MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 95780 bp
Accession: NZ_CP014972 Location: 1..95780 Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1898 isolate ST073 Replicon: plasmid pSTY1-1898
Accession: NZ_CP014972 Location: 1..95780 Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1898 isolate ST073 Replicon: plasmid pSTY1-1898
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AX01_RS24200 () | 456..1487 | + | 1032 | WP_063320156.1 | replication initiation protein | - |
| AX01_RS24215 () | 2386..2670 | + | 285 | WP_001178089.1 | ribbon-helix-helix protein, CopG family | Antitoxin Detail |
| AX01_RS24220 () | 2670..2897 | + | 228 | WP_047656545.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| AX01_RS25910 () | 2884..3150 | - | 267 | WP_021576094.1 | hypothetical protein | - |
| AX01_RS24230 () | 3155..3655 | - | 501 | WP_024230392.1 | hypothetical protein | - |
| AX01_RS24235 () | 3711..4313 | - | 603 | WP_063320157.1 | proQ/FINO family protein | - |
| AX01_RS24245 () | 4667..6013 | + | 1347 | WP_063320158.1 | hypothetical protein | - |
| AX01_RS24250 () | 6292..8172 | + | 1881 | WP_063320159.1 | colicin | - |
| AX01_RS24255 () | 8190..8537 | - | 348 | WP_016232722.1 | hypothetical protein | - |
| AX01_RS24260 () | 8656..9003 | + | 348 | WP_000142449.1 | hypothetical protein | - |
| AX01_RS24265 () | 9021..9611 | - | 591 | WP_063320160.1 | hypothetical protein | - |
| AX01_RS24270 () | 9611..9868 | - | 258 | WP_063320161.1 | hypothetical protein | - |
| AX01_RS24275 () | 10156..11277 | + | 1122 | WP_063320162.1 | DUF3800 domain-containing protein | - |
| AX01_RS24280 () | 11320..11811 | - | 492 | WP_063320163.1 | hypothetical protein | - |
| AX01_RS24285 () | 12366..12779 | + | 414 | WP_063320164.1 | hypothetical protein | - |
| AX01_RS24290 () | 12781..13563 | + | 783 | WP_063320165.1 | site-specific integrase | - |
| AX01_RS24295 () | 13701..13976 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| AX01_RS24300 () | 13970..14614 | - | 645 | WP_000633913.1 | AAA family ATPase | - |
| AX01_RS24305 () | 14843..15814 | + | 972 | WP_063320166.1 | plasmid segregation protein parM | - |
| AX01_RS24310 () | 15819..16211 | + | 393 | WP_000340830.1 | plasmid partitioning/stability family protein | - |
| AX01_RS24315 () | 16216..17487 | - | 1272 | WP_063320167.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| AX01_RS24320 () | 17487..17924 | - | 438 | WP_063320168.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| AX01_RS24325 () | 17921..18169 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| AX01_RS24340 () | 19192..20917 | + | 1726 | Protein_23 | group II intron reverse transcriptase/maturase | - |
| AX01_RS24345 () | 20994..21896 | + | 903 | WP_000273918.1 | DUF1281 domain-containing protein | - |
| AX01_RS25835 () | 21893..22204 | + | 312 | WP_010891263.1 | hypothetical protein | - |
| AX01_RS24350 () | 22281..22964 | + | 684 | WP_000086178.1 | DNA methylase | - |
| AX01_RS24355 () | 22965..23186 | + | 222 | WP_001104887.1 | hypothetical protein | - |
| AX01_RS24360 () | 23198..23632 | + | 435 | WP_000274403.1 | DUF1380 family protein | - |
| AX01_RS24365 () | 23632..24441 | + | 810 | Protein_29 | hypothetical protein | - |
| AX01_RS24370 () | 24326..24898 | + | 573 | WP_015059345.1 | YubH family protein | - |
| AX01_RS24375 () | 24871..25296 | + | 426 | WP_001198886.1 | antirestriction protein | - |
| AX01_RS24380 () | 25343..25765 | + | 423 | WP_063320169.1 | DUF1380 family protein | - |
| AX01_RS24385 () | 25762..25953 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| AX01_RS25915 () | 26286..26354 | - | 69 | Protein_34 | pilus protein | - |
