MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 93960 bp
Accession: NZ_CP014973 Location: 1..93960 Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1898 isolate ST073 Replicon: plasmid pSTY2-1898
Accession: NZ_CP014973 Location: 1..93960 Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1898 isolate ST073 Replicon: plasmid pSTY2-1898
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AX01_RS24800 () | 95..379 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| AX01_RS24805 () | 392..547 | + | 156 | WP_000983042.1 | hypothetical protein | - |
| AX01_RS24810 () | 713..1155 | + | 443 | Protein_2 | phospholipase | - |
| AX01_RS24820 () | 1334..1600 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| AX01_RS24830 () | 1850..1927 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| AX01_RS24835 () | 1908..2789 | + | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| AX01_RS24845 () | 3649..3870 | + | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| AX01_RS24850 () | 3967..4725 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| AX01_RS24855 () | 4992..5549 | - | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| AX01_RS24860 () | 5639..6538 | - | 900 | WP_010999938.1 | YjiK family protein | - |
| AX01_RS25930 () | 6535..6681 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| AX01_RS24865 () | 6671..7324 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| AX01_RS24870 () | 7569..7919 | - | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| AX01_RS24875 () | 7904..8116 | - | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| AX01_RS24880 () | 8548..9423 | - | 876 | WP_014343944.1 | hypothetical protein | - |
| AX01_RS24885 () | 9676..10233 | - | 558 | WP_010999940.1 | membrane protein | - |
| AX01_RS24890 () | 10248..10940 | - | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| AX01_RS24895 () | 10933..13341 | - | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| AX01_RS24900 () | 13569..14087 | - | 519 | WP_000748205.1 | major pilin PefA | - |
| AX01_RS24905 () | 14369..14671 | - | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| AX01_RS24915 () | 15390..15771 | + | 382 | Protein_20 | YgiW/YdeI family stress tolerance OB fold protein | - |
| AX01_RS25860 () | 16048..16384 | + | 337 | Protein_21 | site-specific integrase | - |
| AX01_RS24930 () | 16643..17632 | - | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| AX01_RS24935 () | 18126..18422 | - | 297 | WP_001687482.1 | hypothetical protein | - |
| AX01_RS24945 () | 18906..19427 | - | 522 | WP_010999942.1 | hypothetical protein | - |
| AX01_RS24950 () | 20103..20321 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| AX01_RS24955 () | 20323..20628 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| AX01_RS24960 () | 20630..20920 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| AX01_RS24965 () | 20917..21438 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| AX01_RS24970 () | 21473..22255 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| AX01_RS24975 () | 22264..22977 | + | 714 | Protein_30 | EAL domain-containing protein | - |
| AX01_RS24985 () | 22981..23490 | + | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| AX01_RS24990 () | 23484..23969 | + | 486 | WP_000905606.1 | membrane protein | - |
| AX01_RS25865 () | 24246..24533 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| AX01_RS24995 () | 24689..25249 | + | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| AX01_RS25000 () | 25316..25666 | - | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| AX01_RS25005 () | 25723..26147 | + | 425 | Protein_36 | IS200/IS605 family transposase | - |
| AX01_RS25010 () | 26274..26924 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| AX01_RS25015 () | 27185..27910 | - | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| AX01_RS25020 () | 28192..29967 | - | 1776 | WP_001676648.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| AX01_RS25935 () | 30019..30186 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| AX01_RS25025 () | 30149..30916 | - | 768 | WP_001526990.1 | virulence protein SpvA | - |
| AX01_RS25030 () | 31090..31254 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| AX01_RS25035 () | 31428..32321 | - | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| AX01_RS25040 () | 32930..33967 | + | 1038 | WP_001121399.1 | IS630 family transposase | - |
| AX01_RS25045 () | 34156..35181 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| AX01_RS25050 () | 35114..36778 | - | 1665 | WP_000098783.1 | IS481 family transposase | - |
| AX01_RS25055 () | 36762..37322 | - | 561 | WP_001240331.1 | recombinase family protein | - |
| AX01_RS25060 () | 37529..38269 | - | 741 | WP_001541566.1 | carbonic anhydrase | - |
| AX01_RS25065 () | 38924..39412 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| AX01_RS25070 () | 39671..40786 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| AX01_RS25075 () | 40872..41288 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| AX01_RS25080 () | 41472..41807 | + | 336 | WP_001527010.1 | hypothetical protein | - |
| AX01_RS25085 () | 41864..42430 | + | 567 | WP_001541562.1 | DUF2913 family protein | - |
