MGE detailed information
MGE type: Conjugative plasmid MGE length: 82828 bp
Accession: NZ_CP014096 Location: 1..82828 Organism: Shigella sonnei strain FDAARGOS_90 Replicon: plasmid unnamed1
Accession: NZ_CP014096 Location: 1..82828 Organism: Shigella sonnei strain FDAARGOS_90 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL477_RS00010 (195) | 195..485 | + | 291 | WP_001314267.1 | hypothetical protein | - |
| AL477_RS00015 (500) | 500..1051 | + | 552 | WP_000014586.1 | Phospholipase D | VF |
| AL477_RS00020 (1141) | 1141..4905 | + | 3765 | WP_061066705.1 | DUF5710 domain-containing protein | - |
| AL477_RS00025 (4923) | 4923..5270 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| AL477_RS00030 (5267) | 5267..5959 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| AL477_RS00035 (5970) | 5970..6953 | + | 984 | WP_001191879.1 | hypothetical protein | VF |
| AL477_RS00040 (6956) | 6956..8245 | + | 1290 | WP_001271994.1 | conjugal transfer protein TraO | - |
| AL477_RS00045 (8245) | 8245..8949 | + | 705 | WP_061066706.1 | IncI1-type conjugal transfer protein TraP | - |
| AL477_RS00050 (8949) | 8949..9476 | + | 528 | WP_061066707.1 | conjugal transfer protein TraQ | - |
| AL477_RS00055 (9527) | 9527..9931 | + | 405 | WP_061066708.1 | IncI1-type conjugal transfer protein TraR | - |
| AL477_RS00060 (9995) | 9995..10183 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| AL477_RS00065 (10167) | 10167..10967 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| AL477_RS00070 (11057) | 11057..14101 | + | 3045 | WP_061066709.1 | IncI1-type conjugal transfer protein TraU | - |
| AL477_RS00075 (14101) | 14101..14715 | + | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| AL477_RS00080 (14682) | 14682..15884 | + | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| AL477_RS00085 (15913) | 15913..16497 | + | 585 | WP_001476649.1 | IncI1-type conjugal transfer protein TraX | - |
| AL477_RS00090 (16594) | 16594..18762 | + | 2169 | WP_000698357.1 | DotA/TraY family protein | - |
| AL477_RS00095 (18836) | 18836..19486 | + | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| AL477_RS00100 (19558) | 19558..19767 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| AL477_RS25780 (20159) | 20159..20335 | + | 177 | WP_001054898.1 | hypothetical protein | - |
| AL477_RS26665 (20400) | 20400..20495 | - | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| AL477_RS00105 (20994) | 20994..21245 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| AL477_RS00110 (21317) | 21317..21469 | - | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| - (21524) | 21524..21581 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (21524) | 21524..21581 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (21524) | 21524..21581 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (21524) | 21524..21581 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| AL477_RS00115 (21761) | 21761..22969 | + | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| AL477_RS00120 (22988) | 22988..24058 | + | 1071 | WP_061066710.1 | IncI1-type conjugal transfer protein TrbB | - |
| AL477_RS00125 (24051) | 24051..26342 | + | 2292 | WP_077108717.1 | F-type conjugative transfer protein TrbC | - |
| AL477_RS00130 (26379) | 26379..29078 | - | 2700 | WP_001360283.1 | Protein TraI | Relaxase |
| AL477_RS00135 (29089) | 29089..29421 | - | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| AL477_RS00140 (29655) | 29655..29990 | + | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| AL477_RS00145 (30076) | 30076..30924 | - | 849 | WP_001744093.1 | DUF4942 domain-containing protein | - |
| AL477_RS00155 (31504) | 31504..31755 | + | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| AL477_RS00160 (31786) | 31786..31992 | - | 207 | WP_000150314.1 | hypothetical protein | VF |
| AL477_RS00165 (32054) | 32054..32956 | - | 903 | WP_000038347.1 | Recombination-promoting nuclease RpnA | VF |
| AL477_RS00170 (32953) | 32953..33342 | - | 390 | WP_000833767.1 | hypothetical protein | - |
| AL477_RS00175 (33519) | 33519..33785 | - | 267 | WP_001247862.1 | hypothetical protein | - |
| AL477_RS00180 (33879) | 33879..34313 | - | 435 | WP_000218862.1 | hypothetical protein | - |
| AL477_RS00195 (35042) | 35042..35542 | - | 501 | WP_000117624.1 | antirestriction protein ArdA | - |
| AL477_RS00205 (36004) | 36004..36600 | - | 597 | WP_000977995.1 | hypothetical protein | - |
| AL477_RS00210 (36597) | 36597..37316 | - | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| AL477_RS00215 (37313) | 37313..37747 | - | 435 | WP_023166801.1 | conjugation system SOS inhibitor PsiB | - |
| AL477_RS00220 (37802) | 37802..39760 | - | 1959 | WP_061066711.1 | ParB/RepB/Spo0J family partition protein | - |
| AL477_RS00225 (39819) | 39819..40052 | - | 234 | WP_061066712.1 | DUF905 domain-containing protein | - |