| AX01_RS24400 () | 26723..27250 | + | 528 | WP_001276110.1 | single-stranded DNA-binding protein | - |
| AX01_RS24405 () | 27308..27541 | + | 234 | WP_000006014.1 | DUF905 domain-containing protein | - |
| AX01_RS24410 () | 27600..29558 | + | 1959 | WP_063320170.1 | ParB/RepB/Spo0J family partition protein | - |
| AX01_RS24415 () | 29613..30047 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| AX01_RS24420 () | 30044..30763 | + | 720 | WP_001276258.1 | plasmid SOS inhibition protein A | - |
| AX01_RS24425 () | 30760..31356 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| AX01_RS24430 () | 31428..31898 | + | 471 | WP_085460106.1 | DUF1472 domain-containing protein | - |
| AX01_RS24435 () | 31819..32319 | + | 501 | WP_000117609.1 | antirestriction protein ArdA | - |
| AX01_RS24450 () | 33048..33482 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| AX01_RS24455 () | 33576..33842 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| AX01_RS24460 () | 33907..34848 | + | 942 | WP_063320171.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| AX01_RS25920 () | 34910..35080 | + | 171 | WP_069200648.1 | hypothetical protein | - |
| AX01_RS24465 () | 35111..35362 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| AX01_RS24475 () | 35942..36790 | + | 849 | WP_063320172.1 | DUF4942 domain-containing protein | - |
| AX01_RS24480 () | 36875..37210 | - | 336 | WP_063320173.1 | hypothetical protein | - |
| AX01_RS24485 () | 37444..37776 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| AX01_RS24490 () | 37787..40486 | + | 2700 | WP_071921283.1 | IncI1-type relaxase NikB | - |
| AX01_RS24495 () | 40512..41084 | + | 573 | WP_061330273.1 | hypothetical protein | - |
| AX01_RS24500 () | 41134..43323 | - | 2190 | WP_061330275.1 | peptidase domain-containing ABC transporter | - |
| AX01_RS24505 () | 43323..44576 | - | 1254 | WP_063320175.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| AX01_RS24510 () | 44679..45314 | - | 636 | WP_063320176.1 | CPBP family intramembrane metalloprotease | - |
| AX01_RS24520 () | 46099..48390 | - | 2292 | WP_072279317.1 | conjugal transfer protein TrbC | - |
| AX01_RS24525 () | 48383..49453 | - | 1071 | WP_023225282.1 | IncI1-type conjugal transfer protein TrbB | - |
| AX01_RS24530 () | 49472..50680 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| AX01_RS24535 () | 50972..51124 | + | 153 | WP_001303307.1 | Hok/Gef family protein | - |
| AX01_RS24540 () | 51196..51447 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| AX01_RS25925 () | 52371..52547 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| AX01_RS24550 () | 52939..53148 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| AX01_RS24555 () | 53220..53882 | - | 663 | WP_000644794.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| AX01_RS24560 () | 53953..56121 | - | 2169 | WP_000698368.1 | DotA/TraY family protein | - |
| AX01_RS24565 () | 56218..56802 | - | 585 | WP_001037985.1 | IncI1-type conjugal transfer protein TraX | - |
| AX01_RS24570 () | 56831..58033 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| AX01_RS24575 () | 58000..58614 | - | 615 | WP_000337400.1 | IncI1-type conjugal transfer protein TraV | - |
| AX01_RS24580 () | 58614..61658 | - | 3045 | WP_063320177.1 | IncI1-type conjugal transfer protein TraU | - |
| AX01_RS24585 () | 61748..62548 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| AX01_RS24590 () | 62532..62720 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| AX01_RS24595 () | 62784..63188 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| AX01_RS24600 () | 63239..63766 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| AX01_RS24605 () | 63766..64470 | - | 705 | WP_042012199.1 | IncI1-type conjugal transfer protein TraP | - |
