MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 147296 bp
Accession: NZ_CP014978 Location: 1..147296 Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1896 isolate ST03-F34 Replicon: plasmid pSTY1-1896
Accession: NZ_CP014978 Location: 1..147296 Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1896 isolate ST03-F34 Replicon: plasmid pSTY1-1896
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AW99_RS23545 () | 323..862 | + | 540 | WP_001447712.1 | hypothetical protein | - |
| AW99_RS23550 () | 867..1154 | + | 288 | WP_000127321.1 | hypothetical protein | - |
| AW99_RS23555 () | 1139..2239 | + | 1101 | WP_000350011.1 | plasmid replication protein | - |
| AW99_RS23565 () | 3276..3710 | - | 435 | WP_000883925.1 | hypothetical protein | - |
| AW99_RS23570 () | 3728..4843 | - | 1116 | WP_000946102.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| AW99_RS23575 () | 5112..5720 | + | 609 | WP_000849071.1 | hypothetical protein | - |
| AW99_RS23580 () | 5725..6246 | + | 522 | WP_000393785.1 | hypothetical protein | - |
| AW99_RS23585 () | 6249..6770 | + | 522 | WP_000805800.1 | hypothetical protein | - |
| AW99_RS23590 () | 6867..7340 | + | 474 | WP_000057877.1 | hypothetical protein | - |
| AW99_RS23595 () | 7351..7635 | + | 285 | WP_162492836.1 | hypothetical protein | - |
| AW99_RS23600 () | 7635..8129 | + | 495 | WP_162492837.1 | hypothetical protein | - |
| AW99_RS23605 () | 8029..8360 | + | 332 | Protein_11 | hypothetical protein | - |
| AW99_RS23610 () | 8365..9219 | + | 855 | WP_000539392.1 | hypothetical protein | - |
| AW99_RS23615 () | 9219..10178 | + | 960 | WP_000829616.1 | S49 family peptidase | - |
| AW99_RS23620 () | 10194..11054 | + | 861 | WP_000139698.1 | DsbA family protein | - |
| AW99_RS23625 () | 11088..11516 | + | 429 | WP_000591074.1 | hypothetical protein | - |
| AW99_RS23630 () | 11573..11932 | + | 360 | WP_000422768.1 | hypothetical protein | - |
| AW99_RS23635 () | 11932..12378 | + | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| AW99_RS23640 () | 12375..12893 | + | 519 | WP_000210756.1 | nitrite reductase | - |
| AW99_RS23645 () | 12893..13123 | + | 231 | WP_000972663.1 | hypothetical protein | - |
| AW99_RS23650 () | 13110..13967 | + | 858 | WP_001167032.1 | hypothetical protein | - |
| AW99_RS23660 () | 14198..14725 | + | 528 | WP_001236377.1 | thermonuclease family protein | - |
| AW99_RS23665 () | 14783..15055 | + | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
| AW99_RS23670 () | 15143..15436 | + | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
| AW99_RS23675 () | 15463..15765 | - | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin Detail |
| AW99_RS23680 () | 15770..16120 | - | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| AW99_RS23685 () | 16283..16831 | + | 549 | WP_001061574.1 | transcriptional regulator | - |
| AW99_RS26395 () | 17172..17366 | + | 195 | WP_000343597.1 | hypothetical protein | - |
| AW99_RS26400 () | 17377..17748 | + | 372 | WP_000516916.1 | hypothetical protein | - |
| AW99_RS23705 () | 17741..18211 | + | 471 | WP_001281821.1 | hypothetical protein | - |
| AW99_RS23710 () | 18226..18561 | - | 336 | WP_000683476.1 | hypothetical protein | - |
| AW99_RS23715 () | 18658..19146 | + | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| AW99_RS23720 () | 19149..19646 | + | 498 | WP_000062185.1 | hypothetical protein | - |