| AL477_RS00230 (40110) | 40110..40637 | - | 528 | WP_061066713.1 | single-stranded DNA-binding protein | - |
| AL477_RS00240 (40990) | 40990..41256 | - | 267 | WP_237163090.1 | hypothetical protein | - |
| AL477_RS00250 (41408) | 41408..41599 | - | 192 | WP_059331048.1 | hypothetical protein | - |
| AL477_RS00255 (41596) | 41596..42018 | - | 423 | WP_061066715.1 | DUF1380 family protein | - |
| AL477_RS00260 (42065) | 42065..42490 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| AL477_RS00270 (42905) | 42905..43681 | - | 777 | WP_061066727.1 | hypothetical protein | - |
| AL477_RS00275 (43732) | 43732..44199 | - | 468 | WP_237163089.1 | DUF1380 family protein | - |
| AL477_RS00280 (44180) | 44180..44401 | - | 222 | WP_001104879.1 | hypothetical protein | - |
| AL477_RS00285 (44402) | 44402..45085 | - | 684 | WP_000086185.1 | DNA methylase | - |
| AL477_RS00290 (45162) | 45162..45473 | - | 312 | WP_061066717.1 | hypothetical protein | - |
| AL477_RS00295 (45470) | 45470..46372 | - | 903 | WP_094189542.1 | DUF1281 domain-containing protein | - |
| AL477_RS00310 (47053) | 47053..47445 | - | 393 | WP_000272015.1 | plasmid partitioning/stability family protein | - |
| AL477_RS00315 (47449) | 47449..48423 | - | 975 | WP_001217833.1 | plasmid segregation protein ParM | - |
| AL477_RS25785 (48662) | 48662..49036 | - | 375 | WP_061066720.1 | hypothetical protein | - |
| AL477_RS00325 (49036) | 49036..49668 | - | 633 | WP_000312331.1 | ParA family protein | - |
| AL477_RS00330 (50252) | 50252..51037 | - | 786 | WP_061066721.1 | site-specific integrase | - |
| AL477_RS00335 (51039) | 51039..51452 | - | 414 | WP_000465043.1 | hypothetical protein | - |
| AL477_RS00345 (52021) | 52021..52275 | + | 255 | WP_000343104.1 | hypothetical protein | - |
| AL477_RS00350 (52275) | 52275..52865 | + | 591 | WP_061066722.1 | hypothetical protein | - |
| AL477_RS00360 (53035) | 53035..54381 | - | 1347 | WP_024261879.1 | protein YagA | - |
| AL477_RS00370 (54735) | 54735..55337 | + | 603 | WP_023156839.1 | ProQ/FINO family protein | - |
| AL477_RS00375 (55393) | 55393..55902 | + | 510 | WP_061066723.1 | hypothetical protein | - |
| AL477_RS26540 (56349) | 56349..56444 | - | 96 | Protein_65 | type II toxin-antitoxin system antitoxin YacA | - |
| AL477_RS00395 (57354) | 57354..58385 | - | 1032 | WP_000907866.1 | plasmid replication initiator RepA | - |
| AL477_RS26095 (59343) | 59343..59501 | + | 159 | Protein_67 | ash family protein | - |
| AL477_RS00415 (59539) | 59539..59826 | + | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| AL477_RS00425 (60268) | 60268..60801 | + | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| AL477_RS00435 (61055) | 61055..61738 | + | 684 | WP_023196143.1 | conjugal transfer protein TraC | - |
| AL477_RS00445 (61910) | 61910..62164 | + | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| AL477_RS00455 (62425) | 62425..62691 | + | 267 | WP_001545761.1 | hypothetical protein | - |
| AL477_RS00465 (63663) | 63663..64730 | + | 1068 | WP_001545759.1 | hypothetical protein | VF |
| AL477_RS00470 (64730) | 64730..65167 | + | 438 | WP_001545758.1 | hypothetical protein | VF |
| AL477_RS00475 (65181) | 65181..66863 | + | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| AL477_RS00480 (66856) | 66856..68151 | + | 1296 | WP_016245572.1 | type 4b pilus protein PilO2 | - |
| AL477_RS00485 (68138) | 68138..68590 | + | 453 | WP_001247333.1 | hypothetical protein | VF |
| AL477_RS00490 (68601) | 68601..70154 | + | 1554 | WP_001545756.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| AL477_RS00495 (70167) | 70167..71252 | + | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| AL477_RS00500 (71269) | 71269..71883 | + | 615 | WP_000908227.1 | hypothetical protein | VF |
| AL477_RS00505 (71893) | 71893..72453 | + | 561 | WP_000014005.1 | hypothetical protein | VF |
| AL477_RS00510 (72438) | 72438..73094 | + | 657 | WP_001193549.1 | hypothetical protein | VF |
| AL477_RS00515 (73094) | 73094..74386 | + | 1293 | WP_001390622.1 | hypothetical protein | VF |
| AL477_RS00520 (74383) | 74383..74631 | - | 249 | WP_001349157.1 | hypothetical protein | - |
| AL477_RS00555 (76152) | 76152..77306 | + | 1155 | WP_001139958.1 | site-specific integrase | - |
| AL477_RS00560 (77457) | 77457..78281 | + | 825 | WP_001545755.1 | conjugal transfer protein TraE | - |
| AL477_RS00565 (78367) | 78367..79569 | + | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| AL477_RS00570 (79629) | 79629..80213 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| AL477_RS00575 (80608) | 80608..81066 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| AL477_RS00580 (81063) | 81063..81881 | + | 819 | WP_061066726.1 | hypothetical protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|