| AX01_RS25090 () | 42462..43403 | - | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| AX01_RS25095 () | 43818..45023 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| AX01_RS25100 () | 45023..45997 | + | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| AX01_RS25105 () | 46079..47353 | - | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| AX01_RS25110 () | 47353..47775 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| AX01_RS25115 () | 48286..48756 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| AX01_RS25120 () | 48749..49105 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| AX01_RS25130 () | 49487..50167 | + | 681 | WP_000088645.1 | DNA methylase | - |
| AX01_RS25135 () | 50167..50388 | + | 222 | WP_001109588.1 | hypothetical protein | - |
| AX01_RS25140 () | 50444..50857 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| AX01_RS25145 () | 50929..51693 | + | 765 | WP_001246548.1 | membrane protein | - |
| AX01_RS25150 () | 51870..52176 | + | 307 | Protein_65 | DUF1472 domain-containing protein | - |
| AX01_RS25155 () | 52189..52623 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| AX01_RS25160 () | 52690..53124 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| AX01_RS25165 () | 53360..53683 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| AX01_RS25870 () | 53647..53802 | + | 156 | WP_001526868.1 | hypothetical protein | - |
| AX01_RS25185 () | 54396..54914 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| AX01_RS25190 () | 54969..55211 | + | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| AX01_RS25195 () | 55280..57277 | + | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| AX01_RS25200 () | 57317..57751 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| AX01_RS25205 () | 57748..58485 | + | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| AX01_RS25940 () | 58734..58892 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| AX01_RS25945 () | 58995..59813 | + | 819 | Protein_76 | DUF945 domain-containing protein | - |
| AX01_RS25225 () | 60124..60594 | - | 471 | WP_001526856.1 | transglycosylase SLT domain-containing protein | - |
| AX01_RS25235 () | 61009..61389 | + | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| AX01_RS25240 () | 61582..62268 | + | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| AX01_RS25245 () | 62362..62589 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| AX01_RS25250 () | 62631..62993 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| AX01_RS25255 () | 63008..63319 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| AX01_RS25260 () | 63341..63907 | + | 567 | WP_000399769.1 | type IV conjugative transfer system protein TraE | - |
| AX01_RS25265 () | 63894..64634 | + | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| AX01_RS25270 () | 64634..66055 | + | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| AX01_RS25275 () | 66045..66641 | + | 597 | WP_000527896.1 | conjugal transfer protein TraP | - |
| AX01_RS25280 () | 66619..66864 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| AX01_RS25285 () | 66861..67376 | + | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| AX01_RS25290 () | 67511..67732 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| AX01_RS25295 () | 67725..68192 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| AX01_RS25300 () | 68309..68572 | + | 264 | WP_001239256.1 | hypothetical protein | - |
| AX01_RS25305 () | 68588..71236 | + | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| AX01_RS25310 () | 71211..71597 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| AX01_RS25315 () | 71594..72226 | + | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| AX01_RS25320 () | 72223..73215 | + | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| AX01_RS25325 () | 73234..73542 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| AX01_RS25330 () | 73527..74165 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| AX01_RS25335 () | 74202..74621 | + | 420 | WP_001229397.1 | HNH endonuclease | - |
| AX01_RS25340 () | 74618..76444 | + | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| AX01_RS25345 () | 76455..76670 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| AX01_RS25350 () | 76682..77431 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| AX01_RS25355 () | 77645..77938 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| AX01_RS25360 () | 77925..78473 | + | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| AX01_RS25365 () | 78463..79845 | + | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| AX01_RS25370 () | 79842..82664 | + | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| AX01_RS25375 () | 82680..83174 | + | 495 | WP_010999946.1 | entry exclusion protein | - |
| AX01_RS25380 () | 83210..83941 | + | 732 | WP_000782438.1 | complement resistance protein TraT | - |
| AX01_RS25385 () | 84318..86588 | + | 2271 | WP_054175269.1 | type IV conjugative transfer system coupling protein TraD | - |
| AX01_RS25390 () | 86597..86995 | - | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | - |
| AX01_RS25395 () | 86995..87222 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | - |
| AX01_RS25400 () | 87304..92562 | + | 5259 | WP_000986921.1 | conjugative transfer relaxase/helicase TraI | - |
| AX01_RS25405 () | 92582..93322 | + | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| AX01_RS25410 () | 93377..93940 | + | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|