MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 93837 bp
Accession: NZ_CP014357 Location: 1..93837 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SO2 isolate SOHS 02-20 Replicon: plasmid pSO2_STV
Accession: NZ_CP014357 Location: 1..93837 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SO2 isolate SOHS 02-20 Replicon: plasmid pSO2_STV
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SE17cs_RS23895 () | 94..378 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| SE17cs_RS23900 () | 391..546 | + | 156 | WP_000983042.1 | hypothetical protein | - |
| SE17cs_RS23905 () | 712..1153 | + | 442 | Protein_2 | phospholipase | - |
| SE17cs_RS23910 () | 1332..1598 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| SE17cs_RS23920 () | 1848..1925 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| SE17cs_RS23925 () | 1906..2787 | + | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| SE17cs_RS25870 () | 3647..3868 | + | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| SE17cs_RS23930 () | 3965..4723 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| SE17cs_RS23935 () | 4990..5547 | - | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| SE17cs_RS23940 () | 5637..6536 | - | 900 | WP_010999938.1 | YjiK family protein | - |
| SE17cs_RS26830 () | 6533..6679 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| SE17cs_RS23945 () | 6669..7322 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| SE17cs_RS23950 () | 7567..7917 | - | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| SE17cs_RS23955 () | 7902..8114 | - | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| SE17cs_RS23960 () | 8546..9421 | - | 876 | WP_077948574.1 | hypothetical protein | - |
| SE17cs_RS23965 () | 9674..10231 | - | 558 | WP_010999940.1 | membrane protein | - |
| SE17cs_RS23970 () | 10246..10938 | - | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| SE17cs_RS23975 () | 10931..13339 | - | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| SE17cs_RS23980 () | 13567..14085 | - | 519 | WP_000748205.1 | major pilin PefA | - |
| SE17cs_RS23985 () | 14360..14662 | - | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| SE17cs_RS23990 () | 15381..15762 | + | 382 | Protein_20 | YgiW/YdeI family stress tolerance OB fold protein | - |
| SE17cs_RS26660 () | 15931..16375 | + | 445 | Protein_21 | site-specific integrase | - |
| SE17cs_RS24000 () | 16634..17623 | - | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| SE17cs_RS26375 () | 18117..18413 | - | 297 | WP_001687482.1 | hypothetical protein | - |
| SE17cs_RS24010 () | 18897..19418 | - | 522 | WP_010999942.1 | hypothetical protein | - |
| SE17cs_RS24015 () | 20094..20312 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| SE17cs_RS24020 () | 20314..20619 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| SE17cs_RS24025 () | 20621..20911 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| SE17cs_RS24030 () | 20908..21429 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| SE17cs_RS24035 () | 21464..22246 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| SE17cs_RS24040 () | 22255..22968 | + | 714 | Protein_30 | EAL domain-containing protein | - |
| SE17cs_RS24045 () | 22972..23481 | + | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| SE17cs_RS24050 () | 23475..23960 | + | 486 | WP_000905606.1 | membrane protein | - |
| SE17cs_RS26665 () | 24237..24524 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| SE17cs_RS24060 () | 24680..25240 | + | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| SE17cs_RS24065 () | 25307..25657 | - | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| SE17cs_RS25895 () | 25714..26138 | + | 425 | Protein_36 | IS200/IS605 family transposase | - |
| SE17cs_RS24075 () | 26265..26915 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| SE17cs_RS24080 () | 27176..27901 | - | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| SE17cs_RS24085 () | 28182..29957 | - | 1776 | WP_001676648.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| SE17cs_RS26835 () | 30009..30176 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| SE17cs_RS24090 () | 30139..30906 | - | 768 | WP_001526990.1 | virulence protein SpvA | - |
| SE17cs_RS24095 () | 31080..31244 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| SE17cs_RS24100 () | 31418..32311 | - | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| SE17cs_RS24105 () | 32920..33957 | + | 1038 | WP_001121399.1 | IS630 family transposase | - |
| SE17cs_RS24110 () | 34146..35171 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| SE17cs_RS24115 () | 35104..36768 | - | 1665 | WP_000098783.1 | IS481 family transposase | - |
| SE17cs_RS24120 () | 36752..37312 | - | 561 | WP_001240331.1 | recombinase family protein | - |
| SE17cs_RS24125 () | 37519..38259 | - | 741 | WP_001541566.1 | carbonic anhydrase | - |
| SE17cs_RS24130 () | 38914..39402 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| SE17cs_RS24135 () | 39661..40776 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| SE17cs_RS24140 () | 40862..41278 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| SE17cs_RS24145 () | 41462..41797 | + | 336 | WP_001527010.1 | hypothetical protein | - |
| SE17cs_RS24150 () | 41854..42420 | + | 567 | WP_001541562.1 | DUF2913 family protein | - |
