MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 131420 bp
Accession: NZ_CP015089 Location: 1..131420 Organism: Pelagibaca abyssi strain JLT2014 Replicon: plasmid pPABY5
Accession: NZ_CP015089 Location: 1..131420 Organism: Pelagibaca abyssi strain JLT2014 Replicon: plasmid pPABY5
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Ga0080574_RS00010 () | 573..1340 | + | 768 | WP_076694144.1 | response regulator transcription factor | - |
| Ga0080574_RS00015 () | 1305..2369 | - | 1065 | WP_076693895.1 | flagellin | - |
| Ga0080574_RS00020 () | 2384..3799 | - | 1416 | WP_076693897.1 | flagellar hook-associated protein FlgK | - |
| Ga0080574_RS00025 () | 3821..5122 | - | 1302 | WP_076693899.1 | Flagellar hook protein FlgE | VF |
| Ga0080574_RS00030 () | 5320..7176 | - | 1857 | WP_156876196.1 | hypothetical protein | - |
| Ga0080574_RS00035 () | 7280..8029 | + | 750 | WP_076693903.1 | Flagellar basal-body rod protein FlgG | VF |
| Ga0080574_RS00040 () | 8045..8830 | + | 786 | WP_076693905.1 | Flagellar basal-body rod protein FlgG | VF |
| Ga0080574_RS00045 () | 8834..9496 | + | 663 | WP_076693907.1 | flagellar basal body P-ring formation protein FlgA | - |
| Ga0080574_RS00050 () | 9493..10254 | + | 762 | WP_076693909.1 | Flagellar L-ring protein | VF |
| Ga0080574_RS00060 () | 10341..10961 | + | 621 | WP_156876199.1 | hypothetical protein | - |
| Ga0080574_RS00065 () | 10972..11640 | - | 669 | WP_076693915.1 | Basal-body rod modification protein FlgD | VF |
| Ga0080574_RS00070 () | 11658..13295 | - | 1638 | WP_076693917.1 | flagellar hook-length control protein FliK | - |
| Ga0080574_RS00075 () | 13292..14038 | - | 747 | WP_076693919.1 | sigma-70 family RNA polymerase sigma factor | - |
| Ga0080574_RS00080 () | 14115..14867 | - | 753 | WP_156876201.1 | hypothetical protein | - |
| Ga0080574_RS00085 () | 15314..16297 | - | 984 | WP_076693923.1 | Chemotaxis protein LafU | VF |
| Ga0080574_RS00090 () | 16312..16728 | - | 417 | WP_076693925.1 | MucR family transcriptional regulator | - |
| Ga0080574_RS00095 () | 16873..17136 | - | 264 | WP_076693927.1 | MucR family transcriptional regulator | - |
| Ga0080574_RS00100 () | 17272..17943 | + | 672 | WP_076693929.1 | helix-turn-helix domain-containing protein | - |
| Ga0080574_RS00105 () | 17944..19794 | - | 1851 | WP_076693932.1 | tetratricopeptide repeat protein | - |
| Ga0080574_RS00110 () | 19791..21140 | - | 1350 | WP_076693934.1 | FkbM family methyltransferase | - |
| Ga0080574_RS26130 () | 21137..22183 | - | 1047 | WP_076693936.1 | hypothetical protein | - |
| Ga0080574_RS00120 () | 22322..23188 | + | 867 | WP_076693938.1 | Motility protein A | VF |
| Ga0080574_RS00125 () | 23185..23439 | + | 255 | WP_076693940.1 | hypothetical protein | - |
| Ga0080574_RS00130 () | 23429..23857 | + | 429 | WP_076693942.1 | flagellar FliJ family protein | - |
| Ga0080574_RS00135 () | 23891..24697 | - | 807 | WP_198039710.1 | ABC transporter permease subunit | - |
| Ga0080574_RS00140 () | 24690..25487 | - | 798 | WP_076693944.1 | Bicarbonate transport ATP-binding protein CmpC | VF |
| Ga0080574_RS00145 () | 25523..26233 | - | 711 | WP_198039711.1 | ABC transporter permease subunit | - |
| Ga0080574_RS00150 () | 26289..27290 | - | 1002 | WP_076693948.1 | ABC transporter substrate-binding protein | - |
| Ga0080574_RS00155 () | 27523..28131 | - | 609 | WP_076693950.1 | flavin reductase family protein | - |
| Ga0080574_RS00160 () | 28172..28807 | - | 636 | WP_076693952.1 | Maleamate amidohydrolase | VF |
| Ga0080574_RS00165 () | 28902..29933 | - | 1032 | WP_076693954.1 | leucyl aminopeptidase | - |
