MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 94014 bp
Accession: NZ_CP014970 Location: 1..94014 Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1808 isolate ST1126-1 Replicon: plasmid pSTY1-1808
Accession: NZ_CP014970 Location: 1..94014 Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1808 isolate ST1126-1 Replicon: plasmid pSTY1-1808
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AW93_RS24015 () | 95..379 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| AW93_RS24020 () | 392..547 | + | 156 | WP_000983042.1 | hypothetical protein | - |
| AW93_RS24025 () | 713..1155 | + | 443 | Protein_2 | phospholipase | - |
| AW93_RS24030 () | 1334..1600 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| AW93_RS24040 () | 1850..1927 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| AW93_RS24045 () | 1908..2789 | + | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| AW93_RS26055 () | 3649..3870 | + | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| AW93_RS24050 () | 3967..4725 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| AW93_RS24055 () | 4992..5549 | - | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| AW93_RS24060 () | 5639..6538 | - | 900 | WP_010999938.1 | YjiK family protein | - |
| AW93_RS27290 () | 6535..6681 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| AW93_RS24065 () | 6671..7324 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| AW93_RS24070 () | 7569..7919 | - | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| AW93_RS24075 () | 7904..8116 | - | 213 | WP_071940722.1 | transcriptional regulator PefI | - |
| AW93_RS24080 () | 8552..9427 | - | 876 | WP_014343944.1 | hypothetical protein | - |
| AW93_RS24085 () | 9680..10237 | - | 558 | WP_010999940.1 | membrane protein | - |
| AW93_RS24090 () | 10252..10944 | - | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| AW93_RS24095 () | 10937..13345 | - | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| AW93_RS24100 () | 13573..14091 | - | 519 | WP_050949696.1 | major pilin PefA | - |
| AW93_RS24105 () | 14366..14668 | - | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| AW93_RS24110 () | 15387..15768 | + | 382 | Protein_20 | YgiW/YdeI family stress tolerance OB fold protein | - |
| AW93_RS26985 () | 16045..16381 | + | 337 | Protein_21 | site-specific integrase | - |
| AW93_RS24120 () | 16640..17629 | - | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| AW93_RS26560 () | 18123..18419 | - | 297 | WP_001687482.1 | hypothetical protein | - |
| AW93_RS24130 () | 18903..19424 | - | 522 | WP_010999942.1 | hypothetical protein | - |
| AW93_RS24135 () | 20100..20318 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| AW93_RS24140 () | 20320..20625 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| AW93_RS24145 () | 20627..20917 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| AW93_RS24150 () | 20914..21435 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| AW93_RS24155 () | 21470..22252 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| AW93_RS24160 () | 22261..22974 | + | 714 | Protein_30 | EAL domain-containing protein | - |
| AW93_RS24165 () | 22978..23487 | + | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| AW93_RS24170 () | 23481..23966 | + | 486 | WP_000905606.1 | membrane protein | - |
| AW93_RS27160 () | 24243..24530 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| AW93_RS24180 () | 24686..25246 | + | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| AW93_RS24185 () | 25313..25663 | - | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| AW93_RS26080 () | 25720..26144 | + | 425 | Protein_36 | IS200/IS605 family transposase | - |
| AW93_RS24195 () | 26271..26921 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| AW93_RS24200 () | 27182..27907 | - | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| AW93_RS24205 () | 28188..29963 | - | 1776 | WP_001676648.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| AW93_RS27295 () | 30015..30182 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| AW93_RS24210 () | 30145..30912 | - | 768 | WP_001526990.1 | virulence protein SpvA | - |
| AW93_RS24215 () | 31086..31250 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| AW93_RS24220 () | 31424..32317 | - | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| AW93_RS24225 () | 32926..33963 | + | 1038 | WP_001121399.1 | IS630 family transposase | - |
| AW93_RS24230 () | 34152..35177 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| AW93_RS24235 () | 35110..36774 | - | 1665 | WP_000098783.1 | IS481 family transposase | - |
| AW93_RS24240 () | 36758..37318 | - | 561 | WP_001240331.1 | recombinase family protein | - |
| AW93_RS24245 () | 37525..38265 | - | 741 | WP_001541566.1 | carbonic anhydrase | - |
| AW93_RS24250 () | 38920..39408 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| AW93_RS24255 () | 39667..40782 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| AW93_RS24260 () | 40868..41284 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| AW93_RS24265 () | 41468..41803 | + | 336 | WP_001527010.1 | hypothetical protein | - |
| AW93_RS24270 () | 41860..42426 | + | 567 | WP_001541562.1 | DUF2913 family protein | - |
