MGE detailed information
MGE type: Prophage MGE length: 65010 bp
Accession: NZ_CP015194 Location: 1426915..1491924 Organism: Shewanella sp. Pdp11 Replicon: chromosome
Accession: NZ_CP015194 Location: 1426915..1491924 Organism: Shewanella sp. Pdp11 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYJ58_RS06280 () | 1421929..1422672 | - | 744 | WP_106649433.1 | DUF481 domain-containing protein | - |
| AYJ58_RS06285 () | 1422885..1423280 | + | 396 | WP_006083044.1 | 30S ribosomal protein S6 | - |
| AYJ58_RS06290 () | 1423289..1423594 | + | 306 | WP_006083043.1 | primosomal replication protein N | - |
| AYJ58_RS06295 () | 1423607..1423834 | + | 228 | WP_006083042.1 | 30S ribosomal protein S18 | - |
| AYJ58_RS06300 () | 1423871..1424323 | + | 453 | WP_106649434.1 | 50S ribosomal protein L9 | - |
| AYJ58_RS06305 () | 1424591..1426789 | - | 2199 | WP_106649435.1 | S46 family peptidase | - |
| AYJ58_RS06310 () | 1426915..1428321 | + | 1407 | WP_106649436.1 | replicative DNA helicase | - |
| AYJ58_RS06315 () | 1428424..1429500 | + | 1077 | WP_106649437.1 | alanine racemase | - |
| AYJ58_RS06320 () | 1430066..1430530 | - | 465 | WP_006083037.1 | chemotaxis protein CheX | - |
| AYJ58_RS06325 () | 1431086..1433278 | + | 2193 | WP_106649438.1 | TonB-dependent siderophore receptor | - |
| AYJ58_RS06330 () | 1433377..1434051 | + | 675 | WP_106649439.1 | Fe2+-dependent dioxygenase | - |
| AYJ58_RS06335 () | 1434489..1434974 | + | 486 | WP_106649440.1 | hypothetical protein | - |
| AYJ58_RS06340 () | 1435083..1435778 | + | 696 | WP_198555612.1 | hypothetical protein | - |
| AYJ58_RS06345 () | 1436351..1436707 | + | 357 | WP_106649442.1 | hypothetical protein | - |
| AYJ58_RS06350 () | 1436875..1437144 | + | 270 | WP_012586779.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| AYJ58_RS06355 () | 1437141..1437671 | + | 531 | WP_106649443.1 | GNAT family N-acetyltransferase | Toxin Detail |
| AYJ58_RS06360 () | 1438057..1438428 | + | 372 | WP_106649444.1 | DUF2750 domain-containing protein | - |
| AYJ58_RS06365 () | 1438509..1438820 | - | 312 | WP_106649445.1 | hypothetical protein | - |
| AYJ58_RS06370 () | 1438817..1439047 | - | 231 | WP_106649446.1 | hypothetical protein | - |
| AYJ58_RS06375 () | 1439044..1439322 | - | 279 | WP_106649447.1 | hypothetical protein | - |
| AYJ58_RS06380 () | 1439323..1439631 | - | 309 | WP_106649448.1 | hypothetical protein | - |
| AYJ58_RS06385 () | 1439628..1440278 | - | 651 | WP_106649449.1 | hypothetical protein | - |
| AYJ58_RS06390 () | 1440275..1440664 | - | 390 | WP_106649450.1 | hypothetical protein | - |
| AYJ58_RS06395 () | 1440661..1441290 | - | 630 | WP_106649451.1 | hypothetical protein | - |
| AYJ58_RS06400 () | 1441321..1441668 | - | 348 | WP_025007746.1 | hypothetical protein | - |
| AYJ58_RS06405 () | 1441694..1441954 | - | 261 | WP_106649452.1 | pyocin activator PrtN family protein | - |
| AYJ58_RS06410 () | 1441951..1442304 | - | 354 | WP_012196661.1 | hypothetical protein | - |
| AYJ58_RS06415 () | 1442763..1444247 | + | 1485 | WP_106649453.1 | AAA family ATPase | - |
| AYJ58_RS06420 () | 1444237..1444896 | + | 660 | WP_157825767.1 | hypothetical protein | - |
| AYJ58_RS06425 () | 1445856..1446551 | - | 696 | WP_106651757.1 | helix-turn-helix transcriptional regulator | - |
| AYJ58_RS06430 () | 1446638..1446841 | + | 204 | WP_106649455.1 | Cro/Cl family transcriptional regulator | - |
| AYJ58_RS06435 () | 1446873..1447496 | + | 624 | WP_106649456.1 | hypothetical protein | - |
| AYJ58_RS06440 () | 1447502..1447828 | + | 327 | WP_106649457.1 | hypothetical protein | - |
| AYJ58_RS06445 () | 1447999..1448277 | - | 279 | WP_014620853.1 | hypothetical protein | - |
| AYJ58_RS06450 () | 1448436..1449185 | + | 750 | WP_106649458.1 | helix-turn-helix domain-containing protein | - |
| AYJ58_RS06455 () | 1449182..1449868 | + | 687 | WP_106649459.1 | replication protein P | - |
| AYJ58_RS06460 () | 1449858..1451114 | + | 1257 | WP_106649460.1 | hypothetical protein ; Integrase | Integrase |
| AYJ58_RS06465 () | 1451170..1451388 | + | 219 | WP_012586800.1 | helix-turn-helix domain-containing protein | - |
| AYJ58_RS06470 () | 1451375..1451752 | + | 378 | WP_106649461.1 | hypothetical protein | - |
| AYJ58_RS06475 () | 1451761..1452375 | + | 615 | WP_106649462.1 | oligoribonuclease | - |