| AW99_RS23725 () | 19861..20565 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| AW99_RS23730 () | 20630..20809 | - | 180 | Protein_34 | helix-turn-helix transcriptional regulator | - |
| AW99_RS23735 () | 21116..21820 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| AW99_RS26960 () | 21826..21966 | + | 141 | WP_001044210.1 | hypothetical protein | - |
| AW99_RS23745 () | 22452..23189 | + | 738 | WP_001366550.1 | recombinase family protein | - |
| AW99_RS23750 () | 23186..23410 | + | 225 | WP_000743213.1 | hypothetical protein | - |
| AW99_RS23755 () | 23621..25114 | + | 1494 | WP_001120888.1 | IS91-like element ISVsa3 family transposase | - |
| AW99_RS23760 () | 25145..26029 | + | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| AW99_RS23765 () | 26246..27460 | + | 1215 | WP_000214123.1 | chloramphenicol/florfenicol efflux MFS transporter FloR | - |
| AW99_RS23770 () | 27488..27793 | + | 306 | WP_001255015.1 | LysR family transcriptional regulator | - |
| AW99_RS26840 () | 27905..28093 | + | 189 | Protein_43 | IS91 family transposase | - |
| AW99_RS23775 () | 28060..29259 | - | 1200 | WP_000804063.1 | tetracycline efflux MFS transporter Tet(A) | - |
| AW99_RS23780 () | 29365..30015 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| AW99_RS23785 () | 30047..30289 | - | 243 | WP_000844627.1 | transposase | - |
| AW99_RS23790 () | 30595..31431 | - | 837 | WP_000480968.1 | aminoglycoside O-phosphotransferase APH(6)-Id | - |
| AW99_RS23795 () | 31431..32234 | - | 804 | WP_001082319.1 | aminoglycoside O-phosphotransferase APH(3'')-Ib | - |
| AW99_RS23800 () | 32295..33110 | - | 816 | WP_001043260.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | - |
| AW99_RS23805 () | 33417..33728 | + | 312 | WP_000338945.1 | hypothetical protein | - |
| AW99_RS23810 () | 33902..34687 | + | 786 | WP_001151304.1 | ParA family protein | - |
| AW99_RS23815 () | 34691..35872 | + | 1182 | WP_001207227.1 | ParB/RepB/Spo0J family partition protein | - |
| AW99_RS23820 () | 35921..36193 | + | 273 | WP_000703827.1 | helix-turn-helix domain-containing protein | - |
| AW99_RS23825 () | 36246..36881 | - | 636 | WP_000074431.1 | N-6 DNA methylase | - |
| AW99_RS26965 () | 36973..37116 | - | 144 | WP_000939033.1 | hypothetical protein | - |
| AW99_RS23830 () | 37443..37820 | + | 378 | WP_001125904.1 | hypothetical protein | - |
| AW99_RS27125 () | 37813..38094 | + | 282 | WP_000044823.1 | hypothetical protein | - |
| AW99_RS23840 () | 38069..38743 | + | 675 | WP_000344149.1 | hypothetical protein | - |
| AW99_RS23845 () | 38811..39242 | + | 432 | WP_001326170.1 | hypothetical protein | - |
| AW99_RS23850 () | 39248..39559 | + | 312 | WP_001447539.1 | hypothetical protein | - |
| AW99_RS23855 () | 39568..40068 | + | 501 | WP_000647188.1 | hypothetical protein | - |
| AW99_RS23860 () | 40072..41499 | + | 1428 | WP_000936897.1 | DNA cytosine methyltransferase | - |
| AW99_RS23865 () | 41499..42155 | + | 657 | WP_000268552.1 | hypothetical protein | - |
| AW99_RS23870 () | 42211..42828 | + | 618 | WP_000464630.1 | hypothetical protein | - |
| AW99_RS23880 () | 43040..43339 | + | 300 | WP_001326171.1 | hypothetical protein | - |
| AW99_RS23885 () | 43430..43918 | - | 489 | WP_000467110.1 | hypothetical protein | - |
| AW99_RS23890 () | 43933..46125 | - | 2193 | WP_000366823.1 | DNA topoisomerase 3 | - |
| AW99_RS23895 () | 46125..46358 | - | 234 | WP_001191890.1 | hypothetical protein | - |
