2014646..2015167 | - | 522 | WP_000705349.1 | hypothetical protein | - |
| GJ12_RS11590 () | 2015151..2015378 | - | 228 | WP_000476993.1 | transcriptional regulator | - |
| GJ12_RS11595 () | 2015456..2015863 | + | 408 | WP_001003381.1 | helix-turn-helix domain-containing protein | - |
| GJ12_RS11600 () | 2016056..2016211 | + | 156 | WP_000379589.1 | DUF1391 family protein | - |
| GJ12_RS31295 () | 2016213..2016464 | + | 252 | WP_122986852.1 | hypothetical protein | - |
| GJ12_RS31300 () | 2016451..2016771 | - | 321 | WP_122986851.1 | hypothetical protein | - |
| GJ12_RS11610 () | 2017276..2017464 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| GJ12_RS11615 () | 2017461..2017652 | + | 192 | WP_001083280.1 | lysis protein YdfD | - |
| GJ12_RS11620 () | 2017746..2020217 | + | 2472 | WP_033815598.1 | exonuclease | - |
| GJ12_RS11625 () | 2020290..2020541 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| GJ12_RS11630 () | 2020576..2021856 | + | 1281 | WP_000876979.1 | Putative defective protein IntQ ; Integrase | Integrase |
| GJ12_RS30550 () | 2021876..2021986 | - | 111 | WP_021531328.1 | hypothetical protein | - |
| GJ12_RS11635 () | 2022044..2023063 | - | 1020 | WP_000836079.1 | Zn-dependent oxidoreductase | - |
| GJ12_RS11640 () | 2023075..2024289 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| GJ12_RS11645 () | 2024495..2024821 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| GJ12_RS11650 () | 2024956..2025297 | + | 342 | WP_000705197.1 | DUF1283 family protein | - |
| GJ12_RS11655 () | 2025332..2025892 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| GJ12_RS11660 () | 2025895..2026605 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| GJ12_RS11665 () | 2026713..2027018 | + | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| GJ12_RS11670 () | 2027217..2029643 | + | 2427 | WP_000041534.1 | dimethyl sulfoxide reductase subunit A | - |
| GJ12_RS11675 () | 2029704..2032127 | + | 2424 | WP_077883701.1 | dimethyl sulfoxide reductase subunit A | - |
| GJ12_RS11680 () | 2032138..2032755 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| GJ12_RS11685 () | 2032757..2033611 | + | 855 | WP_000526492.1 | dimethyl sulfoxide reductase anchor subunit | - |
| GJ12_RS11690 () | 2033654..2034268 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| GJ12_RS11695 () | 2034428..2035720 | + | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| GJ12_RS11700 () | 2035673..2036368 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| GJ12_RS11705 () | 2036493..2037713 | - | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|