| AYJ58_RS06480 () | 1453296..1453829 | + | 534 | WP_106649463.1 | lysozyme | - |
| AYJ58_RS06485 () | 1453810..1454313 | + | 504 | WP_106649464.1 | hypothetical protein | - |
| AYJ58_RS06490 () | 1454424..1454780 | + | 357 | WP_106649465.1 | hypothetical protein | - |
| AYJ58_RS06495 () | 1454734..1455267 | + | 534 | WP_106649466.1 | terminase small subunit | - |
| AYJ58_RS06500 () | 1455242..1457239 | + | 1998 | WP_106649467.1 | phage terminase large subunit family protein | - |
| AYJ58_RS06505 () | 1457268..1457474 | + | 207 | WP_106649468.1 | hypothetical protein | - |
| AYJ58_RS06510 () | 1457524..1459098 | + | 1575 | WP_106649469.1 | phage portal protein | - |
| AYJ58_RS06515 () | 1459070..1461079 | + | 2010 | WP_106651759.1 | Clp protease ClpP | - |
| AYJ58_RS06520 () | 1461156..1461479 | + | 324 | WP_106649470.1 | DUF2190 family protein | - |
| AYJ58_RS06525 () | 1461472..1461810 | + | 339 | WP_106649471.1 | hypothetical protein | - |
| AYJ58_RS06530 () | 1461830..1462387 | + | 558 | WP_106649472.1 | hypothetical protein | - |
| AYJ58_RS06535 () | 1462403..1462828 | + | 426 | WP_106649473.1 | hypothetical protein | - |
| AYJ58_RS06540 () | 1462825..1463544 | + | 720 | WP_106649474.1 | hypothetical protein | - |
| AYJ58_RS06545 () | 1463661..1464047 | + | 387 | WP_106649475.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| AYJ58_RS06550 () | 1464031..1464336 | + | 306 | WP_012088290.1 | DNA-binding transcriptional regulator | - |
| AYJ58_RS06555 () | 1464420..1465004 | - | 585 | WP_106649476.1 | Rha family transcriptional regulator | - |
| AYJ58_RS06560 () | 1465489..1469775 | + | 4287 | WP_106649477.1 | phage tail tape measure protein | - |
| AYJ58_RS06565 () | 1469813..1470184 | + | 372 | WP_106649478.1 | hypothetical protein | - |
| AYJ58_RS06570 () | 1470192..1472699 | + | 2508 | WP_106649479.1 | hypothetical protein | - |
| AYJ58_RS06575 () | 1472712..1473659 | + | 948 | WP_106649480.1 | hypothetical protein | - |
| AYJ58_RS06580 () | 1473652..1473957 | + | 306 | WP_106649481.1 | hypothetical protein | - |
| AYJ58_RS06585 () | 1473954..1475714 | + | 1761 | WP_106649482.1 | hypothetical protein | - |
| AYJ58_RS06590 () | 1475740..1475952 | + | 213 | WP_012586821.1 | hypothetical protein | - |
| AYJ58_RS06595 () | 1475962..1476171 | - | 210 | WP_106649483.1 | hypothetical protein | - |
| AYJ58_RS06600 () | 1476194..1477258 | - | 1065 | WP_106651760.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| AYJ58_RS06605 () | 1477380..1478399 | + | 1020 | WP_106649484.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| AYJ58_RS06610 () | 1478611..1478901 | + | 291 | WP_106649485.1 | hypothetical protein | - |
| AYJ58_RS06620 () | 1479046..1479246 | + | 201 | WP_106649486.1 | PspC domain-containing protein | - |
| AYJ58_RS06625 () | 1479369..1480106 | - | 738 | WP_106649487.1 | enoyl-CoA hydratase | - |
| AYJ58_RS06630 () | 1480140..1480622 | + | 483 | WP_106649488.1 | copper chaperone PCu(A)C | - |
| AYJ58_RS06635 () | 1480634..1481602 | + | 969 | WP_106649489.1 | DUF2333 family protein | - |
| AYJ58_RS06640 () | 1481605..1482342 | + | 738 | WP_106649490.1 | TIGR04219 family outer membrane beta-barrel protein | - |
| AYJ58_RS06645 () | 1482429..1483736 | - | 1308 | WP_006083027.1 | outer membrane channel protein TolC | - |
| AYJ58_RS06650 () | 1483981..1484583 | + | 603 | WP_106649491.1 | ADP-ribose diphosphatase | - |
| AYJ58_RS06655 () | 1484590..1485030 | + | 441 | WP_063882262.1 | DUF1249 domain-containing protein | - |
| AYJ58_RS06660 () | 1485046..1485885 | + | 840 | WP_106649492.1 | 3',5'-cyclic-AMP phosphodiesterase | - |
| AYJ58_RS06665 () | 1485912..1486487 | + | 576 | WP_106649493.1 | esterase YqiA | - |
| AYJ58_RS06670 () | 1486544..1488430 | + | 1887 | WP_106649494.1 | DNA topoisomerase IV subunit B | - |
| AYJ58_RS06675 () | 1488483..1489655 | + | 1173 | WP_106649495.1 | PQQ-dependent sugar dehydrogenase | - |
| AYJ58_RS06680 () | 1489648..1491924 | + | 2277 | WP_106649496.1 | DNA topoisomerase IV subunit A | - |
| AYJ58_RS06685 () | 1492099..1493211 | - | 1113 | WP_106649497.1 | porin | - |
| AYJ58_RS06690 () | 1493647..1494711 | - | 1065 | WP_106649498.1 | porin | - |
| AYJ58_RS06695 () | 1495138..1495947 | + | 810 | WP_006083017.1 | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|