| AW99_RS23900 () | 46340..46957 | - | 618 | WP_001249395.1 | hypothetical protein | - |
| AW99_RS23905 () | 47125..50097 | + | 2973 | WP_001326173.1 | TraI domain-containing protein | - |
| AW99_RS23910 () | 50094..51959 | + | 1866 | WP_000178857.1 | conjugative transfer system coupling protein TraD | - |
| AW99_RS23915 () | 51970..52554 | + | 585 | WP_000332868.1 | hypothetical protein | - |
| AW99_RS23920 () | 52511..53140 | + | 630 | WP_000743449.1 | DUF4400 domain-containing protein | - |
| AW99_RS23925 () | 53150..53596 | + | 447 | WP_000122507.1 | hypothetical protein | - |
| AW99_RS23930 () | 53606..53983 | + | 378 | WP_000869297.1 | hypothetical protein | - |
| AW99_RS23935 () | 53983..54645 | + | 663 | WP_001231464.1 | hypothetical protein | - |
| AW99_RS23940 () | 54969..55346 | + | 378 | WP_001326174.1 | hypothetical protein | - |
| AW99_RS23945 () | 55491..55772 | + | 282 | WP_000805625.1 | type IV conjugative transfer system protein TraL | - |
| AW99_RS23950 () | 55769..56395 | + | 627 | WP_001049717.1 | hypothetical protein | - |
| AW99_RS23955 () | 56379..57296 | + | 918 | WP_000794249.1 | type-F conjugative transfer system secretin TraK | - |
| AW99_RS23960 () | 57296..58609 | + | 1314 | WP_024131605.1 | conjugal transfer protein TraB | - |
| AW99_RS23965 () | 58606..59184 | + | 579 | WP_000793435.1 | type IV conjugative transfer system lipoprotein TraV | - |
| AW99_RS23970 () | 59188..59580 | + | 393 | WP_000479535.1 | hypothetical protein | - |
| AW99_RS23975 () | 59865..61127 | + | 1263 | WP_000608644.1 | IS1380-like element ISEc9 family transposase | - |
| AW99_RS23980 () | 61451..62596 | + | 1146 | WP_000976514.1 | class C beta-lactamase CMY-2 | - |
| AW99_RS23985 () | 62690..63223 | + | 534 | WP_001221666.1 | lipocalin family protein | - |
| AW99_RS23990 () | 63220..63537 | - | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| AW99_RS23995 () | 64265..69751 | + | 5487 | WP_000606835.1 | DUF4165 domain-containing protein | - |
| AW99_RS24000 () | 69900..70607 | + | 708 | WP_001259346.1 | DsbC family protein | - |
| AW99_RS24005 () | 70604..73051 | + | 2448 | WP_000637384.1 | type IV secretion system protein TraC | - |
| AW99_RS24010 () | 73066..73383 | + | 318 | WP_000351984.1 | hypothetical protein | - |
| AW99_RS24015 () | 73380..73910 | + | 531 | WP_001010740.1 | S26 family signal peptidase | - |
| AW99_RS24020 () | 73873..75138 | + | 1266 | WP_001447719.1 | conjugal transfer protein TraW | - |
| AW99_RS24025 () | 75135..75806 | + | 672 | WP_000575345.1 | EAL domain-containing protein | - |
| AW99_RS24030 () | 75803..76810 | + | 1008 | WP_000983282.1 | TraU family protein | - |
| AW99_RS24035 () | 76914..79721 | + | 2808 | WP_001447718.1 | conjugal transfer mating pair stabilization protein TraN | - |
| AW99_RS24040 () | 79760..80620 | - | 861 | WP_000709517.1 | hypothetical protein | - |
| AW99_RS24045 () | 80743..81384 | - | 642 | WP_000796664.1 | hypothetical protein | - |
| AW99_RS24050 () | 81679..81999 | + | 321 | WP_000547566.1 | hypothetical protein | - |
| AW99_RS24055 () | 82303..82488 | + | 186 | WP_001186917.1 | hypothetical protein | - |
| AW99_RS24060 () | 82708..83676 | + | 969 | WP_000085160.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| AW99_RS24065 () | 83687..84595 | + | 909 | WP_000739139.1 | hypothetical protein | - |
| AW99_RS24070 () | 84655..85185 | + | 531 | WP_000987165.1 | single-stranded DNA-binding protein | - |