| AX01_RS24610 () | 64470..65759 | - | 1290 | WP_001271991.1 | conjugal transfer protein TraO | - |
| AX01_RS24615 () | 65762..66745 | - | 984 | WP_001191879.1 | IncI1-type conjugal transfer protein TraN | - |
| AX01_RS24620 () | 66756..67448 | - | 693 | WP_001685183.1 | DotI/IcmL family type IV secretion protein | - |
| AX01_RS24625 () | 67445..67792 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| AX01_RS24630 () | 67810..71577 | - | 3768 | WP_063320178.1 | hypothetical protein | - |
| AX01_RS24635 () | 71667..72218 | - | 552 | WP_000014584.1 | phospholipase D family protein | - |
| AX01_RS24640 () | 72233..72523 | - | 291 | WP_001314267.1 | hypothetical protein | - |
| AX01_RS24645 () | 72520..73668 | - | 1149 | WP_063320179.1 | plasmid transfer ATPase TraJ | - |
| AX01_RS24650 () | 73665..74483 | - | 819 | WP_000646097.1 | IncI1-type conjugal transfer lipoprotein TraI | - |
| AX01_RS24655 () | 74480..74938 | - | 459 | WP_001079808.1 | IncI1-type conjugal transfer lipoprotein TraH | - |
| AX01_RS24660 () | 75333..75917 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| AX01_RS24665 () | 75977..77179 | - | 1203 | WP_063320180.1 | conjugal transfer protein TraF | - |
| AX01_RS24670 () | 77265..78089 | - | 825 | WP_022630873.1 | hypothetical protein | - |
| AX01_RS24675 () | 78240..79394 | - | 1155 | WP_001139955.1 | integrase | - |
| AX01_RS25845 () | 79393..79479 | + | 87 | Protein_88 | shufflon protein D' | - |
| AX01_RS25850 () | 79528..79746 | + | 219 | WP_071527775.1 | shufflon protein D' | - |
| AX01_RS25855 () | 80382..80630 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| AX01_RS24700 () | 80627..81919 | - | 1293 | WP_001417545.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| AX01_RS24705 () | 81919..82575 | - | 657 | WP_069200671.1 | prepilin peptidase | - |
| AX01_RS24710 () | 82560..83120 | - | 561 | WP_063320181.1 | lytic transglycosylase domain-containing protein | - |
| AX01_RS24715 () | 83130..83744 | - | 615 | WP_063320182.1 | pilus assembly protein PilX | - |
| AX01_RS24720 () | 83762..84859 | - | 1098 | WP_063320183.1 | type II secretion system F family protein | - |
| AX01_RS24725 () | 84872..86425 | - | 1554 | WP_023166903.1 | Flp pilus assembly complex ATPase component TadA | - |
| AX01_RS24730 () | 86436..86888 | - | 453 | WP_001247870.1 | type IV pilus biogenesis protein PilP | - |
| AX01_RS24735 () | 86875..88170 | - | 1296 | WP_063320184.1 | type 4b pilus protein PilO2 | - |
| AX01_RS24740 () | 88163..89845 | - | 1683 | WP_000748143.1 | PilN family type IVB pilus formation outer membrane protein | - |
| AX01_RS24745 () | 89859..90296 | - | 438 | WP_000539807.1 | type IV pilus biogenesis protein PilM | - |
| AX01_RS24750 () | 90296..91363 | - | 1068 | WP_000742600.1 | type IV pilus biogenesis lipoprotein PilL | - |
| AX01_RS24760 () | 91984..92271 | - | 288 | WP_024144569.1 | hypothetical protein | - |
| AX01_RS24765 () | 92456..92710 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| AX01_RS24770 () | 92882..93565 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| AX01_RS24780 () | 93819..94352 | - | 534 | WP_001303319.1 | transcription termination factor NusG | - |
| AX01_RS24790 () | 94794..95081 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| AX01_RS24795 () | 94999..95262 | - | 264 | WP_071921286.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|