| Ga0080574_RS00170 () | 29969..30760 | - | 792 | WP_076693956.1 | alpha/beta hydrolase | - |
| Ga0080574_RS00175 () | 30771..31472 | - | 702 | WP_156876219.1 | Asp/Glu racemase | - |
| Ga0080574_RS00180 () | 31702..32247 | - | 546 | WP_076693961.1 | flavin reductase family protein | - |
| Ga0080574_RS00185 () | 32320..33957 | - | 1638 | WP_076694146.1 | ABC transporter substrate-binding protein | - |
| Ga0080574_RS00190 () | 34077..35438 | - | 1362 | WP_076693964.1 | LLM class flavin-dependent oxidoreductase | - |
| Ga0080574_RS00195 () | 35899..36819 | + | 921 | WP_076694148.1 | ABC transporter permease | - |
| Ga0080574_RS00200 () | 36816..37685 | + | 870 | WP_076693968.1 | ABC transporter permease | - |
| Ga0080574_RS00205 () | 37685..38674 | + | 990 | WP_076693970.1 | Oligopeptide transport ATP-binding protein OppD | VF |
| Ga0080574_RS00210 () | 38671..39672 | + | 1002 | WP_076693972.1 | Oligopeptide transport ATP-binding protein OppF | VF |
| Ga0080574_RS00215 () | 39669..41051 | + | 1383 | WP_083716687.1 | Multidrug resistance protein 3 | VF |
| Ga0080574_RS00220 () | 41048..42370 | - | 1323 | WP_076693976.1 | LLM class flavin-dependent oxidoreductase | - |
| Ga0080574_RS00225 () | 42394..43617 | - | 1224 | WP_076693978.1 | FAD-dependent monooxygenase | - |
| Ga0080574_RS00230 () | 43919..44578 | + | 660 | WP_076693980.1 | TetR/AcrR family transcriptional regulator | - |
| Ga0080574_RS00235 () | 45122..46912 | + | 1791 | WP_076693981.1 | phosphomethylpyrimidine synthase ThiC | - |
| Ga0080574_RS00240 () | 46909..47844 | + | 936 | WP_076693982.1 | FAD-dependent oxidoreductase | - |
| Ga0080574_RS00245 () | 47834..48031 | + | 198 | WP_076693984.1 | sulfur carrier protein ThiS | - |
| Ga0080574_RS00250 () | 48033..48791 | + | 759 | WP_076693986.1 | thiazole synthase | - |
| Ga0080574_RS00255 () | 48788..49399 | + | 612 | WP_076693988.1 | thiamine phosphate synthase | - |
| Ga0080574_RS00260 () | 49396..50310 | + | 915 | WP_076693990.1 | HesA/MoeB/ThiF family protein | - |
| Ga0080574_RS00265 () | 50477..51760 | + | 1284 | WP_076693992.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| Ga0080574_RS00270 () | 52109..53707 | + | 1599 | WP_076693994.1 | GMC family oxidoreductase N-terminal domain-containing protein | - |
| Ga0080574_RS00275 () | 53747..54820 | + | 1074 | WP_076693996.1 | Spermidine/putrescine import ATP-binding protein PotA | VF |
| Ga0080574_RS00280 () | 54817..55692 | + | 876 | WP_076693998.1 | ABC transporter permease | - |
| Ga0080574_RS00285 () | 55689..56483 | + | 795 | WP_076694000.1 | ABC transporter permease | - |
| Ga0080574_RS00290 () | 56553..57566 | + | 1014 | WP_076694002.1 | extracellular solute-binding protein | - |
| Ga0080574_RS00295 () | 57650..58078 | + | 429 | WP_076694004.1 | RidA family protein | - |
| Ga0080574_RS00300 () | 58083..58757 | + | 675 | WP_076694006.1 | DUF1028 domain-containing protein | - |
| Ga0080574_RS00305 () | 58780..60276 | + | 1497 | WP_076694151.1 | aldehyde dehydrogenase | - |
| Ga0080574_RS00310 () | 60303..61295 | + | 993 | WP_076694008.1 | LysR family transcriptional regulator | - |
| Ga0080574_RS00315 () | 61231..61980 | - | 750 | WP_076694153.1 | LuxR family transcriptional regulator | - |
| Ga0080574_RS00320 () | 62168..63517 | + | 1350 | WP_076694010.1 | aminotransferase class III-fold pyridoxal phosphate-dependent enzyme | - |
| Ga0080574_RS00325 () | 63542..64687 | + | 1146 | WP_076694012.1 | acetylornithine deacetylase | - |
| Ga0080574_RS00330 () | 64793..65020 | + | 228 | WP_076694014.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