| AW99_RS24075 () | 85280..86269 | + | 990 | WP_001282585.1 | phage recombination protein Bet | - |
| AW99_RS24080 () | 86332..87342 | + | 1011 | WP_000706865.1 | YqaJ viral recombinase family protein | - |
| AW99_RS24085 () | 87542..88819 | + | 1278 | WP_000170087.1 | DUF3150 domain-containing protein | - |
| AW99_RS24090 () | 88904..90700 | + | 1797 | WP_000039319.1 | VWA domain-containing protein | - |
| AW99_RS25960 () | 90762..91097 | + | 336 | WP_001447572.1 | hypothetical protein | - |
| AW99_RS24095 () | 91362..91901 | + | 540 | WP_000018872.1 | hypothetical protein | - |
| AW99_RS24100 () | 91992..92492 | + | 501 | WP_000793769.1 | hypothetical protein | - |
| AW99_RS24105 () | 92566..93450 | + | 885 | WP_000477209.1 | hypothetical protein | - |
| AW99_RS24110 () | 93516..93740 | + | 225 | WP_001102700.1 | 2Fe-2S ferredoxin-like protein | - |
| AW99_RS24115 () | 93802..94191 | + | 390 | WP_000026577.1 | hypothetical protein | - |
| AW99_RS26405 () | 94181..94633 | + | 453 | WP_001176699.1 | hypothetical protein | - |
| AW99_RS24130 () | 94971..95162 | + | 192 | WP_000651508.1 | hypothetical protein | - |
| AW99_RS24135 () | 95207..95584 | + | 378 | WP_001337696.1 | hypothetical protein | - |
| AW99_RS24140 () | 95776..96120 | + | 345 | WP_000209093.1 | hypothetical protein | - |
| AW99_RS24145 () | 96198..96500 | + | 303 | WP_000410925.1 | hypothetical protein | - |
| AW99_RS24150 () | 96578..98203 | + | 1626 | WP_000201432.1 | DNA cytosine methyltransferase | - |
| AW99_RS24155 () | 98264..98695 | + | 432 | WP_000687894.1 | hypothetical protein | - |
| AW99_RS24160 () | 98769..99323 | + | 555 | WP_001093867.1 | hypothetical protein | - |
| AW99_RS24165 () | 99556..99942 | + | 387 | WP_000042274.1 | hypothetical protein | - |
| AW99_RS24170 () | 100030..102483 | + | 2454 | WP_001187969.1 | phosphoadenosine phosphosulfate reductase | - |
| AW99_RS24175 () | 102685..102888 | + | 204 | WP_000050847.1 | hypothetical protein | - |
| AW99_RS24180 () | 102960..103565 | + | 606 | WP_000071870.1 | 5'-deoxynucleotidase | - |
| AW99_RS24185 () | 103558..103827 | + | 270 | WP_000184110.1 | hypothetical protein | - |
| AW99_RS24190 () | 103841..104059 | + | 219 | WP_000260293.1 | hypothetical protein | - |
| AW99_RS24195 () | 104133..104690 | + | 558 | WP_000064432.1 | hypothetical protein | - |
| AW99_RS24200 () | 104765..105616 | + | 852 | WP_000595210.1 | hypothetical protein | - |
| AW99_RS24205 () | 106075..106461 | + | 387 | WP_001077336.1 | hypothetical protein | - |
| AW99_RS24210 () | 106639..108366 | + | 1728 | WP_000122922.1 | toprim domain-containing protein | - |
| AW99_RS24215 () | 108353..108631 | + | 279 | WP_000268337.1 | hypothetical protein | - |
| AW99_RS24220 () | 108704..108925 | + | 222 | WP_000714163.1 | hypothetical protein | - |
| AW99_RS24225 () | 109107..110111 | - | 1005 | WP_000427619.1 | IS110-like element IS5075 family transposase | - |
| AW99_RS24230 () | 110190..112094 | - | 1905 | Protein_135 | Tn3 family transposase | - |
| AW99_RS24235 () | 112150..112854 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| AW99_RS24240 () | 112917..113621 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| AW99_RS24245 () | 113831..114820 | - | 990 | WP_001276635.1 | DUF3330 domain-containing protein | - |
| AW99_RS24250 () | 114817..115053 | - | 237 | WP_001087810.1 | broad-spectrum mercury transporter MerE | - |