| SE17cs_RS24155 () | 42452..43393 | - | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| SE17cs_RS24160 () | 43808..45013 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| SE17cs_RS24165 () | 45013..45987 | + | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| SE17cs_RS24170 () | 46069..47343 | - | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| SE17cs_RS24175 () | 47343..47765 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| SE17cs_RS26385 () | 48276..48746 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| SE17cs_RS24185 () | 48739..49095 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| SE17cs_RS24195 () | 49477..50157 | + | 681 | WP_000088645.1 | DNA methylase | - |
| SE17cs_RS24200 () | 50157..50378 | + | 222 | WP_001109588.1 | hypothetical protein | - |
| SE17cs_RS24205 () | 50434..50847 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| SE17cs_RS24210 () | 50919..51683 | + | 765 | WP_001246548.1 | membrane protein | - |
| SE17cs_RS24215 () | 52179..52613 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| SE17cs_RS24220 () | 52680..53114 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| SE17cs_RS24225 () | 53350..53673 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| SE17cs_RS24235 () | 54380..54898 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| SE17cs_RS24240 () | 54953..55195 | + | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| SE17cs_RS24245 () | 55264..57261 | + | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| SE17cs_RS24250 () | 57301..57735 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| SE17cs_RS24255 () | 57732..58469 | + | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| SE17cs_RS26760 () | 58718..58876 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| SE17cs_RS26840 () | 58979..59797 | + | 819 | Protein_74 | DUF945 domain-containing protein | - |
| SE17cs_RS24270 () | 60108..60578 | - | 471 | WP_001526856.1 | transglycosylase SLT domain-containing protein | - |
| SE17cs_RS24275 () | 60993..61373 | + | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| SE17cs_RS24280 () | 61566..62252 | + | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| SE17cs_RS25930 () | 62346..62573 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| SE17cs_RS24285 () | 62615..62977 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| SE17cs_RS24290 () | 62992..63303 | + | 312 | WP_012825259.1 | type IV conjugative transfer system protein TraL | - |
| SE17cs_RS24295 () | 63325..63891 | + | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| SE17cs_RS24300 () | 63878..64618 | + | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| SE17cs_RS24305 () | 64618..66039 | + | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| SE17cs_RS24310 () | 66029..66625 | + | 597 | WP_000527896.1 | conjugal transfer protein TraP | - |
| SE17cs_RS24315 () | 66603..66848 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| SE17cs_RS24320 () | 66845..67360 | + | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| SE17cs_RS24325 () | 67495..67716 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| SE17cs_RS24330 () | 67709..68176 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| SE17cs_RS24335 () | 68293..68556 | + | 264 | WP_001239255.1 | hypothetical protein | - |
| SE17cs_RS24340 () | 68572..71220 | + | 2649 | WP_012825260.1 | type IV secretion system protein TraC | - |
| SE17cs_RS24345 () | 71195..71581 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| SE17cs_RS24350 () | 71578..72210 | + | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| SE17cs_RS24355 () | 72207..73199 | + | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| SE17cs_RS24360 () | 73218..73526 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| SE17cs_RS24365 () | 73511..74149 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| SE17cs_RS24370 () | 74186..74605 | + | 420 | WP_001229397.1 | HNH endonuclease | - |
| SE17cs_RS24375 () | 74602..76428 | + | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| SE17cs_RS24380 () | 76439..76654 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| SE17cs_RS24385 () | 76666..77415 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| SE17cs_RS24390 () | 77629..77922 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| SE17cs_RS24395 () | 77909..78457 | + | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| SE17cs_RS24400 () | 78447..79829 | + | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| SE17cs_RS24405 () | 79826..82648 | + | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| SE17cs_RS24410 () | 82664..83158 | + | 495 | WP_010999946.1 | entry exclusion protein | - |
| SE17cs_RS24415 () | 83194..83925 | + | 732 | WP_000782438.1 | complement resistance protein TraT | - |
| SE17cs_RS24420 () | 84302..86464 | + | 2163 | WP_000009318.1 | type IV conjugative transfer system coupling protein TraD | - |
| SE17cs_RS24425 () | 86473..86871 | - | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | - |
| SE17cs_RS24430 () | 86871..87098 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | - |
| SE17cs_RS24435 () | 87180..92438 | + | 5259 | WP_000986921.1 | conjugative transfer relaxase/helicase TraI | - |
| SE17cs_RS24440 () | 92458..93198 | + | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| SE17cs_RS24445 () | 93253..93816 | + | 564 | WP_061360767.1 | fertility inhibition protein FinO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|