| Ga0080574_RS00335 () | 65021..65410 | + | 390 | WP_076694016.1 | type II toxin-antitoxin system VapC family toxin | - |
| Ga0080574_RS00340 () | 65415..66542 | - | 1128 | WP_076694017.1 | Flagellar biosynthetic protein FlhB | VF |
| Ga0080574_RS00345 () | 66546..67301 | - | 756 | WP_076694019.1 | hypothetical protein | VF |
| Ga0080574_RS00350 () | 67302..69398 | - | 2097 | WP_083716688.1 | Flagellar biosynthesis protein FlhA | VF |
| Ga0080574_RS00355 () | 69398..70198 | - | 801 | WP_076694021.1 | hypothetical protein | VF |
| Ga0080574_RS00360 () | 70198..70467 | - | 270 | WP_076694023.1 | hypothetical protein | VF |
| Ga0080574_RS00365 () | 70496..70822 | - | 327 | WP_076694025.1 | Flagellar hook-basal body complex protein FliE | VF |
| Ga0080574_RS00370 () | 70834..71244 | - | 411 | WP_076694027.1 | Flagellar basal-body rod protein FlgC | VF |
| Ga0080574_RS00375 () | 71255..71656 | - | 402 | WP_076694029.1 | flagellar biosynthesis protein FlgB | - |
| Ga0080574_RS00380 () | 71724..73061 | + | 1338 | WP_076694031.1 | putative ATP synthase YscN | VF |
| Ga0080574_RS00385 () | 73272..74456 | + | 1185 | WP_076694033.1 | plasmid partitioning protein RepA | - |
| Ga0080574_RS00390 () | 74456..75424 | + | 969 | WP_076694035.1 | plasmid partitioning protein RepB | - |
| Ga0080574_RS00395 () | 75606..76967 | + | 1362 | WP_083716689.1 | replication protein C | - |
| Ga0080574_RS00400 () | 77583..78443 | - | 861 | WP_076694040.1 | aldo/keto reductase | - |
| Ga0080574_RS00405 () | 78800..79465 | - | 666 | WP_076694042.1 | SDR family oxidoreductase | - |
| Ga0080574_RS00410 () | 79634..82012 | - | 2379 | WP_076694044.1 | transketolase | - |
| Ga0080574_RS00415 () | 82246..83265 | - | 1020 | WP_076694046.1 | 1-aminocyclopropane-1-carboxylate deaminase | - |
| Ga0080574_RS00420 () | 83404..83880 | + | 477 | WP_076694048.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| Ga0080574_RS00425 () | 83903..85138 | - | 1236 | WP_076694050.1 | FAD-binding oxidoreductase | - |
| Ga0080574_RS00430 () | 85163..85495 | - | 333 | WP_076694052.1 | RidA family protein | - |
| Ga0080574_RS00435 () | 85517..87016 | - | 1500 | WP_076694054.1 | amidase | - |
| Ga0080574_RS00440 () | 87013..88338 | - | 1326 | WP_076694056.1 | D-serine ammonia-lyase | - |
| Ga0080574_RS00445 () | 88335..89147 | - | 813 | WP_076694058.1 | sulfite exporter TauE/SafE family protein | - |
| Ga0080574_RS00450 () | 89151..90539 | - | 1389 | WP_076694060.1 | M20 family metallopeptidase | - |
| Ga0080574_RS00455 () | 90562..92133 | - | 1572 | WP_076694062.1 | Acylase ACY 1 proenzyme | VF |
| Ga0080574_RS00460 () | 92130..93794 | - | 1665 | WP_076694065.1 | Glutathione import ATP-binding protein GsiA | VF |
| Ga0080574_RS00465 () | 93794..94702 | - | 909 | WP_076694067.1 | ABC transporter permease | - |
| Ga0080574_RS00470 () | 94719..95636 | - | 918 | WP_076694069.1 | ABC transporter permease | - |
| Ga0080574_RS00475 () | 95699..97207 | - | 1509 | WP_076694158.1 | ABC transporter substrate-binding protein | - |
| Ga0080574_RS00480 () | 97348..97977 | + | 630 | Protein_94 | GntR family transcriptional regulator | - |
| Ga0080574_RS00485 () | 98113..99174 | - | 1062 | WP_156876209.1 | site-specific integrase | - |
| Ga0080574_RS00490 () | 99318..99860 | - | 543 | WP_076694075.1 | flavin reductase family protein | - |
| Ga0080574_RS00495 () | 99966..100487 | - | 522 | WP_156876211.1 | HTH-type transcriptional regulator LeuO | VF |