| AW93_RS24275 () | 42458..43399 | - | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| AW93_RS24280 () | 43814..45019 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| AW93_RS24285 () | 45019..45993 | + | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| AW93_RS24290 () | 46075..47349 | - | 1275 | WP_022743179.1 | Y-family DNA polymerase | - |
| AW93_RS24295 () | 47349..47771 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| AW93_RS26570 () | 48282..48752 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| AW93_RS24305 () | 48745..49101 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| AW93_RS24315 () | 49483..50163 | + | 681 | WP_000088645.1 | DNA methylase | - |
| AW93_RS24320 () | 50163..50384 | + | 222 | WP_001109588.1 | hypothetical protein | - |
| AW93_RS24325 () | 50440..50853 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| AW93_RS24330 () | 50925..51689 | + | 765 | WP_001246548.1 | membrane protein | - |
| AW93_RS26090 () | 51866..52172 | + | 307 | Protein_65 | DUF1472 domain-containing protein | - |
| AW93_RS24335 () | 52185..52619 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| AW93_RS24340 () | 52686..53120 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| AW93_RS24345 () | 53356..53679 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| AW93_RS27165 () | 53643..53864 | + | 222 | WP_141025340.1 | hypothetical protein | - |
| AW93_RS24355 () | 54458..54976 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| AW93_RS24360 () | 55031..55273 | + | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| AW93_RS24365 () | 55342..57339 | + | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| AW93_RS24370 () | 57379..57813 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| AW93_RS24375 () | 57810..58547 | + | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| AW93_RS27210 () | 58796..58954 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| AW93_RS27300 () | 59057..59875 | + | 819 | Protein_76 | DUF945 domain-containing protein | - |
| AW93_RS24390 () | 60186..60656 | - | 471 | WP_001526856.1 | transglycosylase SLT domain-containing protein | - |
| AW93_RS24395 () | 61071..61451 | + | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| AW93_RS24400 () | 61644..62330 | + | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| AW93_RS26115 () | 62425..62652 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| AW93_RS24405 () | 62694..63056 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| AW93_RS24410 () | 63071..63382 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| AW93_RS24415 () | 63404..63970 | + | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| AW93_RS24420 () | 63957..64697 | + | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| AW93_RS24425 () | 64697..66118 | + | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| AW93_RS24430 () | 66108..66704 | + | 597 | WP_000527896.1 | conjugal transfer protein TraP | - |
| AW93_RS24435 () | 66682..66927 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| AW93_RS24440 () | 66924..67439 | + | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| AW93_RS24445 () | 67574..67795 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| AW93_RS24450 () | 67788..68255 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| AW93_RS24455 () | 68372..68635 | + | 264 | WP_001239256.1 | hypothetical protein | - |
| AW93_RS24460 () | 68651..71299 | + | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| AW93_RS24465 () | 71274..71660 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| AW93_RS24470 () | 71657..72289 | + | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| AW93_RS24475 () | 72286..73278 | + | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| AW93_RS24480 () | 73297..73605 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| AW93_RS24485 () | 73590..74228 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| AW93_RS24490 () | 74265..74684 | + | 420 | WP_001229397.1 | HNH endonuclease | - |
| AW93_RS24495 () | 74681..76507 | + | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| AW93_RS24500 () | 76518..76733 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| AW93_RS24505 () | 76745..77494 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| AW93_RS24510 () | 77708..78001 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| AW93_RS24515 () | 77988..78536 | + | 549 | WP_022743183.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| AW93_RS24520 () | 78526..79908 | + | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| AW93_RS24525 () | 79905..82727 | + | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| AW93_RS24530 () | 82743..83237 | + | 495 | WP_010999946.1 | entry exclusion protein | - |
| AW93_RS24535 () | 83273..84004 | + | 732 | WP_022743186.1 | complement resistance protein TraT | - |
| AW93_RS24540 () | 84381..86642 | + | 2262 | WP_022743189.1 | type IV conjugative transfer system coupling protein TraD | - |
| AW93_RS24545 () | 86651..87049 | - | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | - |
| AW93_RS24550 () | 87049..87276 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | - |
| AW93_RS24555 () | 87358..92616 | + | 5259 | WP_022743192.1 | conjugative transfer relaxase/helicase TraI | - |
| AW93_RS24560 () | 92636..93376 | + | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| AW93_RS24565 () | 93431..93994 | + | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|