| AW99_RS24255 () | 115050..115415 | - | 366 | WP_000995361.1 | mercury resistance co-regulator MerD | - |
| AW99_RS24260 () | 115527..116165 | - | 639 | WP_000761850.1 | organomercurial lyase MerB | - |
| AW99_RS24265 () | 116180..117865 | - | 1686 | WP_000149288.1 | mercury(II) reductase | - |
| AW99_RS24270 () | 117937..118212 | - | 276 | WP_000732290.1 | mercury resistance system periplasmic binding protein MerP | - |
| AW99_RS24275 () | 118228..118578 | - | 351 | WP_001294666.1 | mercuric transport protein MerT | - |
| AW99_RS24280 () | 118650..119084 | + | 435 | WP_000414383.1 | mercury resistance transcriptional regulator MerR | - |
| AW99_RS24285 () | 119184..120188 | + | 1005 | WP_000427623.1 | IS110-like element IS4321 family transposase | - |
| AW99_RS27020 () | 120465..120584 | + | 120 | Protein_147 | permease | - |
| AW99_RS27025 () | 120594..120710 | + | 117 | WP_000338626.1 | hypothetical protein | - |
| AW99_RS24290 () | 120831..121205 | + | 375 | WP_000868820.1 | hypothetical protein | - |
| AW99_RS24295 () | 121319..122044 | + | 726 | WP_000988731.1 | hypothetical protein | - |
| AW99_RS24300 () | 122177..126430 | + | 4254 | WP_001257735.1 | RHS domain-containing protein | - |
| AW99_RS24305 () | 126402..126842 | + | 441 | WP_001326394.1 | hypothetical protein | - |
| AW99_RS27035 () | 127013..127465 | + | 453 | Protein_153 | hypothetical protein | - |
| AW99_RS24315 () | 127481..128083 | - | 603 | WP_000278322.1 | hypothetical protein | - |
| AW99_RS24320 () | 128353..128634 | + | 282 | WP_000575657.1 | hypothetical protein | - |
| AW99_RS24330 () | 128933..129469 | + | 537 | WP_000949433.1 | hypothetical protein | - |
| AW99_RS24335 () | 129472..130482 | + | 1011 | WP_000543934.1 | tyrosine-type recombinase/integrase | - |
| AW99_RS24340 () | 130487..131356 | + | 870 | WP_000997323.1 | 3'-5' exonuclease | - |
| AW99_RS24345 () | 131353..131844 | + | 492 | WP_000139717.1 | hypothetical protein | - |
| AW99_RS24350 () | 132171..133046 | + | 876 | WP_001097010.1 | DNA replication terminus site-binding protein | - |
| AW99_RS24355 () | 133208..134248 | + | 1041 | WP_000101568.1 | DNA-binding protein | - |
| AW99_RS24365 () | 134535..136046 | + | 1512 | WP_000811656.1 | UvrD-helicase domain-containing protein | - |
| AW99_RS24370 () | 136157..137197 | + | 1041 | WP_001326396.1 | conjugal transfer protein TraF | - |
| AW99_RS24375 () | 137199..138632 | + | 1434 | WP_000256129.1 | conjugal transfer protein TraH | - |
| AW99_RS24380 () | 138645..142259 | + | 3615 | WP_000534551.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| AW99_RS24385 () | 142297..142659 | - | 363 | WP_000683483.1 | hypothetical protein | - |
| AW99_RS24390 () | 143375..143647 | + | 273 | WP_000356489.1 | helix-turn-helix domain-containing protein | - |
| AW99_RS24395 () | 143647..144180 | + | 534 | WP_000790610.1 | transglycosylase SLT domain-containing protein | - |
| AW99_RS24400 () | 144191..144799 | + | 609 | WP_000891157.1 | hypothetical protein | - |
| AW99_RS24405 () | 144796..145346 | + | 551 | Protein_170 | regulator | - |
| AW99_RS24410 () | 145406..145825 | - | 420 | WP_000651490.1 | H-NS histone family protein | - |
| AW99_RS24415 () | 145827..146120 | - | 294 | WP_000919078.1 | hypothetical protein | - |
| AW99_RS24420 () | 146137..147120 | - | 984 | WP_000077458.1 | ParM/StbA family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|