| Ga0080574_RS00500 () | 100589..100816 | + | 228 | WP_076694079.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| Ga0080574_RS00505 () | 100806..101207 | + | 402 | WP_076694081.1 | PIN domain-containing protein | Toxin Detail |
| Ga0080574_RS00510 () | 101217..103184 | - | 1968 | WP_083716691.1 | TRAP transporter fused permease subunit | - |
| Ga0080574_RS00515 () | 103190..104146 | - | 957 | WP_076694083.1 | TAXI family TRAP transporter solute-binding subunit | - |
| Ga0080574_RS00520 () | 104211..104945 | - | 735 | WP_076694162.1 | class II aldolase/adducin family protein | - |
| Ga0080574_RS00525 () | 105057..105983 | + | 927 | WP_076694085.1 | LysR family transcriptional regulator | - |
| Ga0080574_RS00530 () | 106003..106896 | - | 894 | WP_076694087.1 | LysR family transcriptional regulator | - |
| Ga0080574_RS00535 () | 107069..108568 | + | 1500 | WP_076694089.1 | aldehyde dehydrogenase family protein | - |
| Ga0080574_RS00540 () | 108558..109835 | + | 1278 | WP_076694091.1 | FAD-binding oxidoreductase | - |
| Ga0080574_RS00550 () | 110496..112700 | - | 2205 | WP_076694094.1 | NADP-dependent isocitrate dehydrogenase | - |
| Ga0080574_RS00555 () | 112907..113098 | + | 192 | WP_156876213.1 | hypothetical protein | - |
| Ga0080574_RS00560 () | 113172..113969 | - | 798 | WP_076694098.1 | ABC transporter permease | - |
| Ga0080574_RS00565 () | 113966..114685 | - | 720 | WP_076694100.1 | putative ABC transporter ATP-binding protein YadG | VF |
| Ga0080574_RS00570 () | 114736..115470 | - | 735 | WP_076694164.1 | ABC transporter permease | - |
| Ga0080574_RS00575 () | 115645..115848 | - | 204 | WP_076694102.1 | hypothetical protein | - |
| Ga0080574_RS00580 () | 115997..117595 | + | 1599 | WP_076694105.1 | putative sensor histidine kinase TcrY | VF |
| Ga0080574_RS00585 () | 117605..118285 | + | 681 | WP_076694107.1 | Response regulator MprA | VF |
| Ga0080574_RS00590 () | 118358..118837 | + | 480 | WP_076694109.1 | acyl-CoA thioesterase | - |
| Ga0080574_RS00595 () | 118987..119643 | + | 657 | WP_156876217.1 | acyltransferase family protein | - |
| Ga0080574_RS00600 () | 119669..120310 | - | 642 | WP_076694113.1 | hypothetical protein | - |
| Ga0080574_RS00605 () | 120316..120669 | - | 354 | WP_076694115.1 | flagellar motor switch protein | - |
| Ga0080574_RS00610 () | 120653..121594 | - | 942 | WP_076694117.1 | FliM/FliN family flagellar motor switch protein | - |
| Ga0080574_RS00615 () | 121591..122166 | - | 576 | WP_076694119.1 | flagellar basal body-associated FliL family protein | - |
| Ga0080574_RS00620 () | 122315..124021 | + | 1707 | WP_076694121.1 | Flagellar M-ring protein | VF |
| Ga0080574_RS00625 () | 124018..124692 | + | 675 | WP_076694123.1 | hypothetical protein | - |
| Ga0080574_RS00630 () | 124689..125039 | + | 351 | WP_076694125.1 | Flagellar motor switch protein FliN | VF |
| Ga0080574_RS00635 () | 125036..125884 | + | 849 | WP_076694127.1 | Flagellar biosynthetic protein FliP | VF |
| Ga0080574_RS00640 () | 125906..126967 | + | 1062 | WP_076694129.1 | flagellar motor switch protein FliG | - |
| Ga0080574_RS00645 () | 127241..128062 | - | 822 | WP_076694131.1 | DUF1217 domain-containing protein | - |
| Ga0080574_RS00650 () | 128059..128505 | - | 447 | WP_076694134.1 | flagellar biosynthesis repressor FlbT | - |
| Ga0080574_RS00655 () | 128474..128908 | - | 435 | WP_076694136.1 | hypothetical protein | VF |
| Ga0080574_RS00660 () | 129052..129888 | - | 837 | WP_076694138.1 | Flagellin | VF |
| Ga0080574_RS00665 () | 130003..130413 | - | 411 | WP_076694140.1 | hypothetical protein | - |
| Ga0080574_RS00670 () | 130410..130730 | - | 321 | WP_076694142.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|